View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1335_high_3 (Length: 577)
Name: NF1335_high_3
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1335_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 89 - 570
Target Start/End: Complemental strand, 36999246 - 36998765
Alignment:
| Q |
89 |
acattttaggtgcaacattatttcaatcaaaattaaccataaaattacctcttagttaaggatagtttttaatgttgtgtgagctagcaaatatgtcaca |
188 |
Q |
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| T |
36999246 |
acattttaggtgcaacattatttcaatcaaaattaaccataaaattacctcttagttaaggatagtttttaatgttgtgtgagctagcaaatatgtcaca |
36999147 |
T |
|
| Q |
189 |
ccttcgcatttcaatgtaaaatgttggtattaaaaatcattataattccaggaaaaatagtatacttttgaagaactcttttttcttctttcaatgtgct |
288 |
Q |
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| T |
36999146 |
ccttcgcatttcaatgtaaaatgttggtattaaaaatcattataattccaggaaaaatagtatacttttgaagaactcttttttcttctttcaatgtgct |
36999047 |
T |
|
| Q |
289 |
agttatgggtcacatttgtgttgtttgttcctaacatgtgttgaactaatttatctccagactgagaagatgacagcacgtgatcctgtgcaaaaagaga |
388 |
Q |
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| T |
36999046 |
agttatgggtcacatttgtgttgtttgttcctaacatgtgttgaactaatttatctccagactgagaagatgacagcacgtgatcctgtgcaaaaagaga |
36998947 |
T |
|
| Q |
389 |
tggcaacccataagaaagaggcaaagatgaaccaggcagagctagataagctggcagcacgtgaacacaatgcggcggtcaaacagacgaccactgctgc |
488 |
Q |
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| T |
36998946 |
tggcaacccataagaaagaggcaaagatgaaccaggcagagctagataagctggcagcacgtgaacacaatgcggcggtcaaacagacgaccactgctgc |
36998847 |
T |
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| Q |
489 |
ggctgggcatatgggtcagccccaccacaccacagggacgactggaacggggaccgccacatactctaccactgagaattat |
570 |
Q |
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| T |
36998846 |
ggctgggcatatgggtcagccccaccacaccacagggacgactggaacggggaccgccacatactctaccactgggaattat |
36998765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 458
Target Start/End: Complemental strand, 36994182 - 36994070
Alignment:
| Q |
346 |
cagactgagaagatgacagcacgtgatcctgtgcaaaaagagatggcaacccataagaaagaggcaaagatgaaccaggcagagctagataagctggcag |
445 |
Q |
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||||| ||||||||||| |||| ||||||| |||||||||||||||||||||| |||||||| | || | | |||||||| ||||| ||||| ||| | |
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| T |
36994182 |
cagacagagaagatgacggcacatgatcctttgcaaaaagagatggcaacccaaaagaaagaagaaagggttaaccaggctgagcttgataaagaggcgg |
36994083 |
T |
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| Q |
446 |
cacgtgaacacaa |
458 |
Q |
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| T |
36994082 |
cgcgtgaacacaa |
36994070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 407
Target Start/End: Complemental strand, 36988407 - 36988346
Alignment:
| Q |
346 |
cagactgagaagatgacagcacgtgatcctgtgcaaaaagagatggcaacccataagaaaga |
407 |
Q |
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| T |
36988407 |
cagacagagaagatgacggcacatgatcctttgcaaaaggagatggcaacccaaaagaaaga |
36988346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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