View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1335_high_30 (Length: 214)
Name: NF1335_high_30
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1335_high_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 36490127 - 36489921
Alignment:
| Q |
1 |
ttacttaaatttctcacagtcctaatgatcgagaaactaataat---tttatttttatctacatgggatatttttaataaaatgttcagtcccataaaac |
97 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| |||||||||| ||| ||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36490127 |
ttacttaaaattctcacagtcctgatgatcgaggaactaataatatttttttttttatctacattggatatttttaattaaatgttcagtcccataaaac |
36490028 |
T |
|
| Q |
98 |
tgtaaaaaagtgtagcaaaaagagaaagaacattgcagatatatccccttcatattaattatatatctaactataaaatatgtcccccttgccttttccc |
197 |
Q |
| |
|
|||| |||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
36490027 |
tgtagaaaagtgtagcacaaagagatagaacattgcagatatatcaccttcatattaattatatatctaactatcaaatatgtcacccttgccttttccc |
36489928 |
T |
|
| Q |
198 |
gcctatg |
204 |
Q |
| |
|
||||||| |
|
|
| T |
36489927 |
gcctatg |
36489921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University