View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1335_high_31 (Length: 209)
Name: NF1335_high_31
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1335_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 44555465 - 44555600
Alignment:
| Q |
1 |
tcaatcatgaatccatctgggtcatgaaaaaacaattgatccacttgaattccattttcttccaccattgcacgtttacaaccaattttcttatcattca |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44555465 |
tcaatcataaatccatctgggtcatgaaaaaacaattgatccacttgaattccattttcttccaccattgcacgtttacagccaattttcttatcattca |
44555564 |
T |
|
| Q |
101 |
gatatttttctactgcatccatgctttcatctcact |
136 |
Q |
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||||||||||||||| ||||||||||||||| |||| |
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| T |
44555565 |
gatatttttctactgtatccatgctttcatcacact |
44555600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 44544823 - 44544958
Alignment:
| Q |
1 |
tcaatcatgaatccatctgggtcatgaaaaaacaattgatccacttgaattccattttcttccaccattgcacgtttacaaccaattttcttatcattca |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||| |||||||||| |
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| T |
44544823 |
tcaatcataaatccatctgggtcatgaaaaaacaattgatccacttgaattccattttcttccaccaatgcacgcttacaaacaatttttttatcattca |
44544922 |
T |
|
| Q |
101 |
gatatttttctactgcatccatgctttcatctcact |
136 |
Q |
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||||||| ||||||||||| |||||| |||| |||| |
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| T |
44544923 |
gatatttctctactgcatcaatgcttccatcacact |
44544958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 51846024 - 51845889
Alignment:
| Q |
1 |
tcaatcatgaatccatctgggtcatgaaaaaacaattgatccacttgaattccattttcttccaccattgcacgtttacaaccaattttcttatcattca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||| |||| |
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| T |
51846024 |
tcaatcatgaatccatctgggtcatgaaaaaacaactgatccacttgaattccattttcctcaaccattgcacgttttaaaccaattttcatatccttca |
51845925 |
T |
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| Q |
101 |
gatatttttctactgcatccatgctttcatctcact |
136 |
Q |
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|||||| ||||||||||||||||||||||| |||| |
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| T |
51845924 |
aatatttctctactgcatccatgctttcatcacact |
51845889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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