View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1335_high_28 (Length: 247)

Name: NF1335_high_28
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1335_high_28
NF1335_high_28
[»] chr6 (13 HSPs)
chr6 (16-223)||(22503918-22504127)
chr6 (16-142)||(2618529-2618654)
chr6 (16-145)||(29401313-29401443)
chr6 (16-142)||(3514611-3514739)
chr6 (16-139)||(12614481-12614607)
chr6 (16-142)||(6360934-6361064)
chr6 (16-145)||(31258331-31258461)
chr6 (107-141)||(350682-350716)
chr6 (16-57)||(7525015-7525056)
chr6 (22-76)||(6294436-6294490)
chr6 (104-141)||(11088832-11088869)
chr6 (104-141)||(31861250-31861287)
chr6 (22-58)||(30915207-30915243)
[»] chr4 (16 HSPs)
chr4 (16-145)||(11681501-11681630)
chr4 (16-145)||(11689780-11689909)
chr4 (16-142)||(53011890-53012016)
chr4 (16-142)||(32130552-32130679)
chr4 (16-142)||(27632573-27632700)
chr4 (16-139)||(44478215-44478338)
chr4 (16-142)||(19661554-19661682)
chr4 (16-76)||(23425995-23426055)
chr4 (16-142)||(16887746-16887872)
chr4 (16-142)||(41038424-41038553)
chr4 (16-142)||(23256768-23256898)
chr4 (16-142)||(29221386-29221510)
chr4 (16-57)||(28463436-28463477)
chr4 (22-141)||(26328796-26328912)
chr4 (106-139)||(5545592-5545625)
chr4 (22-58)||(24449281-24449317)
[»] chr2 (20 HSPs)
chr2 (16-145)||(4856168-4856297)
chr2 (16-145)||(45619151-45619280)
chr2 (16-141)||(7993807-7993932)
chr2 (16-145)||(26151507-26151636)
chr2 (17-138)||(13020598-13020719)
chr2 (16-144)||(42759516-42759645)
chr2 (16-154)||(18676059-18676199)
chr2 (16-145)||(25222498-25222629)
chr2 (16-142)||(6530834-6530963)
chr2 (16-142)||(12269600-12269727)
chr2 (16-142)||(2063981-2064106)
chr2 (16-142)||(36481570-36481696)
chr2 (16-142)||(41096302-41096425)
chr2 (16-142)||(42411319-42411447)
chr2 (16-142)||(45042565-45042692)
chr2 (22-141)||(1226031-1226149)
chr2 (89-142)||(19367187-19367240)
chr2 (89-142)||(34061628-34061681)
chr2 (22-58)||(17117491-17117527)
chr2 (22-58)||(18172788-18172824)
[»] chr3 (21 HSPs)
chr3 (16-147)||(24252796-24252927)
chr3 (16-138)||(8364348-8364470)
chr3 (16-142)||(52654885-52655011)
chr3 (16-145)||(6715614-6715743)
chr3 (16-139)||(27110636-27110761)
chr3 (16-142)||(28132497-28132625)
chr3 (16-139)||(25598848-25598971)
chr3 (16-142)||(27729533-27729658)
chr3 (16-141)||(21784544-21784672)
chr3 (16-142)||(51939317-51939444)
chr3 (17-138)||(23067492-23067613)
chr3 (16-147)||(23164329-23164461)
chr3 (16-139)||(13401635-13401756)
chr3 (16-142)||(20762225-20762355)
chr3 (16-142)||(46791459-46791586)
chr3 (21-142)||(29387511-29387637)
chr3 (16-49)||(18408366-18408399)
chr3 (108-141)||(40151896-40151929)
chr3 (90-154)||(15998527-15998591)
chr3 (22-58)||(21596516-21596552)
chr3 (22-58)||(27303367-27303403)
[»] chr5 (15 HSPs)
chr5 (16-145)||(26377535-26377663)
chr5 (16-145)||(26312163-26312291)
chr5 (16-145)||(37046956-37047087)
chr5 (16-145)||(13474805-13474935)
chr5 (16-142)||(12661483-12661609)
chr5 (16-139)||(36718394-36718519)
chr5 (16-146)||(13656385-13656516)
chr5 (16-142)||(13424040-13424166)
chr5 (90-141)||(931618-931669)
chr5 (16-74)||(19099145-19099203)
chr5 (22-58)||(3349575-3349611)
chr5 (22-58)||(4177382-4177418)
chr5 (90-141)||(8379208-8379257)
chr5 (22-58)||(10033733-10033769)
chr5 (18-58)||(27351527-27351567)
[»] chr1 (23 HSPs)
chr1 (16-145)||(17487038-17487168)
chr1 (16-142)||(6150897-6151024)
chr1 (16-142)||(48722128-48722255)
chr1 (16-139)||(30004673-30004796)
chr1 (16-154)||(20905035-20905174)
chr1 (16-142)||(51109861-51109990)
chr1 (16-154)||(30899835-30899979)
chr1 (16-141)||(28885434-28885560)
chr1 (16-142)||(52055727-52055852)
chr1 (16-139)||(14084463-14084588)
chr1 (21-142)||(29207855-29207982)
chr1 (16-145)||(20470787-20470918)
chr1 (16-139)||(50552670-50552796)
chr1 (16-76)||(52240365-52240425)
chr1 (16-139)||(25930778-25930902)
chr1 (16-142)||(183-311)
chr1 (16-75)||(10109899-10109961)
chr1 (107-141)||(9777678-9777712)
chr1 (16-142)||(18127701-18127826)
chr1 (109-141)||(31369276-31369308)
chr1 (109-139)||(44836492-44836522)
chr1 (22-58)||(15441470-15441506)
chr1 (22-58)||(50371316-50371352)
[»] scaffold0564 (1 HSPs)
scaffold0564 (16-145)||(1237-1366)
[»] scaffold0181 (1 HSPs)
scaffold0181 (16-143)||(16895-17022)
[»] scaffold0126 (1 HSPs)
scaffold0126 (16-145)||(16885-17015)
[»] scaffold0035 (1 HSPs)
scaffold0035 (16-122)||(22588-22694)
[»] chr8 (16 HSPs)
chr8 (16-142)||(3445710-3445834)
chr8 (17-145)||(7858260-7858389)
chr8 (16-145)||(1004231-1004362)
chr8 (16-144)||(43926086-43926212)
chr8 (16-142)||(18112300-18112425)
chr8 (16-154)||(18420355-18420497)
chr8 (16-142)||(13585474-13585607)
chr8 (16-141)||(3471774-3471899)
chr8 (16-158)||(44664349-44664495)
chr8 (16-142)||(42951557-42951684)
chr8 (16-126)||(43967846-43967959)
chr8 (89-142)||(27074722-27074775)
chr8 (90-141)||(3574859-3574910)
chr8 (90-139)||(5869085-5869134)
chr8 (22-58)||(35875081-35875117)
chr8 (22-58)||(39697784-39697820)
[»] chr7 (25 HSPs)
chr7 (16-142)||(42160885-42161011)
chr7 (16-124)||(18015361-18015469)
chr7 (16-142)||(33910239-33910366)
chr7 (16-142)||(12251046-12251176)
chr7 (16-144)||(44893788-44893918)
chr7 (16-142)||(6379847-6379973)
chr7 (16-124)||(7636104-7636212)
chr7 (16-141)||(4100133-4100261)
chr7 (22-141)||(29730853-29730969)
chr7 (16-76)||(33418944-33419005)
chr7 (90-141)||(29742043-29742094)
chr7 (27-142)||(36796134-36796249)
chr7 (89-145)||(11672839-11672895)
chr7 (90-141)||(44875923-44875974)
chr7 (22-76)||(40841072-40841126)
chr7 (105-141)||(773644-773680)
chr7 (22-58)||(28589991-28590027)
chr7 (22-56)||(3799611-3799645)
chr7 (107-141)||(40001475-40001509)
chr7 (16-57)||(46221550-46221591)
chr7 (22-58)||(773729-773765)
chr7 (22-58)||(26633545-26633581)
chr7 (22-58)||(30739307-30739343)
chr7 (22-58)||(36438197-36438233)
chr7 (22-58)||(42312192-42312228)
[»] scaffold0100 (1 HSPs)
scaffold0100 (90-142)||(45938-45990)
[»] scaffold0034 (2 HSPs)
scaffold0034 (22-58)||(99098-99134)
scaffold0034 (90-141)||(99167-99218)


Alignment Details
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 22503918 - 22504127
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat-aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    ||||||||| ||||||||||||||||||||||||| |||||| | ||| |||||||||||||        ||| |||||||||||||  ||| |||||||    
T  22503918 aattccttttatgtttagaacttcttctgattctgttttttttttaatgaaatttagctacacaaaaaaattacgttttattttactgagggtctatttt 22504017  T
Q  115 aaaaagagagtcgaacctcctatttcac-gggacaaccctgatttgatactagagttgtaatcacctattgcaggaactcagattggatatcataaagta 213  Q
    |||||||||  ||| ||||||||||||  ||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  22504018 aaaaagagaaccgagcctcctatttcatagggaagaccctgatttgatactatagttgtaatcacctattgcaggaactcagattggatagcataaagta 22504117  T
Q  214 aaataaagtt 223  Q
    ||||||||||    
T  22504118 aaataaagtt 22504127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 2618529 - 2618654
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||| |||||||||||| || ||||||| ||||||||||||| |||| ||||||| |||||        ||| |||||||||||||| ||||||||||||    
T  2618529 aattgctttcatgtttaaaagttcttcttattctgatttttt-taatgaaatttaactacacaaaaaaattacgttttattttactaggggcctatttta 2618627  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||| |||||||||||||||||    
T  2618628 aaaagagagccgaacctcctatttcac 2618654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 29401313 - 29401443
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat-aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    ||||||||| || |||||||||||||||  || ||||||||| | ||| ||||||||||| |        |||||||||||||||||| |||||||||||    
T  29401313 aattccttttatatttagaacttcttctcgttatgatttttttttaatgaaatttagctatacaaaaaaattatgttttattttactaggggcctatttt 29401412  T
Q  115 aaaaagagagtcgaacctcctatttcacggg 145  Q
    |||||||||||||| ||||||||||||||||    
T  29401413 aaaaagagagtcgagcctcctatttcacggg 29401443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 3514739 - 3514611
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatttttt--ataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattt 113  Q
    ||||||||||||||||| || |||||||||||||||||||||  ||||| ||||||| |||||        ||| |||||||||||||| ||| ||||||    
T  3514739 aattcctttcatgtttaaaagttcttctgattctgattttttttataatgaaatttaactacaaaaaaaaattacgttttattttactaagggtctattt 3514640  T
Q  114 taaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||| || |||||||||||||    
T  3514639 taaaaagagagttgagcctcctatttcac 3514611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 12614607 - 12614481
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctga----ttttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctat 111  Q
    |||||||||||||||||||| ||||||||||||| |    |||||| |||| ||||||| |||||        ||||||||||||||||||   ||||||    
T  12614607 aattcctttcatgtttagaagttcttctgattctaacttattttttttaatgaaatttaactaca-caaaaaattatgttttattttactagaagcctat 12614509  T
Q  112 tttaaaaagagagtcgaacctcctattt 139  Q
    ||||||||||||||||||||||||||||    
T  12614508 tttaaaaagagagtcgaacctcctattt 12614481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 6360934 - 6361064
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat----aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctat 111  Q
    |||||||||||||||||||| ||||| ||||| ||||||||| |    ||| |||||||||||||        |||||||||||||||||| || |||||    
T  6360934 aattcctttcatgtttagaagttcttttgattttgattttttttttttaatgaaatttagctacacaaaaaagttatgttttattttactagggacctat 6361033  T
Q  112 tttaaaaagagagtcgaacctcctatttcac 142  Q
    ||||||||||||| ||| ||| |||||||||    
T  6361034 tttaaaaagagagccgagccttctatttcac 6361064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 31258461 - 31258331
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctaca-tnnnnnnnttatgttttattttactatgggcct-attt 113  Q
    |||||||||||||||||||||||||||| |||||| |||||| |||| ||||||||||| |         ||| |||||||||||||| ||||||  |||    
T  31258461 aattcctttcatgtttagaacttcttctaattctggtttttt-taatgaaatttagctagacaaaaaaaattacgttttattttactaggggcctgtttt 31258363  T
Q  114 taaaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||||| ||| ||||||||||||||||    
T  31258362 taaaaagagagccgagcctcctatttcacggg 31258331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 350682 - 350716
Alignment:
Q  107 cctattttaaaaagagagtcgaacctcctatttca 141  Q
    |||||||||||||||||||||||||||||||||||    
T  350682 cctattttaaaaagagagtcgaacctcctatttca 350716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 7525056 - 7525015
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatttttt 57  Q
    ||||||||||||||||||||||| |||| |||||||||||||    
T  7525056 aattcctttcatgtttagaactttttcttattctgatttttt 7525015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 6294436 - 6294490
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgattttttataataaaatttagctaca 76  Q
    |||||||||||||| ||||| ||||||||||||||| |||| ||  |||||||||    
T  6294436 tttcatgtttagaagttcttttgattctgattttttttaatgaagcttagctaca 6294490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 11088832 - 11088869
Alignment:
Q  104 gggcctattttaaaaagagagtcgaacctcctatttca 141  Q
    |||||||||||||||||||||| || ||||||||||||    
T  11088832 gggcctattttaaaaagagagttgagcctcctatttca 11088869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 31861250 - 31861287
Alignment:
Q  104 gggcctattttaaaaagagagtcgaacctcctatttca 141  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  31861250 gggcctattttaaatagagagtcgagcctcctatttca 31861287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 30915243 - 30915207
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    ||||||||||| || ||||||||||||||||||||||    
T  30915243 tttcatgtttataagttcttctgattctgatttttta 30915207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 11681630 - 11681501
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||        |||||||||||||||||| ||||||||||||    
T  11681630 aattcctttcatgtttagaactttttctgattctgattttttttaatgaaatttagctacacaaaaaagttatgttttattttactaggggcctatttta 11681531  T
Q  116 aaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||||||| ||||||||||||||||    
T  11681530 aaaagagagtcgagcctcctatttcacggg 11681501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 11689909 - 11689780
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||        |||||||||||||||||| ||||||||||||    
T  11689909 aattcctttcatgtttagaactttttctgattctgattttttttaatgaaatttagctacacaaaaaagttatgttttattttactaggggcctatttta 11689810  T
Q  116 aaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||||||| ||||||||||||||||    
T  11689809 aaaagagagtcgagcctcctatttcacggg 11689780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 53011890 - 53012016
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||        ||| |||||||||||||||| ||||||||||    
T  53011890 aattcctttcatgtttagaagttcttctgattctgattttttttaatgaaatttagctacacaaaaaaattacgttttattttactatgagcctatttta 53011989  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||| ||| |||||||||||||    
T  53011990 aaaagagagccgagcctcctatttcac 53012016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 32130679 - 32130552
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatt-ttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||        ||| |||||||||||||| || ||||||||    
T  32130679 aattcctttcatgtttagaagttcttctgattctgatttttttttaataaaatttagctacacaaaaaaattacgttttattttactaaggacctatttt 32130580  T
Q  115 aaaaagagagtcgaacctcctatttcac 142  Q
    ||||  |||| ||| |||||||||||||    
T  32130579 aaaagaagagccgagcctcctatttcac 32130552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 27632573 - 27632700
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctga-ttttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||||||| ||||||||||||||| |||||| |||| || |||| |||||        ||| |||||||||||||| |||||||||||    
T  27632573 aattcctttcatgtttagaagttcttctgattctgatttttttttaatgaagtttaactacacaaaaaaattacgttttattttactaggggcctatttt 27632672  T
Q  115 aaaaagagagtcgaacctcctatttcac 142  Q
    |||| ||||| ||| |||||||||||||    
T  27632673 aaaatgagagccgagcctcctatttcac 27632700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 44478215 - 44478338
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    ||||||| | |||||||||||||||||||| || |||||||| |||| |||||||||||||        ||| ||||||||||||||  |  ||||||||    
T  44478215 aattcctcttatgtttagaacttcttctgactcggattttttttaatgaaatttagctacacaaaaaaattacgttttattttactaaagatctatttta 44478314  T
Q  116 aaaagagagtcgaacctcctattt 139  Q
    ||||||||||||||||||||||||    
T  44478315 aaaagagagtcgaacctcctattt 44478338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 19661554 - 19661682
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat--aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattt 113  Q
    |||||||||||||||||||| |||||||||||||| |||||| |  ||| ||||||| |||||        |||||||||||||||||| | ||||||||    
T  19661554 aattcctttcatgtttagaagttcttctgattctgtttttttttttaatgaaatttaactacacaaaaaaattatgttttattttactaggagcctattt 19661653  T
Q  114 taaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||  || |||||||||||||    
T  19661654 taaaaagagagcagagcctcctatttcac 19661682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 23426055 - 23425995
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctaca 76  Q
    |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||    
T  23426055 aattcctttcatgtttagaagttcttctgattctaattttttttaataaaatttagctaca 23425995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 16887872 - 16887746
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||| ||||||| || |||||||| ||||||||| |||| || ||||||||||        ||| ||||||||||| || ||||||||||||    
T  16887872 aattcctttcatatttagaagttattctgattatgattttttttaatgaagtttagctacacagaaaaattacgttttattttattaagggcctatttta 16887773  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||| ||||||| | |||| ||||||||    
T  16887772 aaaggagagtcaagcctcatatttcac 16887746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 41038424 - 41038553
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataa--aatttagctacatnnnnnnn-ttatgttttattttactatgggcctatt 112  Q
    |||||||||||||||||||| ||||||||||| ||||||||| |  |||  ||||||||||||         |||  ||||||||||||| |||||||||    
T  41038424 aattcctttcatgtttagaagttcttctgattttgatttttttttttaatgaatttagctacacaaaaaaaattacattttattttactaggggcctatt 41038523  T
Q  113 ttaaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||| ||| |||||||||||||    
T  41038524 ttaaaaagagagccgagcctcctatttcac 41038553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 23256768 - 23256898
Alignment:
Q  16 aattcctttcatgtttagaactt-cttctgattctgattttttat----aataaaatttagctacatnnnnnnnttatgttttattttactatgggccta 110  Q
    |||||||||||||||| ||| || ||||||||||||||||||| |    ||| ||||||| |||||        ||| |||||||||||||| |||||||    
T  23256768 aattcctttcatgtttggaagtttcttctgattctgattttttttttttaatgaaatttaactacacaaaaaaattacgttttattttacta-gggccta 23256866  T
Q  111 ttttaaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||||| ||| |||||||||||||    
T  23256867 ttttaaaaagagagccgagcctcctatttcac 23256898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 29221510 - 29221386
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |||| || |||||  |||        | | ||||||||||||||  |||||||||||    
T  29221510 aattcctttcatatttagaagttcttctgattctgattttttttaatgaagtttaga-acacaaaaaaat-acgttttattttactagaggcctatttta 29221413  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||| ||| |||||||||||||    
T  29221412 aaaagagagccgagcctcctatttcac 29221386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 28463477 - 28463436
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatttttt 57  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  28463477 aattcctttgatgtttagaacttcttctgattctgatttttt 28463436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 26328912 - 26328796
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgg-gcctattttaaaaag 120  Q
    |||||||||||||| ||||||| ||||||||||||| |||| || ||||||||||        |||||||||  |||  || || |||||||||||||||    
T  26328912 tttcatgtttagaaattcttctaattctgatttttt-taatgaagtttagctaca-caaaaaattatgtttttattt--tagggagcctattttaaaaag 26328817  T
Q  121 agagtcgaacctcctatttca 141  Q
    |||||||||||||||||||||    
T  26328816 agagtcgaacctcctatttca 26328796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 5545592 - 5545625
Alignment:
Q  106 gcctattttaaaaagagagtcgaacctcctattt 139  Q
    ||||||||||||||||||||||| ||||||||||    
T  5545592 gcctattttaaaaagagagtcgagcctcctattt 5545625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 24449281 - 24449317
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    ||||||||||| || ||||||||||||||||||||||    
T  24449281 tttcatgtttaaaagttcttctgattctgatttttta 24449317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 4856168 - 4856297
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||        ||| |||||||||||||| ||||||||||||    
T  4856168 aattcctttcatgtttagaacttcttctgattctgattttttttaatgaaatttagctacacaaaaaaattacgttttattttactaggggcctatttta 4856267  T
Q  116 aaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||||||| ||||||||||||||||    
T  4856268 aaaagagagtcgagcctcctatttcacggg 4856297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 45619151 - 45619280
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||        ||| |||||||||||||| ||||||||||||    
T  45619151 aattcctttcatgtttagaacttcttctgattctgattttttttaatgaaatttagcttcacaaacaaattacgttttattttactaagggcctatttta 45619250  T
Q  116 aaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||||||| |||| |||||||||||    
T  45619251 aaaagagagtcgagcctcgtatttcacggg 45619280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 7993807 - 7993932
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| |||||        |||||||||||||||||| | ||||||||||    
T  7993807 aattcctttcatgtttagaagttcttctgattctgattttttttaatgaaatttaactacacaaaaaaattatgttttattttactaggtgcctatttta 7993906  T
Q  116 aaaagagagtcgaacctcctatttca 141  Q
    ||||||||| ||||||||||||||||    
T  7993907 aaaagagagccgaacctcctatttca 7993932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 26151636 - 26151507
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||        ||| |||||||||||||| ||||||||||||    
T  26151636 aattactttcatgtttagaacttcttctgattctgattttttttaatgaaatttagctacacaaaaaaattacgttttattttactaggggcctatttta 26151537  T
Q  116 aaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||| | | ||||||||||||||||    
T  26151536 aaaagagagccaagcctcctatttcacggg 26151507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 13020598 - 13020719
Alignment:
Q  17 attcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattttaa 116  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||| |||        ||| |||||||||||||| |||||||||||||    
T  13020598 attcctttcatgtttagaacttcttctaattctgattttttttaatgaaatttagcaacacaaaaaaattacgttttattttactaggggcctattttaa 13020697  T
Q  117 aaagagagtcgaacctcctatt 138  Q
    |||||||| |||||||||||||    
T  13020698 aaagagagccgaacctcctatt 13020719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 42759645 - 42759516
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctaca-tnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||         ||| ||||||||||||||||| ||||||||    
T  42759645 aattcctttcatgtttagaacttcttctgattctgattttttttaatgaaatttaactacacaaaaaaaattacgttttattttactatggacctatttt 42759546  T
Q  115 aaaaagagagtcgaacctcctatttcacgg 144  Q
    |||||||| |  || |||||||||||||||    
T  42759545 aaaaagagggctgagcctcctatttcacgg 42759516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 18676199 - 18676059
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatt-ttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||||||| ||||||||||||||||| |||| |||| |||||||||||||        ||| |||||||||||||| |||||||||||    
T  18676199 aattcctttcatgtttagaagttcttctgattctgatttttttttaatgaaatttagctacacaaaaaaattacgttttattttactaggggcctatttt 18676100  T
Q  115 aaaaagagagtcgaacctcctatttcac-gggacaaccctg 154  Q
    | ||||||||  || |||| |||||||| ||||| ||||||    
T  18676099 ataaagagagctgagcctcttatttcacagggacgaccctg 18676059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 25222498 - 25222629
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctga--ttttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattt 113  Q
    ||||||||||||||||||||||| |||||||| |||  |||||| ||||||||||||||||||        ||| |||||||||||||| ||||||| ||    
T  25222498 aattcctttcatgtttagaactttttctgattttgattttttttttaataaaatttagctacacaaaaaaattacgttttattttactaggggcctactt 25222597  T
Q  114 taaaaagagagtcgaacctcctatttcacggg 145  Q
    |||||| |||| | ||||| ||||||||||||    
T  25222598 taaaaaaagagccaaaccttctatttcacggg 25222629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 6530834 - 6530963
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat---aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatt 112  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |   ||| |||||||||||||        ||| ||||||||||| || | |||||||    
T  6530834 aattcctttcatgtttagaagttcttttgattctgatttttttttttaatgaaatttagctacacaaagaaattacgttttattttaataggagcctatt 6530933  T
Q  113 ttaaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||| ||| |||||||||||||    
T  6530934 ttaaaaagagagccgagcctcctatttcac 6530963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 12269600 - 12269727
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatttt-ttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||||||| ||||||||||||||||||| || |||| |||||||||||||        ||| ||||||||||| || |  ||||||||    
T  12269600 aattcctttcatgtttagaagttcttctgattctgattttcttttaatgaaatttagctacacaaaaaaattacgttttattttaataggaacctatttt 12269699  T
Q  115 aaaaagagagtcgaacctcctatttcac 142  Q
    ||||||||||||||  || |||||||||    
T  12269700 aaaaagagagtcgagtctactatttcac 12269727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 2063981 - 2064106
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||| ||| |||||||  |||||||||||||||||||| |||| || ||||||||||        ||| |||||||||||||| || |||||||||    
T  2063981 aattccttccatatttagaaggtcttctgattctgatttttt-taatgaagtttagctacacaaagatattacgttttattttactacggacctatttta 2064079  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    |||||||||| || |||||||||||||    
T  2064080 aaaagagagttgagcctcctatttcac 2064106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 36481570 - 36481696
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| | |||        ||| ||||||||||||||   | ||||||||    
T  36481570 aattcctttcatgtttagaagttcttctgattctgattttttttaatgaaatttaaccacacaaaaaaattacgttttattttactagaagactatttta 36481669  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||| | |||||||||| ||||    
T  36481670 aaaagagagccaaacctcctatgtcac 36481696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 41096425 - 41096302
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| ||||||| ||| || |||||| |||| ||||||| |||||        ||| |||||||||||||| ||| ||||||||    
T  41096425 aattcctttcatgtttagaagttcttcttattatgttttttt-taatgaaatttaactaca--caaaaattacgttttattttactaggggtctatttta 41096329  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||| ||| |||||||||||||    
T  41096328 aaaagagagccgagcctcctatttcac 41096302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 42411447 - 42411319
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat----aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctat 111  Q
    |||| |||||||||||| || ||||||||||||||||||||| |    ||| ||||| || ||||        |||||||||||||||||||| ||||||    
T  42411447 aatttctttcatgtttaaaagttcttctgattctgattttttttttttaatgaaattaagttacacaaaaaaattatgttttattttactatgagcctat 42411348  T
Q  112 tttaaaaagagagtcgaacctcctatttcac 142  Q
    |||||||  ||||||||||||||||||||||    
T  42411347 tttaaaa--agagtcgaacctcctatttcac 42411319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 45042565 - 45042692
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctga-ttttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||| ||||||| |||||| |||||||| |||||| |||| || ||||||||||        ||| |||||||||||||||||| |||||||    
T  45042565 aattcctttcatatttagaagttcttccgattctgatttttttttaatgaagtttagctacacaaaaaaattacgttttattttactatgggtctatttt 45042664  T
Q  115 aaaaagagagtcgaacctcctatttcac 142  Q
    |||||| ||| |||  ||| ||||||||    
T  45042665 aaaaagtgagccgattctcatatttcac 45042692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 1226149 - 1226031
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnn-ttatgtttt-attttactatgggcctattttaaaaa 119  Q
    |||||||||||||| ||||||| ||||||||||||| |||| || ||||||||||         ||||||||| ||||||  | ||||||||||||||||    
T  1226149 tttcatgtttagaagttcttctaattctgatttttt-taatgaagtttagctacacaaaaaaaattatgtttttatttta--aggggcctattttaaaaa 1226053  T
Q  120 gagagtcgaacctcctatttca 141  Q
    ||||||||| ||||||||||||    
T  1226052 gagagtcgagcctcctatttca 1226031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 19367240 - 19367187
Alignment:
Q  89 gttttattttactatgggcctattttaaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||||| | ||||||||||||||||||||| | |||||||||||||    
T  19367240 gttttattttactaggagcctattttaaaaagagagtcaagcctcctatttcac 19367187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 34061681 - 34061628
Alignment:
Q  89 gttttattttactatgggcctattttaaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||||| |||| ||||||||||||||||  || |||||||||||||    
T  34061681 gttttattttactaggggcttattttaaaaagagagctgagcctcctatttcac 34061628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 17117527 - 17117491
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    ||||||||||||||  |||||||||||||||||||||    
T  17117527 tttcatgtttagaagctcttctgattctgatttttta 17117491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 18172824 - 18172788
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    ||||||||||||||  |||||||||||||||||||||    
T  18172824 tttcatgtttagaaactcttctgattctgatttttta 18172788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 24252796 - 24252927
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||        |||||||||||| ||| ||||||||||||||    
T  24252796 aattcctttcatgtttagaacttcttctgattctaattttttttaatgaaatttagctacacaaaaaaattatgttttattatacaatgggcctatttta 24252895  T
Q  116 aaaagagagtcgaacctcctatttcacgggac 147  Q
    ||||||||| ||||||||||||||||||||||    
T  24252896 aaaagagagacgaacctcctatttcacgggac 24252927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 8364348 - 8364470
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||| |||        ||| |||||||||||||||||||||||||||    
T  8364348 aattcctttcatgtttagaacttcttctgattctaattttttttaatgaaatttagcaacacaaaaaaattacgttttattttactatgggcctatttta 8364447  T
Q  116 aaaagagagtcgaacctcctatt 138  Q
    ||||||||||||| |||||||||    
T  8364448 aaaagagagtcgagcctcctatt 8364470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 52655011 - 52654885
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| ||||||||||||| ||||||| |||| ||||||| |||||        ||| |||||||||||||| || |||||||||    
T  52655011 aattcctttcatgtttagaagttcttctgattctaattttttttaatgaaatttaactacacaaaaaaattacgttttattttactagggacctatttta 52654912  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    |||||||||| || |||||||||||||    
T  52654911 aaaagagagttgagcctcctatttcac 52654885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 6715614 - 6715743
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||| |||||||||| ||||||||| |||||||||||| |||| |||||||||||||        ||| |||||||||||||| ||  ||||||||    
T  6715614 aattccttccatgtttagatcttcttctgcttctgattttttttaatgaaatttagctacacaaaaaaattacgttttattttactaaggatctatttta 6715713  T
Q  116 aaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||| ||| ||||||||||||||||    
T  6715714 aaaagagagccgagcctcctatttcacggg 6715743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 27110761 - 27110636
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattt-tttataataaaatttagctaca-tnnnnnnnttatgttttattttactatgggcctattt 113  Q
    |||||||||||||||||||||||||| |||||||||||| ||| |||| |||||||||||||         ||| |||||||||||||| ||| ||||||    
T  27110761 aattcctttcatgtttagaacttcttatgattctgatttatttttaatgaaatttagctacacaaaaaaaattacgttttattttactacgggtctattt 27110662  T
Q  114 taaaaagagagtcgaacctcctattt 139  Q
    ||||||||||||||| ||||||||||    
T  27110661 taaaaagagagtcgagcctcctattt 27110636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 28132625 - 28132497
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnn--ttatgttttattttactatgggcctattt 113  Q
    |||||||||||||||||||| ||||||||||| |||||| || |||| |||||||||||||          |||| ||||||||||||| ||||||||||    
T  28132625 aattcctttcatgtttagaagttcttctgattttgatttcttttaatgaaatttagctacacaaaaaaaaattatattttattttactaggggcctattt 28132526  T
Q  114 taaaaagagagtcgaacctcctatttcac 142  Q
    ||||||||||| ||| |||||||||||||    
T  28132525 taaaaagagagccgagcctcctatttcac 28132497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 25598971 - 25598848
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||| ||||||||||||||| ||||||||||||||||||||| |||| || ||||||||||        ||| ||||||||||||||  | |||||||||    
T  25598971 aatttctttcatgtttagaagttcttctgattctgattttttttaatgaagtttagctacacaaaaaaattacgttttattttactaaagacctatttta 25598872  T
Q  116 aaaagagagtcgaacctcctattt 139  Q
    ||||||||| ||| ||||||||||    
T  25598871 aaaagagagccgagcctcctattt 25598848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 27729658 - 27729533
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| ||||||||||| | ||||||| |||| |||||||||||||        |||  ||||||||||||| || |||||||||    
T  27729658 aattcctttcatgtttagaagttcttctgattttaattttttttaatgaaatttagctaca-caaaaaattacattttattttactagggacctatttta 27729560  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    |||||| || |||||||||||||||||    
T  27729559 aaaagacagccgaacctcctatttcac 27729533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 21784672 - 21784544
Alignment:
Q  16 aattcctttcatgttta----gaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctat 111  Q
    |||||||||||||||||    ||| ||||| ||||||||||||||| |||| ||||||| |||||        ||| ||||||||||||||||  |||||    
T  21784672 aattcctttcatgtttaattagaagttcttttgattctgattttttttaatgaaatttaactacacaaaaaaattacgttttattttactatga-cctat 21784574  T
Q  112 tttaaaaagagagtcgaacctcctatttca 141  Q
    ||||||||||||||||||||||||||||||    
T  21784573 tttaaaaagagagtcgaacctcctatttca 21784544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 51939444 - 51939317
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatt-ttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||||||| ||||||| ||||||||| |||| |||| |||||||||||||        ||| ||| ||||||| || | |||||||||    
T  51939444 aattcctttcatgtttagaagttcttctcattctgatttttttttaatgaaatttagctacacaaaaaaattacgttatattttaataggagcctatttt 51939345  T
Q  115 aaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||||| ||| |||||||||    
T  51939344 aaaaagagagtcgagcctactatttcac 51939317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 23067613 - 23067492
Alignment:
Q  17 attcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattttaa 116  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| | |||        |||  |||||||||||||  | | ||||||||    
T  23067613 attcctttcatgtttagaacttcttctgattttgattttttttaatgaaatttaacaacacaaaaaaattacattttattttactagagacatattttaa 23067514  T
Q  117 aaagagagtcgaacctcctatt 138  Q
    |||||||||||| |||||||||    
T  23067513 aaagagagtcgagcctcctatt 23067492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 23164461 - 23164329
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat-aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    ||||| |||||| ||||||| ||||||||||||| ||||||| | ||| |||||||||||||        ||||||||||||||||||  ||||||||||    
T  23164461 aattcttttcatatttagaagttcttctgattctaatttttttttaatgaaatttagctacacaaaaaaattatgttttattttactagaggcctatttt 23164362  T
Q  115 aaaaagagagtcgaacctcctatttcacgggac 147  Q
    ||||||||||  |  ||||||||||||| ||||    
T  23164361 aaaaagagagctgtgcctcctatttcacaggac 23164329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 13401635 - 13401756
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| ||||||||||| | ||||||| |||| || |||| |||||        |||  ||||||||||||| || |||||||||    
T  13401635 aattcctttcatgtttagaagttcttctgatt-tcatttttt-taatgaagtttaactacacaaaaaagttacattttattttactaaggacctatttta 13401732  T
Q  116 aaaagagagtcgaacctcctattt 139  Q
    ||||||||||||| ||||||||||    
T  13401733 aaaagagagtcgagcctcctattt 13401756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 20762225 - 20762355
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactat----gggcctat 111  Q
    ||||| |||||| ||||||| |||||| |||||||||||||| |||| || |||| |||||        |||  ||||||||||||||    || |||||    
T  20762225 aattcatttcatatttagaagttcttccgattctgattttttttaatgaagtttaactacacaaaaaaattacattttattttactatatatggacctat 20762324  T
Q  112 tttaaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||| || |||||||||||||||||    
T  20762325 tttaaaaagaaagccgaacctcctatttcac 20762355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 46791586 - 46791459
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaa---atttagctacatnnnnnnnttatgttttattttactatgggcctatt 112  Q
    |||||||||||||||||||| |||||| ||||||| |||||| |  | ||   |||||| |||||       ||| |||||||||||||| |||||||||    
T  46791586 aattcctttcatgtttagaagttcttcagattctggttttttttttttaatgaatttagatacataaaaaaattacgttttattttactaggggcctatt 46791487  T
Q  113 ttaaaaagagagtcgaacctcctatttcac 142  Q
    ||  |||||||| ||| |||||||||||||    
T  46791486 tt--aaagagagccgagcctcctatttcac 46791459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 29387637 - 29387511
Alignment:
Q  21 ctttcatgtttagaacttcttctgattctgattttttat-----aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||| || ||||||||||||||||||||| |     ||| ||||||| |||||        |||| |||||||||||||  |  ||||||||    
T  29387637 ctttcatgtttataagttcttctgattctgatttttttttttttaatgaaatttaactacacaaaaaaattatattttattttactaaagatctatttta 29387538  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||||||| |||| ||||||||    
T  29387537 aaaagagagtcgagcctcatatttcac 29387511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 18408366 - 18408399
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattct 49  Q
    |||||||||||||||||||| |||||||||||||    
T  18408366 aattcctttcatgtttagaagttcttctgattct 18408399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 40151929 - 40151896
Alignment:
Q  108 ctattttaaaaagagagtcgaacctcctatttca 141  Q
    ||||||||||||||||||||| ||||||||||||    
T  40151929 ctattttaaaaagagagtcgagcctcctatttca 40151896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 15998527 - 15998591
Alignment:
Q  90 ttttattttactatgggcctattttaaaaagagagtcgaacctcctatttcacgggacaaccctg 154  Q
    ||||||||||||  | |||||||||| |||||||||||| | ||||||||||  |||| ||||||    
T  15998527 ttttattttactgagagcctattttagaaagagagtcgatcatcctatttcataggacgaccctg 15998591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 21596516 - 21596552
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  21596516 tttcatgtttagaagttcttttgattctgatttttta 21596552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 27303367 - 27303403
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    ||||||||||| || ||||||||||||||||||||||    
T  27303367 tttcatgtttaaaagttcttctgattctgatttttta 27303403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 26377663 - 26377535
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||        ||||||| |||||||||| ||||||||||||    
T  26377663 aattcctttcatgtttagaacttcttctgattctgatttttt-taatgaaattgagctacacaaaaaaattatgttctattttactaggggcctatttta 26377565  T
Q  116 aaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||||||| ||||||||||||||||    
T  26377564 aaaagagagtcgagcctcctatttcacggg 26377535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 26312163 - 26312291
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||        ||| |||||||||||||||  ||||||||||    
T  26312163 aattcctttcatgtttagaacttcttctgattctgatttttt-taatgaaatttagctacacaaaaaaattacgttttattttactattagcctatttta 26312261  T
Q  116 aaaagagagtcgaacctcctatttcacggg 145  Q
    ||| ||||||||| ||||||||||||||||    
T  26312262 aaatgagagtcgagcctcctatttcacggg 26312291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 37046956 - 37047087
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat--aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattt 113  Q
    |||| ||||||||||||||||||||||| ||||||||||||| |  |||||||||||||||||        ||| |||||||||||||| ||||||||||    
T  37046956 aatttctttcatgtttagaacttcttctaattctgattttttttttaataaaatttagctacacaaaaaaattacgttttattttactaagggcctattt 37047055  T
Q  114 taaaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||||| ||||||||||||||||||||    
T  37047056 taaaaagagagccgaacctcctatttcacggg 37047087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 13474805 - 13474935
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat-aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||| ||||||||||||||| ||||||||||||| | |||||||||||||||||        ||| ||||||||||||||  ||||||||||    
T  13474805 aattcctttcatttttagaacttcttcttattctgatttttttttaataaaatttagctacacaaaaaaattacgttttattttactagaggcctatttt 13474904  T
Q  115 aaaaagagagtcgaacctcctatttcacggg 145  Q
    |||||||||||||| ||||||||||||||||    
T  13474905 aaaaagagagtcgagcctcctatttcacggg 13474935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 12661483 - 12661609
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||        ||| ||||||||||||||  | |||||||||    
T  12661483 aattcctttcatgtttagaagttcttctgattctgattttttttaataaaatttagctacacaaaaaaattacgttttattttactaaagacctatttta 12661582  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||| ||| ||||| |||||||    
T  12661583 aaaagagagccgagcctcccatttcac 12661609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 36718519 - 36718394
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatt--ttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattt 113  Q
    ||||||||||||||||||||| ||||| ||||||||||  |||| ||||||||||||||||||        ||| |||||||||||||||||  ||||||    
T  36718519 aattcctttcatgtttagaacatcttccgattctgattttttttttaataaaatttagctacacaaaaaaattacgttttattttactatggatctattt 36718420  T
Q  114 taaaaagagagtcgaacctcctattt 139  Q
    |||||||||||| || ||||||||||    
T  36718419 taaaaagagagttgagcctcctattt 36718394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 13656385 - 13656516
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat--aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattt 113  Q
    |||||||||||||||||||||||||||| ||||| ||||||| |  ||| ||||||||||| |        ||| ||||||||||||||||  |||||||    
T  13656385 aattcctttcatgtttagaacttcttcttattctaattttttttttaatgaaatttagctatacaaaaaaattacgttttattttactatga-cctattt 13656483  T
Q  114 taaaaagagagtcgaacctcctatttcacggga 146  Q
    ||||||||||| |||||||||||||||||||||    
T  13656484 taaaaagagagccgaacctcctatttcacggga 13656516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 13424040 - 13424166
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    ||||||||||||||||| || ||||||||||||||||||||| |||| ||||||| |||||        |||  |||||| ||||||  | |||||||||    
T  13424040 aattcctttcatgtttaaaagttcttctgattctgattttttttaatgaaatttaactacacaaaaaaattagtttttatcttactagagacctatttta 13424139  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||| ||| |||||||||||||    
T  13424140 aaaagagagccgagcctcctatttcac 13424166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 931618 - 931669
Alignment:
Q  90 ttttattttactatgggcctattttaaaaagagagtcgaacctcctatttca 141  Q
    |||| ||||||||  || ||||||||||||||||| ||||||||||||||||    
T  931618 ttttgttttactagaggtctattttaaaaagagagccgaacctcctatttca 931669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 19099203 - 19099145
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagcta 74  Q
    ||||| |||||||||||||| ||||||||||||||| |||||  ||| || ||||||||    
T  19099203 aattcttttcatgtttagaagttcttctgattctgaattttttcaatgaagtttagcta 19099145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 3349611 - 3349575
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    ||||||||||||||  |||||||||||||||||||||    
T  3349611 tttcatgtttagaaactcttctgattctgatttttta 3349575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 4177382 - 4177418
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  4177382 tttcatgtttagaagttcttctgattatgatttttta 4177418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 8379257 - 8379208
Alignment:
Q  90 ttttattttactatgggcctattttaaaaagagagtcgaacctcctatttca 141  Q
    |||||||||||||  | |||||||||||||||||| |||| |||||||||||    
T  8379257 ttttattttacta--gacctattttaaaaagagagccgaatctcctatttca 8379208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 10033733 - 10033769
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    ||||||||||| || ||||||||||||||||||||||    
T  10033733 tttcatgtttaaaagttcttctgattctgatttttta 10033769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 27351527 - 27351567
Alignment:
Q  18 ttcctttcatgtttagaacttcttctgattctgatttttta 58  Q
    |||||||||||||||||| ||||||||||||  ||||||||    
T  27351527 ttcctttcatgtttagaagttcttctgattcgaatttttta 27351567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 17487168 - 17487038
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat-aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||||||||||||||||||||||| ||||| | ||| |||||||||||||        ||| |||||||||||||| |||||||||||    
T  17487168 aattcctttcatgtttagaacttcttctgattctgagtttttttcaatgaaatttagctacacaaaaaaattacgttttattttactaagggcctatttt 17487069  T
Q  115 aaaaagagagtcgaacctcctatttcacggg 145  Q
    |||||||||||||| ||||||||||||||||    
T  17487068 aaaaagagagtcgagcctcctatttcacggg 17487038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 6150897 - 6151024
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat-aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||||||| |||||||||||||  |||||| | ||| |||||||||||||        |||||||||||||||||| |||| ||||||    
T  6150897 aattcctttcatgtttagaagttcttctgattctattttttttttaatgaaatttagctacacaaaaaaattatgttttattttactaagggcttatttt 6150996  T
Q  115 aaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||||| |||||||||||||    
T  6150997 aaaaagagagtcgagcctcctatttcac 6151024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 48722255 - 48722128
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat-aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||| ||||||||||||||| ||||||||||||||||||||| | ||| ||||||| |||||        ||| ||||||||||||||||| ||||||||    
T  48722255 aatttctttcatgtttagaagttcttctgattctgatttttttttaatgaaatttaactacacaacaaaattacgttttattttactatggacctatttt 48722156  T
Q  115 aaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||||| |||||||||||||    
T  48722155 aaaaagagagtcgagcctcctatttcac 48722128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 30004796 - 30004673
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| ||||||||||||||||||  |  ||| || ||||||||||        ||| |||||||||||||||||||||||||||    
T  30004796 aattcctttcatgtttagaagttcttctgattctgatttaattcaatgaagtttagctacacaaaaaaattacgttttattttactatgggcctatttta 30004697  T
Q  116 aaaagagagtcgaacctcctattt 139  Q
    ||||||||| ||| ||||||||||    
T  30004696 aaaagagagccgagcctcctattt 30004673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 20905174 - 20905035
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||| ||||||| ||||||| |||||| |||||| |||| || ||||||||||        ||| ||||||| |||||| || |||||||||    
T  20905174 aattcctttcatatttagaagttcttcttattctggttttttttaatgaagtttagctacacaaaaaaattacgttttatcttactagggacctatttta 20905075  T
Q  116 aaaagagagtcgaacctcctatttcac-gggacaaccctg 154  Q
    ||||||||||||| ||||||||||||| ||||| ||||||    
T  20905074 aaaagagagtcgagcctcctatttcacagggacgaccctg 20905035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 51109990 - 51109861
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat--aataaaatttagctacatnnnnnnn-ttatgttttattttactatgggcctatt 112  Q
    |||||||||||||||||||| ||||||| ||||||||||||| |  ||| |||||||||||||         ||| |||||||||||||| |||||||||    
T  51109990 aattcctttcatgtttagaaattcttctaattctgattttttttttaatgaaatttagctacaaaaaaaaaattacgttttattttactaggggcctatt 51109891  T
Q  113 ttaaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||| ||| |||||||||||||    
T  51109890 ttaaaaagagagccgagcctcctatttcac 51109861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 30899835 - 30899979
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctga-ttttttataataaaatttagctacatnnnnnnnttatgttttattttac----tatgggccta 110  Q
    |||||||||||||||||||| ||||||||||||||| |||||| |||| ||||||| ||| |        ||| ||||||||||||    || ||| |||    
T  30899835 aattcctttcatgtttagaagttcttctgattctgatttttttttaatgaaatttaactagacaaaaaaattacgttttattttactaattaagggtcta 30899934  T
Q  111 ttttaaaaagagagtcgaacctcctatttcac-gggacaaccctg 154  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||    
T  30899935 ttttaaaaagagagccgaacctcctatttcacagggacaaccctg 30899979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 28885560 - 28885434
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatt-ttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||||||| ||||||| ||||||||| |||| |||| ||||||| |||||        ||| |||||||||||||| |   |||||||    
T  28885560 aattcctttcatgtttagaagttcttctaattctgatttttttttaatgaaatttaactacacaaaaaaattacgttttattttactaggtatctatttt 28885461  T
Q  115 aaaaagagagtcgaacctcctatttca 141  Q
    |||||||||||||| ||||||||||||    
T  28885460 aaaaagagagtcgagcctcctatttca 28885434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 52055727 - 52055852
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    ||||||||||||| |||||| || |||||||||||||||||| |||| || ||||||||||        ||| ||||||||||||||||  | ||||||     
T  52055727 aattcctttcatgcttagaagtttttctgattctgattttttttaatgaagtttagctacacaaaaaaattacgttttattttactatgaacttatttt- 52055825  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||||||| |||||||||||||    
T  52055826 aaaagagagtcgatcctcctatttcac 52055852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 14084588 - 14084463
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatt-ttttataataaaatttagctac-atnnnnnnnttatgttttattttactatgggcctattt 113  Q
    |||||||||||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |        ||| ||||||||||| ||| || ||||||    
T  14084588 aattcctttcatgtttagaagttcttctgattctgatttttttttaatgaaatttagctacaacaaaaaaattacgttttattttattataggtctattt 14084489  T
Q  114 taaaaagagagtcgaacctcctattt 139  Q
    ||||||||||| ||| ||||||||||    
T  14084488 taaaaagagagccgagcctcctattt 14084463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 29207982 - 29207855
Alignment:
Q  21 ctttcatgtttagaacttcttctgattctgattttttat------aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    ||||||| ||||||| ||||||||||||||||||||| |      |||||| ||||||||||        ||| ||||||||||||||||| ||||||||    
T  29207982 ctttcatatttagaagttcttctgattctgattttttttttttgtaataaagtttagctacacaaaaaaattacgttttattttactatggacctatttt 29207883  T
Q  115 aaaaagagagtcgaacctcctatttcac 142  Q
    | |||||||||||| |||||||||||||    
T  29207882 agaaagagagtcgagcctcctatttcac 29207855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 20470787 - 20470918
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctaca--tnnnnnnnttatgttttattttactatgggcct-att 112  Q
    |||||||||||||||||||||||||||| |||||| |||||| |||| ||||||||||| |          ||| |||||||||||||| ||||||  ||    
T  20470787 aattcctttcatgtttagaacttcttctaattctggtttttt-taatgaaatttagctagaacaaaaaaaattacgttttattttactaggggcctgttt 20470885  T
Q  113 ttaaaaagagagtcgaacctcctatttcacggg 145  Q
    |||||||||||| ||| ||||||||||||||||    
T  20470886 ttaaaaagagagccgagcctcctatttcacggg 20470918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 50552670 - 50552796
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat---aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatt 112  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |   ||| |||||||||||||        ||| |||||||||||||| |||  ||||    
T  50552670 aattcctttcatgtttagaagttcttttgattctgatttttttttttaatgaaatttagctacacaaaaaaattaagttttattttactaagggtttatt 50552769  T
Q  113 ttaaaaagagagtcgaacctcctattt 139  Q
    ||||||||||||  || ||||||||||    
T  50552770 ttaaaaagagagctgagcctcctattt 50552796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 52240425 - 52240365
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctaca 76  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |||| || ||||||||||    
T  52240425 aattcctttcatatttagaagttcttctgattctgattttttttaatgaagtttagctaca 52240365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 25930778 - 25930902
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatg-ttttattttactatgggcctatttt 114  Q
    ||||| |||||| |||||||  |||||||||||||||||||| |||| || ||||||||||        ||| | |||||||||| || |||||||||||    
T  25930778 aattcttttcatatttagaagctcttctgattctgattttttttaatgaagtttagctacacaaaaaaattacgtttttattttattaggggcctatttt 25930877  T
Q  115 aaaaagagagtcgaacctcctattt 139  Q
     ||||||||||||| | ||||||||    
T  25930878 caaaagagagtcgagcttcctattt 25930902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 183 - 311
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat--aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattt 113  Q
    |||||||||||||||| ||| ||||| ||||| ||||||||| |  ||| || ||||||||||        ||| |||||||||||||  | ||||||||    
T  183 aattcctttcatgtttggaagttcttttgattttgattttttttttaatgaagtttagctacacaaaaaaattacgttttattttactgggagcctattt 282  T
Q  114 taaaaagagagtcgaacctcctatttcac 142  Q
    ||||||||||  ||| |||||||||||||    
T  283 taaaaagagaaccgagcctcctatttcac 311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 10109899 - 10109961
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctga---ttttttataataaaatttagctac 75  Q
    |||||||||||||||||||| |||||||||||||||   |||||| |||| ||||||||||||    
T  10109899 aattcctttcatgtttagaagttcttctgattctgagttttttttttaatgaaatttagctac 10109961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 9777678 - 9777712
Alignment:
Q  107 cctattttaaaaagagagtcgaacctcctatttca 141  Q
    |||||||||||||||||||||||||||||||||||    
T  9777678 cctattttaaaaagagagtcgaacctcctatttca 9777712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 18127826 - 18127701
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||| |||| |||||||||| ||||| |||||||| |||||| |||| ||||||| |||||        ||   ||||||||||||| || ||||||||     
T  18127826 aatttctttaatgtttagaagttcttatgattctgtttttttttaatgaaatttaactaca-caaaaaattgcattttattttactaaggacctattttg 18127728  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||  |||||||||||||||||    
T  18127727 aaaagagaaccgaacctcctatttcac 18127701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 31369308 - 31369276
Alignment:
Q  109 tattttaaaaagagagtcgaacctcctatttca 141  Q
    |||||||||||||||||||||||||||||||||    
T  31369308 tattttaaaaagagagtcgaacctcctatttca 31369276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 139
Target Start/End: Complemental strand, 44836522 - 44836492
Alignment:
Q  109 tattttaaaaagagagtcgaacctcctattt 139  Q
    |||||||||||||||||||||||||||||||    
T  44836522 tattttaaaaagagagtcgaacctcctattt 44836492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 15441470 - 15441506
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  15441470 tttcatgtttagaagttcttctgattttgatttttta 15441506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 50371316 - 50371352
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  50371316 tttcatgtttagaagttcttatgattctgatttttta 50371352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 1237 - 1366
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||        ||| |||||||||||||| |  | |||||||    
T  1237 aattcctttcatgtttagaacttcttctgattctgattttttttaatgaaatttagctacacaaaaaaattacgttttattttactaggaacttatttta 1336  T
Q  116 aaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||| ||| ||||||||||||||||    
T  1337 aaaagagagccgagcctcctatttcacggg 1366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 17022 - 16895
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    ||||||||||||||||||||||||||| |||||||||||| | |||| |||||||||||||        ||| ||||||||||| || ||||||||||||    
T  17022 aattcctttcatgtttagaacttcttcagattctgattttatttaatgaaatttagctacacaaaaaaattacgttttattttattaggggcctatttta 16923  T
Q  116 aaaagagagtcgaacctcctatttcacg 143  Q
    ||||||||| ||| ||||||||||||||    
T  16922 aaaagagagccgagcctcctatttcacg 16895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 16885 - 17015
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctga-ttttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||||||||||||||||||||| | |||||| |||| |||||||||||||        ||| ||| |||||||||| |||||||||||    
T  16885 aattcctttcatgtttagaacttcttctgattctaatttttttttaatgaaatttagctacacaaaaaaattacgttatattttactaggggcctatttt 16984  T
Q  115 aaaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||||| || ||||||||||||||||    
T  16985 aaaaagagagttgagcctcctatttcacggg 17015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 22694 - 22588
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||        ||| ||||||||||||||||||| |||||||    
T  22694 aattcctttcatgtttagaagttcttctgattctgattttttttaataaaatttagctacacaaaaaaattacgttttattttactatgggcttatttta 22595  T
Q  116 aaaagag 122  Q
    |||||||    
T  22594 aaaagag 22588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 3445710 - 3445834
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||| ||||||| |||||        ||| |||||||||||||| ||||||||||||    
T  3445710 aattcttttcatgtttagaagttcttctgattctgattttttttaatgaaatttaactaca--caaaaattacgttttattttactaggggcctatttta 3445807  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||||||| |||||||||||||    
T  3445808 aaaagagagtcgagcctcctatttcac 3445834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 7858260 - 7858389
Alignment:
Q  17 attcctttcatgtttagaacttcttctgattctgattttttat-aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||  ||        ||| |||||||||||||| ||||||||||||    
T  7858260 attcctttcatgtttagaacttcttctgattctgatttttttttaatgaaatttagcagcacaaaaaaattacgttttattttactaggggcctatttta 7858359  T
Q  116 aaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||||||| ||||||||| ||||||    
T  7858360 aaaagagagtcgagcctcctattccacggg 7858389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 1004231 - 1004362
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat--aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattt 113  Q
    ||||||||||||||||| |||||||||||||||||||||||| |  ||| ||||||| ||||||       ||| |||||||||||||||||  ||||||    
T  1004231 aattcctttcatgtttaaaacttcttctgattctgattttttttttaatgaaatttaactacataaaaaaattacgttttattttactatggatctattt 1004330  T
Q  114 taaaaagagagtcgaacctcctatttcacggg 145  Q
    |||||| |||||||| ||||||||||||||||    
T  1004331 taaaaaaagagtcgagcctcctatttcacggg 1004362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 43926212 - 43926086
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||||||||||||||||||||||||  || | |||||||||||||        ||| ||||||||||||||  |||||||||||    
T  43926212 aattcctttcatgtttagaacttcttctgattctgattttt--tagtgaaatttagctacacaaaaaaattacgttttattttactaaaggcctatttta 43926115  T
Q  116 aaaagagagtcgaacctcctatttcacgg 144  Q
    ||||||||| ||| | |||||||||||||    
T  43926114 aaaagagagccgagcttcctatttcacgg 43926086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 18112300 - 18112425
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||| ||||||||||||||| ||||| || |||||||||||| |||| |||||||||||||        ||| |||||||||||||| || |||||||||    
T  18112300 aatttctttcatgtttagaagttcttatggttctgattttttttaatgaaatttagctacacaaaaaaattacgttttattttacta-ggacctatttta 18112398  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||| |||||||||||||||||    
T  18112399 aaaagagagccgaacctcctatttcac 18112425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 18420497 - 18420355
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat---aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatt 112  Q
    |||||||||||||||||||| || |||||||||||||||||| |   ||| |||||||||||||        ||| |||||||||||||| | | |||||    
T  18420497 aattcctttcatgtttagaagttattctgattctgatttttttttttaatgaaatttagctacacaaaaaaattacgttttattttactaggagactatt 18420398  T
Q  113 ttaaaaagagagtcgaacctcctatttcac-gggacaaccctg 154  Q
    |||||||||||| ||| ||||||||||||| ||||| ||||||    
T  18420397 ttaaaaagagagccgagcctcctatttcacagggacgaccctg 18420355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 13585474 - 13585607
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat---aataaaatttagctacatnnnnnnn----ttatgttttattttactatgggcc 108  Q
    |||||||||||||||||||| ||||||||||||||||||||| |   ||| |||||||||||||            |||  ||||||||||||| |||||    
T  13585474 aattcctttcatgtttagaagttcttctgattctgatttttttttttaatgaaatttagctacacaaaaaaaaaaattacattttattttactaggggcc 13585573  T
Q  109 tattttaaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||||||||||| |||||||||||||    
T  13585574 tattttaaaaagagagtcgagcctcctatttcac 13585607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 3471774 - 3471899
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    ||||||||| |||||||||| ||||| ||||||||||||||| |||| || ||||||||||        ||| |||||| ||||||| | || |||||||    
T  3471774 aattcctttaatgtttagaagttcttatgattctgattttttttaatgaagtttagctacacaaaaaaattacgttttactttactaagagcttatttta 3471873  T
Q  116 aaaagagagtcgaacctcctatttca 141  Q
    ||||||||| ||| ||||||||||||    
T  3471874 aaaagagagccgagcctcctatttca 3471899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 44664495 - 44664349
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat---aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatt 112  Q
    ||||||||||||||| | ||| |||||| ||||||||||||| |   |||||||||||||||||        ||| |||||||||||||| || ||||||    
T  44664495 aattcctttcatgttcaaaacatcttcttattctgatttttttttttaataaaatttagctacacaaaaaaattacgttttattttactagggacctatt 44664396  T
Q  113 ttaaaaagagagtcgaacctcctatttcac-gggacaaccctgattt 158  Q
    |||||||||||| ||| || |||||||||| ||||||  ||||||||    
T  44664395 ttaaaaagagagccgagccacctatttcacagggacagtcctgattt 44664349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 42951684 - 42951557
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat-aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||| ||| ||||| ||||||||||||||| | ||| |||||||||||||        ||| ||||||||||||||    ||||||||    
T  42951684 aattcctttcatgtttggaagttcttatgattctgattttttttaaatgaaatttagctacacaaaaaaattacgttttattttactagtaacctatttt 42951585  T
Q  115 aaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||| ||| |||||||||||||    
T  42951584 aaaaagagagccgagcctcctatttcac 42951557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 43967959 - 43967846
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat---aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatt 112  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |   ||| |||||||||||||        ||| ||||||||||| || ||  |||||    
T  43967959 aattcctttcatatttagaagttcttctgattctgattttttttttaaatgaaatttagctacacaaaaaaattacgttttattttaatagggatctatt 43967860  T
Q  113 ttaaaaagagagtc 126  Q
    ||||||||||||||    
T  43967859 ttaaaaagagagtc 43967846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 27074722 - 27074775
Alignment:
Q  89 gttttattttactatgggcctattttaaaaagagagtcgaacctcctatttcac 142  Q
    ||||||||||||||||| ||||||||||||||| || ||| |||| ||||||||    
T  27074722 gttttattttactatggacctattttaaaaagatagccgagcctcatatttcac 27074775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 3574910 - 3574859
Alignment:
Q  90 ttttattttactatgggcctattttaaaaagagagtcgaacctcctatttca 141  Q
    ||||||||||||  || ||||||||||| |||||||||| ||||||||||||    
T  3574910 ttttattttactgaggacctattttaaatagagagtcgagcctcctatttca 3574859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 5869134 - 5869085
Alignment:
Q  90 ttttattttactatgggcctattttaaaaagagagtcgaacctcctattt 139  Q
    ||||||||||||| || ||||||||||||||| || || |||||||||||    
T  5869134 ttttattttactagggacctattttaaaaagaaagccggacctcctattt 5869085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 35875081 - 35875117
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    ||||||||||| || ||||||||||||||||||||||    
T  35875081 tttcatgtttaaaagttcttctgattctgatttttta 35875117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 39697820 - 39697784
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    ||||||||||||||  |||||||||||||||||||||    
T  39697820 tttcatgtttagaaactcttctgattctgatttttta 39697784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 42161011 - 42160885
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| || |||||||||||||||||| |||| ||||||| ||||||       ||| |||||||||||||| ||  ||||||||    
T  42161011 aattcctttcatgtttagaagttattctgattctgattttttttaatgaaatttaactacataaagatattacgttttattttactaaggatctatttta 42160912  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    |||||||||   |||||||||||||||    
T  42160911 aaaagagagcataacctcctatttcac 42160885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 18015469 - 18015361
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| ||||||| ||||||||||||| |||| |||||||||||||        ||| ||||||||||| || ||||||||||||    
T  18015469 aattcctttcatgtttagaagttcttctaattctgattttttttaatgaaatttagctacacaaaaaaattacgttttattttattaggggcctatttta 18015370  T
Q  116 aaaagagag 124  Q
    |||||||||    
T  18015369 aaaagagag 18015361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 33910239 - 33910366
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat-aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||||||| || |||| ||||||||||||| | ||| || ||||||||||        ||| |||||||||||||| |||||||||||    
T  33910239 aattcctttcatgtttagaagttattcttattctgatttttttttaatgaagtttagctacacaaaaatattacgttttattttactaggggcctatttt 33910338  T
Q  115 aaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||| ||| |||||||||||||    
T  33910339 aaaaagagagccgagcctcctatttcac 33910366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 12251176 - 12251046
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatt---ttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatt 112  Q
    |||||||||||||||||||| |||||||||||||||||   |||| |||| |||||||||||||        ||| ||||||||||||||  ||||||||    
T  12251176 aattcctttcatgtttagaagttcttctgattctgatttttttttttaatgaaatttagctacacaaaaaaattacgttttattttactagaggcctatt 12251077  T
Q  113 tt-aaaaagagagtcgaacctcctatttcac 142  Q
    || ||||||| |||||| |||||||||||||    
T  12251076 ttaaaaaagatagtcgagcctcctatttcac 12251046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 44893918 - 44893788
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat--aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattt 113  Q
    ||||||||||||| ||| |||||||||||||| ||||||||| |  ||| ||||||| ||||||       ||| ||||||||||| || ||  ||||||    
T  44893918 aattcctttcatgcttacaacttcttctgattatgattttttttttaatgaaatttaactacataaaaaaattacgttttattttattaaggatctattt 44893819  T
Q  114 taaaaagagagtcgaacctcctatttcacgg 144  Q
    ||||||||||||||| |||||||||||||||    
T  44893818 taaaaagagagtcgagcctcctatttcacgg 44893788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 6379973 - 6379847
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||| ||||||| |||||  |||||||||||||| |||| || |||| |||||        ||| |||||||||||||||||||||||||||    
T  6379973 aattcctttcatatttagaagttctttcgattctgattttttttaatgaagtttaactacacaaaaaaattacgttttattttactatgggcctatttta 6379874  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||| ||| ||| |||| ||||||||    
T  6379873 aaaagtgagccgagcctcatatttcac 6379847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 7636212 - 7636104
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| || ||||||||||||||||||  ||| || ||||||||||        ||| |||||||| ||||| ||||||||||||    
T  7636212 aattcctttcatgtttagaagttgttctgattctgatttttttcaatgaagtttagctacacaaaaaaattacgttttattctactaggggcctatttta 7636113  T
Q  116 aaaagagag 124  Q
    |||||||||    
T  7636112 aaaagagag 7636104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 4100133 - 4100261
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgat--tttttataataaaatttag-ctacatnnnnnnnttatgttttattttactatgggcctatt 112  Q
    |||||||||||||||||||| ||||||||||||||||  ||||| |||| |||||| | |||||        ||| ||||||||||||||  |  |||||    
T  4100133 aattcctttcatgtttagaagttcttctgattctgattctttttttaatgaaattttgactacaaaaaaaaattacgttttattttactagagatctatt 4100232  T
Q  113 ttaaaaagagagtcgaacctcctatttca 141  Q
    |||||||||||| ||||||||||||||||    
T  4100233 ttaaaaagagagccgaacctcctatttca 4100261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 29730969 - 29730853
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattttaaaaaga 121  Q
    |||||||||||||| || |||||||| ||||||||||  || ||| |||||||||        |||| ||||||||||||  ||||||||||||||||||    
T  29730969 tttcatgtttagaagtttttctgattgtgatttttta--atgaaacttagctacaaaaaaaaattat-ttttattttactgggggcctattttaaaaaga 29730873  T
Q  122 gagtcgaacctcctatttca 141  Q
    ||||||| ||||||||||||    
T  29730872 gagtcgagcctcctatttca 29730853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 33419005 - 33418944
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatt-ttttataataaaatttagctaca 76  Q
    |||||| ||||||||||||||||||||||||||||||| |||| |||||||||||| |||||    
T  33419005 aattccattcatgtttagaacttcttctgattctgatttttttttaataaaatttaactaca 33418944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 29742043 - 29742094
Alignment:
Q  90 ttttattttactatgggcctattttaaaaagagagtcgaacctcctatttca 141  Q
    ||||||||||||  ||||||||||||||||||||||||| ||||||||||||    
T  29742043 ttttattttactgggggcctattttaaaaagagagtcgagcctcctatttca 29742094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 36796249 - 36796134
Alignment:
Q  27 tgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattttaaaaagagagtc 126  Q
    ||||||||||||||||||||||||||||||| |||| | ||||| |||||        |||  ||||||||||||| ||  |||||||||||||||||      
T  36796249 tgtttagaacttcttctgattctgattttttttaatgatatttaactacacaaaaaaattacattttattttactagggatctattttaaaaagagagct 36796150  T
Q  127 gaacctcctatttcac 142  Q
    ||  ||||||||||||    
T  36796149 gagtctcctatttcac 36796134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 11672839 - 11672895
Alignment:
Q  89 gttttattttactatgggcctattttaaaaagagagtcgaacctcctatttcacggg 145  Q
    |||||||||||||| ||| ||||||||||||||||  ||||||||| ||||||||||    
T  11672839 gttttattttactaggggtctattttaaaaagagaaccgaacctccaatttcacggg 11672895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 44875974 - 44875923
Alignment:
Q  90 ttttattttactatgggcctattttaaaaagagagtcgaacctcctatttca 141  Q
    |||||||||| || || |||||||||||||||||||||| ||||||||||||    
T  44875974 ttttattttagtagggacctattttaaaaagagagtcgagcctcctatttca 44875923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 40841126 - 40841072
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgattttttataataaaatttagctaca 76  Q
    |||||||||||||| ||||||| ||||||||||||| |||||||  |||||||||    
T  40841126 tttcatgtttagaagttcttctaattctgattttttttaataaagcttagctaca 40841072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 773680 - 773644
Alignment:
Q  105 ggcctattttaaaaagagagtcgaacctcctatttca 141  Q
    ||||||||||||||||||||||||||||||| |||||    
T  773680 ggcctattttaaaaagagagtcgaacctcctgtttca 773644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 28590027 - 28589991
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    |||||||||||||| ||||||||||||||||||||||    
T  28590027 tttcatgtttagaaattcttctgattctgatttttta 28589991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 3799645 - 3799611
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgattttt 56  Q
    |||||||||||||| ||||||||||||||||||||    
T  3799645 tttcatgtttagaagttcttctgattctgattttt 3799611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 141
Target Start/End: Complemental strand, 40001509 - 40001475
Alignment:
Q  107 cctattttaaaaagagagtcgaacctcctatttca 141  Q
    ||||||||||| |||||||||||||||||||||||    
T  40001509 cctattttaaatagagagtcgaacctcctatttca 40001475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 46221591 - 46221550
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatttttt 57  Q
    |||| ||||||||||||||| ||||||| |||||||||||||    
T  46221591 aatttctttcatgtttagaagttcttctaattctgatttttt 46221550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 773765 - 773729
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  773765 tttcatgtttagaagttcttctgattttgatttttta 773729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 26633545 - 26633581
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    |||||||||||||  ||||||||||||||||||||||    
T  26633545 tttcatgtttagacgttcttctgattctgatttttta 26633581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 30739307 - 30739343
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  30739307 tttcatgtatagaagttcttctgattctgatttttta 30739343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 36438233 - 36438197
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    ||||||||||| || ||||||||||||||||||||||    
T  36438233 tttcatgtttaaaagttcttctgattctgatttttta 36438197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 42312192 - 42312228
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  42312192 tttcatgtttagaagttcttctgattctaatttttta 42312228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 45990 - 45938
Alignment:
Q  90 ttttattttactatgggcctattttaaaaagagagtcgaacctcctatttcac 142  Q
    ||||||||||||| |||| |||||||||||||||||||| |||||||||||||    
T  45990 ttttattttactaggggcttattttaaaaagagagtcgagcctcctatttcac 45938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 99098 - 99134
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    |||||||||||||| ||||||||||||||||||||||    
T  99098 tttcatgtttagaagttcttctgattctgatttttta 99134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 99167 - 99218
Alignment:
Q  90 ttttattttactatgggcctattttaaaaagagagtcgaacctcctatttca 141  Q
    ||||||||||||  |||||||||||||||||||| | || ||||||||||||    
T  99167 ttttattttactgagggcctattttaaaaagagatttgagcctcctatttca 99218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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