View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1335_high_4 (Length: 521)
Name: NF1335_high_4
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1335_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Original strand, 36107023 - 36107529
Alignment:
| Q |
1 |
aattgatgcatatcctcttaagatgttaatagacgtttcaaacttagaaaaataaaaatccagtaagttctttgaaaataaactgaagtgatgtcaagca |
100 |
Q |
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| T |
36107023 |
aattgatgcatatcctcttaagttgttaatagacgtttcaaacttagaaaaataaaaatccagtaagttctttgaaaaaaaactgaagtggtgtcaagca |
36107122 |
T |
|
| Q |
101 |
ttgtctttatatattattttcatttctatttaatgcactttttccaggacgaaacttcctctattattattttggaaaatcnnnnnnnnnnnnnnnnnnn |
200 |
Q |
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| T |
36107123 |
ttgtctttatatattgttttcatttctatttaatgcaatttttccaggacgaaacttcctctattattattttggaaaatgtttttgttttccatttttt |
36107222 |
T |
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| Q |
201 |
attaatcaaatactctagcttatggagaaaagtcaagaaaaaagactagaccataaattgattttctatgccgtacaactttcgcgtttgaaaagtagag |
300 |
Q |
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| T |
36107223 |
attaatcaaatactctagcttatggagaaaagtcaagaaaaaatactagaccataaattgattttctatgccgtacaactttcgcgtttgaaaagtagag |
36107322 |
T |
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| Q |
301 |
gatgcatcannnnnnnnnnnnngagtgcaatgttgcacgaagagttcataataaagtagcaaaccaaatttttactactataccatggatacaatgggga |
400 |
Q |
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| T |
36107323 |
gatgcatcaatatatata----gagtgcaatgttgcacgaagagttcataataaagtagcaaaccaaattgttactactataccatggatacaatgggga |
36107418 |
T |
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| Q |
401 |
aattgttttttctcacggcaacgttaacaattgtcttgtttaattcaacaacagctgcaacatcacctattcaacattttctaaattgtcttccacattc |
500 |
Q |
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| T |
36107419 |
aattgttttttctcacggcaaccttaacaattgtcttgtttaattcaacaacagctgcaacatcacctattcaacattttctaaattgtcttccacattc |
36107518 |
T |
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| Q |
501 |
ccttgtctctg |
511 |
Q |
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| T |
36107519 |
ccttgtctctg |
36107529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 6e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 324 - 511
Target Start/End: Original strand, 6838103 - 6838290
Alignment:
| Q |
324 |
agtgcaatgttgcacgaagagttcataataaagtagcaaaccaaatttttactactataccatggatacaatggggaaattgttttttctcacggcaacg |
423 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| | |||||| |
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| T |
6838103 |
agtgcaatgttggacgaagagttcatcataaagtagcaaaccaaattgttactactataccatggatacaatttggaaattgtgttttcttatggcaacc |
6838202 |
T |
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| Q |
424 |
ttaacaattgtcttgtttaattcaacaacagctgcaacatcacctattcaacattttctaaattgtcttccacattcccttgtctctg |
511 |
Q |
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| T |
6838203 |
ttaacaattgtcttgtctaattcaacaacaacagcaaaatcacctattcaacattttataaattgtctttcacattcccttgtctctg |
6838290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 6837645 - 6837714
Alignment:
| Q |
1 |
aattgatgcatatcctcttaagatgttaatagacgtttcaaacttagaaaaataaaaatccagtaagttc |
70 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6837645 |
aattgatgcaaaacctcttaagatgttaatagacgtttcaaacttagaaaaataaaaatccagtaagttc |
6837714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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