View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1335_high_29 (Length: 221)
Name: NF1335_high_29
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1335_high_29 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 44555465 - 44555606
Alignment:
| Q |
1 |
tcaatcatgaatccatctgggtcatgaaaaaacaattgatccacttgaattccattttcttccaccattgcacgtttacaaccaattttcttatcattca |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44555465 |
tcaatcataaatccatctgggtcatgaaaaaacaattgatccacttgaattccattttcttccaccattgcacgtttacagccaattttcttatcattca |
44555564 |
T |
|
| Q |
101 |
gatatttttctactgcatccatgctttcatcacactgttcat |
142 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44555565 |
gatatttttctactgtatccatgctttcatcacactgttcat |
44555606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 44544823 - 44544964
Alignment:
| Q |
1 |
tcaatcatgaatccatctgggtcatgaaaaaacaattgatccacttgaattccattttcttccaccattgcacgtttacaaccaattttcttatcattca |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||| |||||||||| |
|
|
| T |
44544823 |
tcaatcataaatccatctgggtcatgaaaaaacaattgatccacttgaattccattttcttccaccaatgcacgcttacaaacaatttttttatcattca |
44544922 |
T |
|
| Q |
101 |
gatatttttctactgcatccatgctttcatcacactgttcat |
142 |
Q |
| |
|
||||||| ||||||||||| |||||| ||||||||||||||| |
|
|
| T |
44544923 |
gatatttctctactgcatcaatgcttccatcacactgttcat |
44544964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 51846024 - 51845888
Alignment:
| Q |
1 |
tcaatcatgaatccatctgggtcatgaaaaaacaattgatccacttgaattccattttcttccaccattgcacgtttacaaccaattttcttatcattca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||| |||| |
|
|
| T |
51846024 |
tcaatcatgaatccatctgggtcatgaaaaaacaactgatccacttgaattccattttcctcaaccattgcacgttttaaaccaattttcatatccttca |
51845925 |
T |
|
| Q |
101 |
gatatttttctactgcatccatgctttcatcacactg |
137 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51845924 |
aatatttctctactgcatccatgctttcatcacactg |
51845888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University