View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1335_high_6 (Length: 508)

Name: NF1335_high_6
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1335_high_6
NF1335_high_6
[»] chr2 (13 HSPs)
chr2 (1-462)||(2973417-2973875)
chr2 (62-458)||(10973548-10973947)
chr2 (3-453)||(14230705-14231156)
chr2 (14-462)||(17826436-17826893)
chr2 (346-430)||(511241-511325)
chr2 (314-462)||(11553321-11553469)
chr2 (320-462)||(16206539-16206681)
chr2 (314-462)||(11818441-11818589)
chr2 (419-462)||(20661292-20661335)
chr2 (418-462)||(23761373-23761417)
chr2 (418-462)||(23762506-23762550)
chr2 (418-462)||(23789517-23789561)
chr2 (319-351)||(36641358-36641390)
[»] chr8 (9 HSPs)
chr8 (1-462)||(10600774-10601236)
chr8 (6-462)||(20526168-20526627)
chr8 (197-357)||(42080342-42080501)
chr8 (387-462)||(23558719-23558794)
chr8 (320-462)||(14505721-14505863)
chr8 (320-462)||(37590035-37590177)
chr8 (320-462)||(15990408-15990550)
chr8 (395-461)||(19299020-19299086)
chr8 (318-354)||(35285032-35285068)
[»] chr1 (10 HSPs)
chr1 (5-462)||(47747248-47747711)
chr1 (93-462)||(47726030-47726405)
chr1 (4-214)||(6949625-6949836)
chr1 (253-462)||(16678742-16678952)
chr1 (203-462)||(2002535-2002794)
chr1 (318-462)||(41117187-41117331)
chr1 (281-462)||(34696101-34696282)
chr1 (387-462)||(30981293-30981368)
chr1 (396-462)||(49372394-49372460)
chr1 (320-357)||(10771217-10771254)
[»] scaffold1964 (1 HSPs)
scaffold1964 (1-410)||(793-1202)
[»] chr4 (15 HSPs)
chr4 (1-459)||(12354904-12355363)
chr4 (90-462)||(27087445-27087818)
chr4 (144-462)||(54027700-54028019)
chr4 (90-422)||(27066772-27067105)
chr4 (227-462)||(27066344-27066579)
chr4 (227-422)||(27066578-27066773)
chr4 (313-462)||(13686001-13686150)
chr4 (320-462)||(55227612-55227754)
chr4 (320-462)||(28860789-28860931)
chr4 (320-462)||(30859363-30859505)
chr4 (395-461)||(54823744-54823810)
chr4 (386-430)||(49745960-49746004)
chr4 (392-462)||(20527777-20527847)
chr4 (418-462)||(18878272-18878316)
chr4 (418-462)||(34301907-34301951)
[»] chr6 (5 HSPs)
chr6 (3-462)||(30140936-30141396)
chr6 (395-462)||(34355742-34355809)
chr6 (395-457)||(16416676-16416738)
chr6 (418-462)||(17752263-17752307)
chr6 (318-354)||(31029126-31029162)
[»] chr5 (13 HSPs)
chr5 (63-462)||(29754952-29755351)
chr5 (113-462)||(5335207-5335557)
chr5 (83-462)||(26683235-26683619)
chr5 (272-355)||(22864603-22864686)
chr5 (320-462)||(22292379-22292521)
chr5 (314-462)||(36044911-36045059)
chr5 (408-462)||(13948787-13948841)
chr5 (408-462)||(18759803-18759857)
chr5 (308-445)||(40299890-40300027)
chr5 (318-462)||(2157775-2157919)
chr5 (387-462)||(23976596-23976671)
chr5 (388-446)||(22864512-22864570)
chr5 (418-459)||(27493351-27493392)
[»] chr3 (10 HSPs)
chr3 (12-462)||(12370783-12371234)
chr3 (387-446)||(12749489-12749548)
chr3 (395-462)||(45680102-45680169)
chr3 (320-462)||(6006033-6006175)
chr3 (396-462)||(36144802-36144868)
chr3 (320-462)||(17790152-17790294)
chr3 (320-462)||(19098594-19098736)
chr3 (395-462)||(35906930-35906997)
chr3 (418-459)||(31935338-31935379)
chr3 (318-354)||(8566012-8566048)
[»] scaffold0643 (1 HSPs)
scaffold0643 (158-462)||(884-1190)
[»] scaffold0650 (1 HSPs)
scaffold0650 (314-456)||(307-449)
[»] scaffold0019 (1 HSPs)
scaffold0019 (206-462)||(73336-73592)
[»] chr7 (6 HSPs)
chr7 (314-462)||(48770106-48770254)
chr7 (318-462)||(15633227-15633371)
chr7 (320-462)||(32480215-32480357)
chr7 (395-462)||(3896540-3896607)
chr7 (314-351)||(33611142-33611179)
chr7 (318-354)||(47081758-47081794)
[»] scaffold0040 (1 HSPs)
scaffold0040 (320-462)||(62486-62628)
[»] scaffold0303 (1 HSPs)
scaffold0303 (320-462)||(14197-14339)


Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 2973875 - 2973417
Alignment:
Q  1 gccgtatgaaatgcaacgttgatgcggcgttcttcagtcaacgcaacaaaacaggcgtaggcatttgcatccgtgacgaagatggagtctttgttttggc 100  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2973875 gccgtatgaattgcaacgttgatgcggcgttctccagtcaacgcaacaaaacaggcgtaggcatttgcatccgtgacgaagatggagtctttgttttggc 2973776  T
Q  101 tagaacagtcacctttattggtgtatatccggttgacataggtgaagctttaggcaattaccatgcgcttcaatgggcgagtgatatg-acttagataat 199  Q
    ||||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||    
T  2973775 tagaacagtcaccttt---ggtgtatatccggttgacataggtgaagctttaggcatttaccatgcgcttcaatgg-cgagtgatatggacttagataat 2973680  T
Q  200 attgattttgaagtcgactccaaaaccacaaaagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggcttcccggtctt 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  2973679 attgattttgaagtcgactccaaaaccacaaaagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggcttcctagtctt 2973580  T
Q  300 tgctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctag 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  2973579 tgctctcgtccaagtttaccaactctcgggtggagtttgttcggccacaagctaatgttgtggcccacactctcgcaagggaagccgcatttctcgctag 2973480  T
Q  400 tcccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2973479 tcccactatgtattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 2973417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 62 - 458
Target Start/End: Complemental strand, 10973947 - 10973548
Alignment:
Q  62 catttgcatccgtgacgaagatggagtctttgttttggctagaacagtcacctttattggtgtatatccggttgacataggtgaagctttaggcaattac 161  Q
    ||||||||||||||| |||| ||| |||||||||||||| |||||| | |  ||||||||||| |||||| ||||||| |  |||||||| ||   ||||    
T  10973947 catttgcatccgtgaagaaggtggggtctttgttttggccagaacaataagttttattggtgtttatccgattgacattgaggaagctttgggtctttac 10973848  T
Q  162 catgcgcttcaatgggcgagtgatatg-acttagataatattgattttgaagtcgactccaaaaccacaaaagatgctctttactcgggtcgggaagaca 260  Q
    ||||||||||||||||| ||||||||| || | |||||||||||||||||||||||||| ||||||| |||||||||||| || ||||||| ||||||||    
T  10973847 catgcgcttcaatgggctagtgatatgcaccttgataatattgattttgaagtcgactctaaaaccataaaagatgctctatattcgggtcaggaagaca 10973748  T
Q  261 taactgaatttggcaacatcatcacggcttcccggtctttgctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaatgttgt 360  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10973747 taacagaatttggtaacatcatcacggcttcccggtctttgctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaatgtggt 10973648  T
Q  361 ggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttc--gtatacccaattgtattgaaactttgattactaatgaaatgc 458  Q
    ||| ||||||||   | |||||||| ||||||||| | ||||||| ||||||||||   |||| ||||||||||||||||||||||||||||||||||||    
T  10973647 ggctcacactctcgtaggggaagccacatttctcgtttgtcccacaatttattttcatatatatccaattgtattgaaactttgattactaatgaaatgc 10973548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 3 - 453
Target Start/End: Original strand, 14230705 - 14231156
Alignment:
Q  3 cgtatgaaatgcaacgttgatgcggcgttcttcagtcaacgcaacaaaacaggcgtaggcatttgcatccgtgacgaagatggagtctttgttttggcta 102  Q
    |||||||| || ||||||||||||||||| |  ||||| || |||||||| ||  | || |||||||||||||||||||  ||||| ||||| |||||||    
T  14230705 cgtatgaagtgtaacgttgatgcggcgttttctagtcaccgtaacaaaacgggaattggtatttgcatccgtgacgaagggggagtttttgtgttggcta 14230804  T
Q  103 gaacagtcacctttattggtgtatatccggttgacataggtgaagctttaggcaattaccatgcgcttcaatgggcgagtgatatg-acttagataatat 201  Q
    ||||| | | |||||||||||| |||||||||||||| || |||||||| |||  ||||||||||||||||||| |||| |||||| || | | ||  ||    
T  14230805 gaacaattagctttattggtgtctatccggttgacattggggaagctttgggcctttaccatgcgcttcaatggacgagcgatatgcaccttgttatcat 14230904  T
Q  202 tgattttgaagtcgactccaaaaccacaaaagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggcttcccggtctttg 301  Q
    |||| ||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||    
T  14230905 tgatattgaagtcgactctaaaaccacaaaagatggtctttattcgggtcgggaagacataaccgaatttggaaacatcatcacagcctcccggtctttg 14231004  T
Q  302 ctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtc 401  Q
    || | ||||||||||||||||||| | |||||||||||| |||||||||||||||| ||||| ||||||||  ||||||||||| |||||||||||||||    
T  14231005 cttttgtccaagtttaccaactctagagtggagtttgttaggcgacaagctaatgtggtggctcacactcttgcaagggaagccacatttctcgctagtc 14231104  T
Q  402 ccactatttattttcgtatacccaattgtattgaaactttgattactaatga 453  Q
    ||  ||| ||||||| ||||||||||||||||||||||||||||| ||||||    
T  14231105 ccgttatctattttcatatacccaattgtattgaaactttgattattaatga 14231156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 14 - 462
Target Start/End: Original strand, 17826436 - 17826893
Alignment:
Q  14 caacgttgatgcggcgttcttcagtcaacgcaacaaaacaggcgtaggcatttgcatccgtgacgaagatggagtctttgttttggctagaacagtcacc 113  Q
    |||||||||||||| |||||  ||||| || |||||||| ||| | || ||||||||||| |||||||| ||||| ||||| |||||||||||||| | |    
T  17826436 caacgttgatgcggtgttctctagtcaccgtaacaaaacgggcattggtatttgcatccgcgacgaagagggagtatttgtgttggctagaacagttagc 17826535  T
Q  114 tttatt----ggtgtatatccggttgacataggtgaagctttaggcaattaccatgcgcttcaatgggcgagtgatatg-acttagataatattgatttt 208  Q
    ||||||    ||||| |||||||||||||| || ||||||||  ||  ||||||||||||||||||| | || |||||| || | |||||||||||||||    
T  17826536 tttatttcttggtgtctatccggttgacattggggaagctttgagcctttaccatgcgcttcaatggacaagcgatatgcaccttgataatattgatttt 17826635  T
Q  209 gaagtcgactccaaaaccacaaaagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcac--ggcttcccggtc--tttgctc 304  Q
    ||||||||||| |||| |||||||||||||||||| ||| |||||||||| ||||| |||||||| |||||||||||   |||||| ||||  ||| |||    
T  17826636 gaagtcgactctaaaatcacaaaagatgctctttattcgtgtcgggaagatataaccgaatttggtaacatcatcacagagcttcctggtctttttactc 17826735  T
Q  305 tcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtccca 404  Q
    | ||||||||||| |||||||  ||||||||||| | ||||||||| |||||| ||||| |||||| |   | | ||||||  ||| ||||||||||||     
T  17826736 ttgtccaagtttagcaactctacggtggagtttgctaggcgacaagataatgtggtggctcacactgttgtaggagaagccatattcctcgctagtcccg 17826835  T
Q  405 ctatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||||||||| || ||||| |||||||||||||||||||||||  |||||||| |||||    
T  17826836 ctatttattatcatatactcaattgtattgaaactttgattatcaatgaaatactata 17826893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 346 - 430
Target Start/End: Complemental strand, 511325 - 511241
Alignment:
Q  346 acaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcgtatacccaattgt 430  Q
    ||||| |||||| ||||| ||||||||  |||| |||||| ||||||||||||||||| |||||||||||| |||||||||||||    
T  511325 acaagttaatgtggtggctcacactcttgcaagagaagccacatttctcgctagtcccgctatttattttcatatacccaattgt 511241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 314 - 462
Target Start/End: Original strand, 11553321 - 11553469
Alignment:
Q  314 tttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttatt 413  Q
    |||||||||||| |||||||||||  |||||||||||||||||  || |  ||   |||  || | |||||| |||| || ||||||||||| |||||||    
T  11553321 tttaccaactctagggtggagtttactcggcgacaagctaatgaggttgatcatgttctcgcaggagaagccacattactagctagtcccaccatttatt 11553420  T
Q  414 ttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||| ||||||| | | |||||||||| | |||| ||||||||| |||||    
T  11553421 ttcatatacccgaatatattgaaactcttattattaatgaaatactata 11553469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 320 - 462
Target Start/End: Original strand, 16206539 - 16206681
Alignment:
Q  320 aactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcgta 419  Q
    |||||| |||||||||||||| |||||||||| || || || || ||  ||||  ||||||| ||| | | | | ||||||||| |  ||||||||  ||    
T  16206539 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaata 16206638  T
Q  420 tacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    |||||||||||||||||||| | ||||  ||||||||||||||    
T  16206639 tacccaattgtattgaaactcttattataaatgaaatgctata 16206681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 462
Target Start/End: Complemental strand, 11818589 - 11818441
Alignment:
Q  314 tttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttatt 413  Q
    |||||||||||| |||||||||||||| |||||||||| || |  || || ||   |||  || | |||||| | || || |||||||||  ||||||||    
T  11818589 tttaccaactctagggtggagtttgttaggcgacaagcaaacgaggttgctcatgttcttgcaggagaagccacgttactagctagtcccgttatttatt 11818490  T
Q  414 ttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    |||  |||||||||| ||||||| || | |||| |||||||||||||||    
T  11818489 ttcagatacccaattatattgaacctcttattattaatgaaatgctata 11818441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 462
Target Start/End: Original strand, 20661292 - 20661335
Alignment:
Q  419 atacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    |||||||||||||||||| |||||||||  ||||||||||||||    
T  20661292 atacccaattgtattgaatctttgattatcaatgaaatgctata 20661335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 462
Target Start/End: Complemental strand, 23761417 - 23761373
Alignment:
Q  418 tatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||||||| |||||||||||||| ||||||  ||||||||||||||    
T  23761417 tatacccgattgtattgaaactctgattatcaatgaaatgctata 23761373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 462
Target Start/End: Complemental strand, 23762550 - 23762506
Alignment:
Q  418 tatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||||||| |||||||||||||| ||||||  ||||||||||||||    
T  23762550 tatacccgattgtattgaaactctgattatcaatgaaatgctata 23762506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 462
Target Start/End: Complemental strand, 23789561 - 23789517
Alignment:
Q  418 tatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||||||| |||||||||||||| ||||||  ||||||||||||||    
T  23789561 tatacccgattgtattgaaactctgattatcaatgaaatgctata 23789517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 351
Target Start/End: Original strand, 36641358 - 36641390
Alignment:
Q  319 caactctcgggtggagtttgttcggcgacaagc 351  Q
    |||||||||||||||||||||| ||||||||||    
T  36641358 caactctcgggtggagtttgttaggcgacaagc 36641390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 10600774 - 10601236
Alignment:
Q  1 gccgtatgaaatgcaacgttgatgcggcgttcttcagtcaacgcaacaaaacaggcgtaggcatttgcatccgtgacgaagatggagtctttgttttggc 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||  | |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10600774 gccgtatgaaatgcaacgttgatgcggcgttctccagtcaacatatcaaaacaggcgtaggcatttgcattcgtgacgaagatggagtctttgttttggc 10600873  T
Q  101 tagaacagtcacctttattggtgtatatccggttgacataggtgaagctttaggcaattaccatgcgcttcaatgggcgagtgatatg-acttagataat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||    
T  10600874 tagaacagtcacctttattggtgtatatccggttgacataggtgaagctttaggcctttaccatgcgcttcaatgggcgagtgatatgcacttagataat 10600973  T
Q  200 attgattttgaagtcgactccaaaaccacaaaagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggcttcccggtctt 299  Q
    |||||||||||||| ||||||||||||||||||||  |||||| ||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  10600974 attgattttgaagttgactccaaaaccacaaaagacactctttgctcaggtcgggaagacataactgaatttggcaacatcatcacgactttccggtctt 10601073  T
Q  300 tgctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctag 399  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||  || |||||||| |||||||||||||    
T  10601074 tgctctcgtccaagtttaccaactctcaggtggagtttgttcggcgacaagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctag 10601173  T
Q  400 tcccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  10601174 tcccactatttatcttcatatacccaattatattgaaactttgattactaatgaaatgctata 10601236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 6 - 462
Target Start/End: Complemental strand, 20526627 - 20526168
Alignment:
Q  6 atgaaatgcaacgttgatgcggcgttcttcagtcaacgcaacaaaacaggcgtaggcatttgcatccgtgacgaagatggagtctttgttttggctagaa 105  Q
    ||||| |||||| ||| |||||||||||  ||||| || ||||||||   | | ||||||||||||| ||| |||| |||||||||||||||||||||||    
T  20526627 atgaagtgcaacattggtgcggcgttctctagtcaccgtaacaaaaccaacatcggcatttgcatccatgatgaaggtggagtctttgttttggctagaa 20526528  T
Q  106 cagtcacctttattggtgtatatccggttgacataggtgaagctttaggcaattaccatgcgcttcaatgggcgagtgatatg-acttagataatattga 204  Q
    || |||  |||| |||||| ||||||||||| || || ||||| || ||   | ||| ||| || ||||||| || ||||||| || | |||||||| ||    
T  20526527 cattcaattttaatggtgtgtatccggttgatattggggaagcattgggtcttcaccttgctctccaatgggtgaatgatatgcaccttgataatatgga 20526428  T
Q  205 ttttgaagtcgactccaaaaccacaaaagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggcttcccggtctttgctc 304  Q
    |||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||||||||||| | || ||||| ||||  |||||||||| |||||||    
T  20526427 ttttgaagtctactctaaaatcacaaaagatgctatttactcgggtcgggaagacataactgaagtcggtaacattatcattgcttcccggtttttgctc 20526328  T
Q  305 tcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtccca 404  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| || |||||  || |||| ||| |||||||| |||||| ||    
T  20526327 tcgttcaaatttaccaactctcgggtggagtttgttcggcgacaagttaatgtggtggctcatactctcgcaggggaggccacatttctcactagtcgca 20526228  T
Q  405 ctatttattttcgtatacccaattgtattgaaactttgat--tactaatgaaatgctata 462  Q
    |||||||||||| |||||||||||||||||||||||| ||  ||||||||||||||||||    
T  20526227 ctatttattttcatatacccaattgtattgaaactttaattatactaatgaaatgctata 20526168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 197 - 357
Target Start/End: Original strand, 42080342 - 42080501
Alignment:
Q  197 aatattgattttgaagtcgactccaaaaccacaaaagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggcttcccggt 296  Q
    ||||| || |||||||| || ||||||||||| |||| ||   ||||||| ||| ||||||||||  ||||||| || || || || | |||||||||||    
T  42080342 aatatcgactttgaagttgattccaaaaccacgaaagttggcatttactcaggtagggaagacatctctgaattaggtaatattataatggcttcccggt 42080441  T
Q  297 ctttgctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaatgt 357  Q
      || ||||| |||||||| | |||||||||||||||||||| | || ||||||| |||||    
T  42080442 tctt-ctctcttccaagttcaacaactctcgggtggagtttgctaggagacaagcaaatgt 42080501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 462
Target Start/End: Original strand, 23558719 - 23558794
Alignment:
Q  387 catttctcgctagtcccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||||||| ||||||||||||||||||||||  |||||| | |||||||| |||||||||  |||||||||| ||||    
T  23558719 catttctagctagtcccactatttattttcacataccccaatgtattgagactttgattgttaatgaaatgttata 23558794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 320 - 462
Target Start/End: Original strand, 14505721 - 14505863
Alignment:
Q  320 aactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcgta 419  Q
    |||||| |||||||||||||| |||||||||| || || || || ||  ||||  ||||||| ||| | | | | ||||||||| |  ||||||||  ||    
T  14505721 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaata 14505820  T
Q  420 tacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    |||||||||||||||||||| | ||||  ||||||||||||||    
T  14505821 tacccaattgtattgaaactcttattataaatgaaatgctata 14505863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 320 - 462
Target Start/End: Complemental strand, 37590177 - 37590035
Alignment:
Q  320 aactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcgta 419  Q
    |||||| |||||||||||||| |||||||||| || || || || ||  ||||  ||||||| ||| | | | | |||||| || |  ||||||||  ||    
T  37590177 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagttccgccgtttattttaata 37590078  T
Q  420 tacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    |||||||||||||||||||| | |||| |||||||||||||||    
T  37590077 tacccaattgtattgaaactcttattattaatgaaatgctata 37590035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 462
Target Start/End: Complemental strand, 15990550 - 15990408
Alignment:
Q  320 aactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcgta 419  Q
    |||||| |||||||||||||| ||||||||||  | || || || ||  ||||  ||||||| ||| | | | | ||||||||| |  ||||||||  ||    
T  15990550 aactctagggtggagtttgttaggcgacaagcctacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaata 15990451  T
Q  420 tacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    |||||||||||||||||||| | ||||  ||||||||||||||    
T  15990450 tacccaattgtattgaaactcttattataaatgaaatgctata 15990408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 461
Target Start/End: Complemental strand, 19299086 - 19299020
Alignment:
Q  395 gctagtcccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctat 461  Q
    ||||||||| |  ||||||||  |||||||||||||||||||| ||| |||| ||||||||||||||    
T  19299086 gctagtcccgccgtttattttgatatacccaattgtattgaaatttttattattaatgaaatgctat 19299020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 35285032 - 35285068
Alignment:
Q  318 ccaactctcgggtggagtttgttcggcgacaagctaa 354  Q
    |||||||| |||||||||||||| |||||||||||||    
T  35285032 ccaactctagggtggagtttgttaggcgacaagctaa 35285068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 5 - 462
Target Start/End: Original strand, 47747248 - 47747711
Alignment:
Q  5 tatgaaatgcaacgttgatgcggcgttcttcagtcaacgcaacaaaacaggcgtaggcatttgcatccgtgacgaagatggagtctttgttttggctaga 104  Q
    |||||||||||||||||||| |||||| | ||||||||| ||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  47747248 tatgaaatgcaacgttgatgtggcgttttccagtcaacgtaacaaaagaggcgtaggcatttgcattcgtgactaagatggagtctttgttttggctaga 47747347  T
Q  105 acagtcacctttattggtgtatatccggttgacataggtgaagctttaggcaattaccatgcgcttcaatgggcgagtgatatg-acttagataatattg 203  Q
    |||||||||||| |||||||||| ||| |||||||||||||||||||||||  |||||||||| |||||||||||||||||||| ||||||||||| |||    
T  47747348 acagtcacctttgttggtgtatacccgattgacataggtgaagctttaggcctttaccatgcgattcaatgggcgagtgatatgcacttagataattttg 47747447  T
Q  204 attttgaagtcgactccaaaaccacaaaagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggcttcccggtctttgct 303  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  47747448 attttgaagtcgactccaaaaccacaaaagacgctctttactcgagtcgggaagacataactgaatttggcaacatcatcacatattcccggtctttgct 47747547  T
Q  304 ctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagcta-----atgttgtggcccacactctatcaagggaagccgcatttctcgcta 398  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||     |||| ||| | ||||||||  || || ||||| ||||||||||||    
T  47747548 ctcgtccaagtttaccaactctcgagtggagtttgtttggcgacaagctattataatgtggtgtctcacactctcgcagggaaagccacatttctcgcta 47747647  T
Q  399 gtcccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47747648 gtcccactatttattttcatatacccaattgtattgaaactttgattactaatgaaatgctata 47747711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 93 - 462
Target Start/End: Original strand, 47726030 - 47726405
Alignment:
Q  93 gttttggctagaacagtcacctttattggtgtatatccggttgacataggtgaagctttaggcaattaccatgcgcttcaatgggcgagtgatatg-act 191  Q
    |||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||  |||||||||| |||||||||||||||||||| |||    
T  47726030 gttttggctagaacagtcacctttgttggtgtatacccgattgacataggtgaagctttaggcctttaccatgcgattcaatgggcgagtgatatgcact 47726129  T
Q  192 tagataatattgattttgaagtcgactccaaaaccacaaaagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggcttc 291  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||   |||    
T  47726130 tagataattttgattttgaagtcgactccaaaaccacaaaagacgctctttactcgagtcgggaagacataactgaatttggcaacatcatcacatattc 47726229  T
Q  292 ccggtctttgctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagcta-----atgttgtggcccacactctatcaagggaagccg 386  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||     |||| ||| | ||||||||  || || |||||     
T  47726230 ccggtctttgctctcgtccaagtttaccaactctcgagtggagtttgtttggcgacaagctattataatgtggtgtctcacactctcgcagggaaagcca 47726329  T
Q  387 catttctcgctagtcccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47726330 catttctcgctagtcccactatttattttcatatacccaattgtattgaaactttgattactaatgaaatgctata 47726405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 6949625 - 6949836
Alignment:
Q  4 gtatgaaatgcaacgttgatgcggcgttcttcagtcaacgcaacaaaacaggcgtaggcatttgcatccgtgacgaagatggagtctttgttttggctag 103  Q
    |||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6949625 gtatgaaacgcaacgttgatgcggagttctccagtcaacgcaacaaaacaggcgtaggcatttgcatccgtgacgaagatggagtctttgttttggctag 6949724  T
Q  104 aacagtcacctttattggtgtatatccggttgacataggtgaagctttaggcaattaccatgcgcttcaatgggcgagtgatatg-acttagataatatt 202  Q
    |||| |||||||||||||||||||||| ||||||| |||||||| |||||||  ||||||||||||||||||||||||||||||| ||||||||||||||    
T  6949725 aacaatcacctttattggtgtatatcctgttgacaaaggtgaagttttaggcctttaccatgcgcttcaatgggcgagtgatatgcacttagataatatt 6949824  T
Q  203 gattttgaagtc 214  Q
    ||||||||||||    
T  6949825 gattttgaagtc 6949836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 253 - 462
Target Start/End: Complemental strand, 16678952 - 16678742
Alignment:
Q  253 ggaagacataa-ctgaatttggcaacatcatcacggcttcccggtctttgctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagc 351  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||      
T  16678952 ggaagacataaactgaatttggcaacatcatcacggcttcccggtctttgctctcgtcaaagtttaccaactctcgcgtggagtttgttcggcgacaaat 16678853  T
Q  352 taatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcgtatacccaattgtattgaaactttgattactaat 451  Q
    |||||| ||||| ||||||||  || |||||||| ||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  16678852 taatgtggtggctcacactctcgcaggggaagccacatttctcgcttgtcccactatttattttcatatacccaattggattgaaactttgattactaat 16678753  T
Q  452 gaaatgctata 462  Q
    |||||||||||    
T  16678752 gaaatgctata 16678742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 462
Target Start/End: Complemental strand, 2002794 - 2002535
Alignment:
Q  203 gattttgaagtcgactccaaaaccacaaaagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggcttcccggtctttgc 302  Q
    |||||||| |||||||| ||||||||||| || |   ||||||| || ||||||||||||  |||  ||||||| || || ||||||| |||  | ||||    
T  2002794 gattttgaggtcgactctaaaaccacaaaggacggaatttactccggacgggaagacatatatgatcttggcaatattattacggcttgccgaacattgc 2002695  T
Q  303 tctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcc 402  Q
    ||   || |||||    ||||||||||||||||||||  || ||||||| ||||| || || || |||||  || | ||  || ||||||||||||||||    
T  2002694 tcctttctaagttcgttaactctcgggtggagtttgtcaggagacaagcaaatgtggttgctcatactctcgcatgagagaccacatttctcgctagtcc 2002595  T
Q  403 cactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
       || |||||||  |||||| | |||||||||||||||||||| |||||| ||||||||    
T  2002594 agttacttattttattatacctagttgtattgaaactttgattattaatgagatgctata 2002535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 462
Target Start/End: Original strand, 41117187 - 41117331
Alignment:
Q  318 ccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcg 417  Q
    ||||||||||||||||||||||| |||||||||| ||||  || || ||  ||||  |||| |||||| | || || |||||||||||  ||||||||      
T  41117187 ccaactctcgggtggagtttgttaggcgacaagccaatgaggttgctcatgctcttgcaagagaagccacgttactagctagtcccaccgtttattttga 41117286  T
Q  418 tatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
     ||||||||||||||| ||||| | ||||  ||||||||||||||    
T  41117287 gatacccaattgtattcaaactattattatcaatgaaatgctata 41117331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 462
Target Start/End: Complemental strand, 34696282 - 34696101
Alignment:
Q  281 atcacggcttcccggtctttgctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaaggg 380  Q
    |||||||||||||||  | | ||||| |||||||| | |||||||||||||||||||| | || ||||||  ||||| || || || |||||   | | |    
T  34696282 atcacggcttcccggattcttctctcttccaagttcaacaactctcgggtggagtttgctaggagacaagaaaatgtggttgctcatactctcgaaggag 34696183  T
Q  381 aagccgcatttctcgctagtcccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    |  || | ||||| ||||||| |  | ||||||||| ||||||| ||||||||||||||||||||| |||||| ||| ||||    
T  34696182 agaccacgtttctagctagtctcgttgtttattttcatataccccattgtattgaaactttgattattaatgatatgatata 34696101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 462
Target Start/End: Original strand, 30981293 - 30981368
Alignment:
Q  387 catttctcgctagtcccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    |||||||||||||| ||  || |||||||  |||||||| ||||||||||||||| |||| |||||| ||| ||||    
T  30981293 catttctcgctagttccgttacttattttgttatacccagttgtattgaaactttaattattaatgacatgttata 30981368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 462
Target Start/End: Original strand, 49372394 - 49372460
Alignment:
Q  396 ctagtcccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||||||||||| |||||| |   ||||||||||||||||||||| | ||||  ||||||||||||||    
T  49372394 ctagtcccactgtttattataaaatacccaattgtattgaaactcttattatcaatgaaatgctata 49372460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 10771217 - 10771254
Alignment:
Q  320 aactctcgggtggagtttgttcggcgacaagctaatgt 357  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  10771217 aactctcgggtggagtttgttaggcgacaagccaatgt 10771254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1964 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: scaffold1964
Description:

Target: scaffold1964; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 793 - 1202
Alignment:
Q  1 gccgtatgaaatgcaacgttgatgcggcgttcttcagtcaacgcaacaaaacaggcgtaggcatttgcatccgtgacgaagatggagtctttgttttggc 100  Q
    ||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||| ||||||| ||| | |||||||||||||||||||||||||||    
T  793 gccgtatgaaatgcaacgttgatgcggcgttctccagtcaaggtaacaaaacaggcgttggcattttcattcttgacgaagatggagtctttgttttggc 892  T
Q  101 tagaacagtcacctttattggtgtatatccggttgacataggtgaagctttaggcaattaccatgcgcttcaatgggcgagtgatatg-acttagataat 199  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||  ||||||||||||||||| ||||||||||||| |||||||||||    
T  893 tagaacagtcacctt-attgatgtatatccggttgacataggtgaagctttaagcctttaccatgcgcttcaatcggcgagtgatatgcacttagataat 991  T
Q  200 attgattttgaagtcgactccaaaaccacaaaagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggcttcccggtctt 299  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||    
T  992 attgattttgaagtcgactccaaaaccacaaaagacgctctttactcgggtcgggaagacataactgaatttggcaacattatcacggctttccagtctt 1091  T
Q  300 tgctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctag 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||  || |||||||| |||||||||||||    
T  1092 tgctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctag 1191  T
Q  400 tcccactattt 410  Q
    | |||||||||    
T  1192 ttccactattt 1202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 12354904 - 12355363
Alignment:
Q  1 gccgtatgaaatgcaacgttgatgcggcgttcttcagtcaacgcaacaaaacaggcgtaggcatttgcatccgtgacgaagatggagtctttgttttggc 100  Q
    |||||||||| || |||||||| |||||||| |  ||||| || || ||||| ||  | || |||||||||||||||||||  ||||| ||||| |||||    
T  12354904 gccgtatgaagtgtaacgttgacgcggcgttttctagtcaccgtaataaaacgggaattggtatttgcatccgtgacgaagggggagtttttgtgttggc 12355003  T
Q  101 tagaacagtcacctttattggtgtatatccggttgacataggtgaagctttaggcaattaccatgcgcttcaatgggcgagtgatatg-acttagataat 199  Q
    ||||||| | | |||||||||||| |||||||||||||| || |||||||| |||  |||||||||| ||||||||||||| |||||| || | |||||     
T  12355004 tagaacaattagctttattggtgtctatccggttgacattggggaagctttgggcctttaccatgcgattcaatgggcgagcgatatgcaccttgataac 12355103  T
Q  200 attgattttgaagtcgactccaaaaccacaaaagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggcttcccggtctt 299  Q
    |||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||| |||||||| || |||||||| ||||||||||| |    
T  12355104 attgattttgaagtcgactctaaaaccacaaaagatggtctttattcgggtcgggaagacataacggaatttggaaatatcatcacagcttcccggtcct 12355203  T
Q  300 tgctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctag 399  Q
    |||| | ||||||||||||||||||| |||||||||||||| ||||||||| |||||| ||||| ||||||||  ||| |||| || |||||||||||||    
T  12355204 tgcttttgtccaagtttaccaactctagggtggagtttgttaggcgacaaggtaatgtggtggctcacactcttccaaaggaaaccacatttctcgctag 12355303  T
Q  400 tcccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgct 459  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  12355304 tcccactatctattttcatatacccaattgtattgaaactttgattattaatgaaatgct 12355363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 90 - 462
Target Start/End: Complemental strand, 27087818 - 27087445
Alignment:
Q  90 tttgttttggctagaacagtcacctttattggtgtatatccggttgacataggtgaagctttaggcaattaccatgcgcttcaatgggcgagtgatatg- 188  Q
    ||||| |||| ||||||| | | |||||||||||| ||||| |||||||| || ||||||||  ||  ||||||||||||||||||||||||  |||||     
T  27087818 tttgtgttggatagaacaattagctttattggtgtctatccagttgacattggggaagctttgagcctttaccatgcgcttcaatgggcgagcaatatgc 27087719  T
Q  189 acttagataatattgattttgaagtcgactccaaaaccacaaaagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggc 288  Q
    || | ||||| |||||||||||||||||||| ||||||||| |||| | | |||| |||||||||||||||||||  |||||||| |||||||||||  |    
T  27087718 accttgataacattgattttgaagtcgactctaaaaccacagaagacggtatttattcgggtcgggaagacataatggaatttggaaacatcatcacaac 27087619  T
Q  289 ttcccggtctttgctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgca 388  Q
    || |||||||||||| | ||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||  ||||||||  ||| ||||||| ||    
T  27087618 tttccggtctttgcttttgtccaagtttaccaactctagggtggagtttgttaggcgacaagctaatgtggtgggtcacactcttgcaaaggaagccaca 27087519  T
Q  389 tttctcgctagtcccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||||||||||||||| |||| ||||||| ||||| ||||||||||||||||||||||| |||||||||||||||    
T  27087518 tttctcgctagtcccgctatctattttcatatactcaattgtattgaaactttgattattaatgaaatgctata 27087445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 144 - 462
Target Start/End: Complemental strand, 54028019 - 54027700
Alignment:
Q  144 gaagctttaggcaattaccatgcgcttcaatgggcgagtgatatg-acttagataatattgattttgaagtcgactccaaaaccacaaaagatgctcttt 242  Q
    |||||| |||||  |||||||||||||||||||||||| |||||| || | ||||||||||||| ||| || ||||| |||||||||||||| |||||||    
T  54028019 gaagctctaggcctttaccatgcgcttcaatgggcgagcgatatgcaccttgataatattgattgtgaggttgactctaaaaccacaaaagacgctcttt 54027920  T
Q  243 actcgggtcgggaagacataactgaatttggcaacatcatcacggcttcccggtctttgctctcgtccaagtttaccaactctcgggtggagtttgttcg 342  Q
      ||| |||||||||| ||||| |||||||| |||||||||||  ||||||||||||| |||| ||||||||||||||||||| ||||||||||| || |    
T  54027919 gttcgagtcgggaagatataaccgaatttggtaacatcatcacaacttcccggtctttactcttgtccaagtttaccaactctagggtggagttttttag 54027820  T
Q  343 gcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcgtatacccaattgtattgaaactttg 442  Q
    ||||||||||||||| ||||| ||||||||   | |||||||| |||||||||||| |||| |||||||||||| ||||||||||| |||||||||||||    
T  54027819 gcgacaagctaatgtggtggctcacactcttgtaggggaagccacatttctcgctactcccgctatttattttcatatacccaattatattgaaactttg 54027720  T
Q  443 attactaatgaaatgctata 462  Q
    |||| |||||||||| ||||    
T  54027719 attattaatgaaatgatata 54027700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 90 - 422
Target Start/End: Complemental strand, 27067105 - 27066772
Alignment:
Q  90 tttgttttggctagaacagtcacctttattggtgtatatccggttgacataggtgaagctttaggcaattaccatgcgcttcaatgggcgagtgatatg- 188  Q
    ||||| |||| ||||||| | | |||||||||||| ||||| |||||||| || ||||||||  ||  ||||||||||||||||||||||||  |||||     
T  27067105 tttgtgttggatagaacaattagctttattggtgtctatccagttgacattggggaagctttgagcctttaccatgcgcttcaatgggcgagcaatatgc 27067006  T
Q  189 acttagataatattgattttgaagtcgactccaaaaccacaaaagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggc 288  Q
    || | ||||| |||||||||||||||||||| ||||||||| |||| | | |||| |||||||||||||||||||  |||||||| |||||||||||  |    
T  27067005 accttgataacattgattttgaagtcgactctaaaaccacagaagacggtatttattcgggtcgggaagacataatggaatttggaaacatcatcacaac 27066906  T
Q  289 ttcccggtctttgctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgca 388  Q
    || |||||||||||| | ||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||  ||||||||  ||| ||||||| ||    
T  27066905 tttccggtctttgcttttgtccaagtttaccaactctagggtggagtttgttaggcgacaagctaatgtggtgggtcacactcttgcaaaggaagccaca 27066806  T
Q  389 tttctcgctagtcccactatttattttcgtatac 422  Q
    ||||||||||||||| |||| ||||||| |||||    
T  27066805 tttctcgctagtcccgctatctattttcatatac 27066772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 227 - 462
Target Start/End: Complemental strand, 27066579 - 27066344
Alignment:
Q  227 acaaaagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggcttcccggtctttgctctcgtccaagtttaccaactctc 326  Q
    |||||||| | |||||| |||||||||||||||||||  |||||||| |||||||||||  |||||||||||||||| | |||||||||||||||||||     
T  27066579 acaaaagacggtctttattcgggtcgggaagacataatggaatttggaaacatcatcacaacttcccggtctttgcttttgtccaagtttaccaactcta 27066480  T
Q  327 gggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcgtatacccaa 426  Q
    |||||||||||||| |||||||||||||||| ||||  ||||||||  ||| ||||||| ||||||||||||||||| |||| ||||||| ||||| |||    
T  27066479 gggtggagtttgttgggcgacaagctaatgtggtgggtcacactcttgcaaaggaagccacatttctcgctagtcccgctatctattttcatatactcaa 27066380  T
Q  427 ttgtattgaaactttgattactaatgaaatgctata 462  Q
    |||||||||||||||||||| |||||||||||||||    
T  27066379 ttgtattgaaactttgattattaatgaaatgctata 27066344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 227 - 422
Target Start/End: Complemental strand, 27066773 - 27066578
Alignment:
Q  227 acaaaagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggcttcccggtctttgctctcgtccaagtttaccaactctc 326  Q
    |||||||| | |||||| |||||||||||||||||||  |||||||| |||||||||||  ||| |||||||||||| | |||||||||||||||||||     
T  27066773 acaaaagacggtctttattcgggtcgggaagacataatggaatttggaaacatcatcacaactttccggtctttgcttttgtccaagtttaccaactcta 27066674  T
Q  327 gggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcgtatac 422  Q
    |||||||||||||| |||||||||||||||| ||||  ||||||||  ||| ||||||| ||||||||||||||||| |||| ||||||| |||||    
T  27066673 gggtggagtttgttaggcgacaagctaatgtggtgggtcacactcttgcaaaggaagccacatttctcgctagtcccgctatctattttcatatac 27066578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 462
Target Start/End: Original strand, 13686001 - 13686150
Alignment:
Q  313 gtttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttat 412  Q
    ||||||||||||| |||||||||||||| |||||||||| || |  || || ||   |||  |||| |||| | | || || |||||||||| | |||||    
T  13686001 gtttaccaactctagggtggagtttgttaggcgacaagcaaacggggttgctcatgttcttgcaagagaagtcacgttactagctagtcccattgtttat 13686100  T
Q  413 tttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    |||| ||||||| ||||||||||| || | |||| |||||||||||||||    
T  13686101 tttcatatacccgattgtattgaatctcttattattaatgaaatgctata 13686150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 320 - 462
Target Start/End: Original strand, 55227612 - 55227754
Alignment:
Q  320 aactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcgta 419  Q
    |||||| |||||||||||||| |||||||| | || || || || ||  ||||  ||||||| ||| ||| | | ||||||||| |  ||||||||  ||    
T  55227612 aactctagggtggagtttgttaggcgacaaaccaacgtggttgctcatgctcttgcaagggaggccacatctttagctagtcccgccgtttattttaata 55227711  T
Q  420 tacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    |||||||||||||||||||| | ||||  ||||||||||||||    
T  55227712 tacccaattgtattgaaactcttattataaatgaaatgctata 55227754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 462
Target Start/End: Original strand, 28860789 - 28860931
Alignment:
Q  320 aactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcgta 419  Q
    ||||||||||||||||||||| |||||||||| ||||| || || ||||||||  | || || ||| ||||  | |||||| ||    |||||| |  ||    
T  28860789 aactctcgggtggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgcta 28860888  T
Q  420 tacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||| ||||||||||||| |||||||||  ||||| ||||||||    
T  28860889 tactcaattgtattgaatctttgattataaatgatatgctata 28860931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 462
Target Start/End: Original strand, 30859363 - 30859505
Alignment:
Q  320 aactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcgta 419  Q
    |||||| |||||||||||||| |||||||||| || || || || ||  ||||  ||||||| ||| | | | |  |||||||| |  ||||||||  ||    
T  30859363 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttaactagtcccgccgtttattttaata 30859462  T
Q  420 tacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    |||||||||||||||||||| | ||||  ||||||||||||||    
T  30859463 tacccaattgtattgaaactcttattataaatgaaatgctata 30859505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 461
Target Start/End: Original strand, 54823744 - 54823810
Alignment:
Q  395 gctagtcccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctat 461  Q
    ||||||||| |  ||||||||  |||||||||||||||||||| ||| |||| ||||||||||||||    
T  54823744 gctagtcccgccgtttattttgatatacccaattgtattgaaatttttattattaatgaaatgctat 54823810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 430
Target Start/End: Complemental strand, 49746004 - 49745960
Alignment:
Q  386 gcatttctcgctagtcccactatttattttcgtatacccaattgt 430  Q
    |||| ||||||| |||||||||||||||||| |||||||||||||    
T  49746004 gcatatctcgcttgtcccactatttattttcatatacccaattgt 49745960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 462
Target Start/End: Complemental strand, 20527847 - 20527777
Alignment:
Q  392 ctcgctagtcccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    |||||||||||| | ||||||| |  ||||||| |||||||||||||| | ||||  ||||||||||||||    
T  20527847 ctcgctagtcccgccatttattatgatatacccgattgtattgaaactcttattatcaatgaaatgctata 20527777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 462
Target Start/End: Original strand, 18878272 - 18878316
Alignment:
Q  418 tatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    |||||||| ||||||||||||| | |||| |||||||||||||||    
T  18878272 tatacccacttgtattgaaactattattattaatgaaatgctata 18878316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 462
Target Start/End: Original strand, 34301907 - 34301951
Alignment:
Q  418 tatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||||||||||||||||||| |||| || | |||||||||||||||    
T  34301907 tatacccaattgtattgaatctttaatcattaatgaaatgctata 34301951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 3 - 462
Target Start/End: Complemental strand, 30141396 - 30140936
Alignment:
Q  3 cgtatgaaatgcaacgttgatgcggcgttcttcagtcaacgcaacaaaacaggcgtaggcatttgcatccgtgacgaagatggagtctttgttttggcta 102  Q
    |||||||| || |||||||| ||||| || |  ||||| || || ||||||||  | || |||||||||||||||||||   |||| || || |||||||    
T  30141396 cgtatgaagtgtaacgttgacgcggcattttctagtcaccgtaataaaacaggaattggtatttgcatccgtgacgaagggagagttttcgtgttggcta 30141297  T
Q  103 gaacagtcacctttattggtgtatatccggttgacataggtgaagctttaggcaattaccatgcgcttcaatgggcgagtgatatg-acttagataatat 201  Q
    ||||| | |  ||||||||||| |||||||||||||| || |||||||| |||  |||||||||||||||||||||||| |||||| || | ||||| ||    
T  30141296 gaacaattagttttattggtgtctatccggttgacattggggaagctttgggcctttaccatgcgcttcaatgggcgagcgatatgcaccttgataacat 30141197  T
Q  202 tgattttgaagtcgactccaaaaccacaaaagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggcttcccggtctttg 301  Q
    ||||||| |||||||||| |||||||||||||||| |||||| |||||||||||||||||||| |||| ||| ||||||||||| |||||||||||||||    
T  30141196 tgattttaaagtcgactctaaaaccacaaaagatggtctttattcgggtcgggaagacataacggaatgtggaaacatcatcacagcttcccggtctttg 30141097  T
Q  302 ctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtc 401  Q
    || | ||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||  ||||||||  ||| ||||||| |||||||||||||||    
T  30141096 cttttgtccaagtttaccaactctagggtggagtttgttaggcgacaagctaatgtggtggatcacactcttgcaaaggaagccacatttctcgctagtc 30140997  T
Q  402 ccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    || |||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  30140996 ccgctatctattttcatatacccaattgtattgaaactttgattattaatgaaatgctata 30140936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 395 - 462
Target Start/End: Complemental strand, 34355809 - 34355742
Alignment:
Q  395 gctagtcccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||||||||| || ||||||||  |||||||||||||||||||||| | ||||  ||||||||||||||    
T  34355809 gctagtcccgctgtttattttgatatacccaattgtattgaaactcttattatcaatgaaatgctata 34355742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 457
Target Start/End: Original strand, 16416676 - 16416738
Alignment:
Q  395 gctagtcccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatg 457  Q
    ||||||| || ||||||||||| ||||||||||||||||||| || | |||| ||||||||||    
T  16416676 gctagtctcattatttattttcatatacccaattgtattgaacctcttattattaatgaaatg 16416738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 462
Target Start/End: Complemental strand, 17752307 - 17752263
Alignment:
Q  418 tatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||||||||||||||||||| ||| |||||  ||||||||||||||    
T  17752307 tatacccaattgtattgaatcttcgattataaatgaaatgctata 17752263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 31029126 - 31029162
Alignment:
Q  318 ccaactctcgggtggagtttgttcggcgacaagctaa 354  Q
    |||||||| |||||||||||||| |||||||||||||    
T  31029126 ccaactctagggtggagtttgttaggcgacaagctaa 31029162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 63 - 462
Target Start/End: Complemental strand, 29755351 - 29754952
Alignment:
Q  63 atttgcatccgtgacgaagatggagtctttgttttggctagaacagtcacctttattggtgtatatccggttgacataggtgaagctttaggcaattacc 162  Q
    |||||||||||||||||||  ||||| ||||| |||||||||||| | | |||||||||||| |||||||||||||| || |||||||| | |  |||||    
T  29755351 atttgcatccgtgacgaagggggagtttttgtgttggctagaacaattagctttattggtgtctatccggttgacattggggaagctttggacctttacc 29755252  T
Q  163 atgcgcttcaatgggcgagtgatatg-acttagataatattgattttgaagtcgactccaaaaccacaaaagatgctctttactcgggtcgggaagacat 261  Q
    ||||||||||||||| ||| |||||| |||| ||||| |||||||||||||||||||| |||||||||||| | | |||||| |||||| ||||||||||    
T  29755251 atgcgcttcaatgggtgagcgatatgcactttgataacattgattttgaagtcgactctaaaaccacaaaaaacggtctttattcgggttgggaagacat 29755152  T
Q  262 aactgaatttggcaacatcatcacggcttcccggtctttgctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtg 361  Q
    ||| |||||||| ||||||||||  ||||||||||| ||||| | ||||||||||||||||||| |||||||||||||| |||||||||||||||| |||    
T  29755151 aacggaatttggaaacatcatcatagcttcccggtccttgcttttgtccaagtttaccaactctagggtggagtttgttaggcgacaagctaatgtggtg 29755052  T
Q  362 gcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctat 461  Q
    || ||||||||  |||  |||||| ||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  29755051 gctcacactcttgcaa-agaagccacatttctcgctagtcccgctatctattttcatatacccaattgtattgaaactttgattattaatgaaatgctat 29754953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 113 - 462
Target Start/End: Complemental strand, 5335557 - 5335207
Alignment:
Q  113 ctttattggtgtatatccggttgacataggtgaagctttaggcaattaccatgcgcttcaatgggcgagtgatatgact-tagataatattgattttgaa 211  Q
    |||||||||||| |||||||||||||| || |||||||| | |  |||||||||||||||||||||||| ||||||  | | ||||| ||| ||||||||    
T  5335557 ctttattggtgtctatccggttgacattggggaagctttggacctttaccatgcgcttcaatgggcgagcgatatgcatcttgataacattaattttgaa 5335458  T
Q  212 gtcgactccaaaaccacaaaagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggcttcccggtctttgctctcgtcca 311  Q
    |||||||| |||||||||||||| | |||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||| | | |||||    
T  5335457 gtcgactctaaaaccacaaaagacggtctttattcgggtcgggaagacataactgaatttggaaacatcatcacagcttcccagtctttgtttttgtcca 5335358  T
Q  312 agtttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactattta 411  Q
    |||||||||||||| |||||||||||||| ||| ||||||||||||  |||| ||||||||  ||| ||||||| ||||||||||||||| | |||| ||    
T  5335357 agtttaccaactctagggtggagtttgttaggcaacaagctaatgtgttggctcacactcttgcaaaggaagccacatttctcgctagtctcgctatcta 5335258  T
Q  412 ttttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||||| || | |||||| ||||||||||||||||| |||||||||| ||||    
T  5335257 ttttcataaatccaattatattgaaactttgattattaatgaaatgatata 5335207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 83 - 462
Target Start/End: Original strand, 26683235 - 26683619
Alignment:
Q  83 tggagtctttgttttggctagaacagtcacctttattggtgtatatccggttgacataggtgaagctttaggcaattaccatgcgcttcaatgggcgagt 182  Q
    ||||||||||||||||||||||||| |||  |||| |||||||||||| ||||||||||| ||||| |  ||   ||||||||| || ||||||| ||||    
T  26683235 tggagtctttgttttggctagaacaatcagttttaatggtgtatatcctgttgacataggggaagcatctggtctttaccatgctctccaatgggtgagt 26683334  T
Q  183 gatatg-acttagataatattgattttgaagtcgactccaaaaccacaaaagatgctctttactcgggtcgggaagacata----actgaatttggcaac 277  Q
    |||||| || | ||||||||  ||||||||||  ||||  |||  ||||||||||||||||||||||||| ||||||||||    |||||| | || |||    
T  26683335 gatatgcaccttgataatatgaattttgaagtttactcttaaattacaaaagatgctctttactcgggtctggaagacatatataactgaagtcggtaac 26683434  T
Q  278 atcatcacggcttcccggtctttgctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaa 377  Q
    || ||||  ||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||| ||||| || |||||  ||     
T  26683435 attatcattgcttccccgtctttgctctcgtccaagttttccaactctcgggtggagtttgttccgcgacaagttaatgtggtggctcatactcttgcag 26683534  T
Q  378 gggaagccgcatttctcgctagtcccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    |||| ||| ||||||| ||||||||| |||||||||||| ||||| || |||||||||||||| ||||||||||||||| |||||    
T  26683535 gggaggccacatttcttgctagtcccgctatttattttcatatactcagttgtattgaaacttcgattactaatgaaattctata 26683619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 272 - 355
Target Start/End: Complemental strand, 22864686 - 22864603
Alignment:
Q  272 ggcaacatcatcacggcttcccggtctttgctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaat 355  Q
    |||||||| ||||| |||||| | |||||||| ||||||||||||||||||||||| ||| |||||||| ||| |||| |||||    
T  22864686 ggcaacattatcactgcttcctgatctttgctttcgtccaagtttaccaactctcgagtgaagtttgttaggcaacaaactaat 22864603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 320 - 462
Target Start/End: Original strand, 22292379 - 22292521
Alignment:
Q  320 aactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcgta 419  Q
    |||||| |||||||||||||| |||||||||| || || || || ||  ||||  ||||||| ||| | | | | ||||||||| |  ||||||||  ||    
T  22292379 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaata 22292478  T
Q  420 tacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    |||||||||||||||||||| | ||||  ||||||||||||||    
T  22292479 tacccaattgtattgaaactcttattataaatgaaatgctata 22292521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 462
Target Start/End: Original strand, 36044911 - 36045059
Alignment:
Q  314 tttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttatt 413  Q
    |||||||||||| | ||| |||||||| |||||||||| ||||  || || || | |||   | | |||||| |||| || ||||||||||| |||||||    
T  36044911 tttaccaactctagagtgaagtttgttaggcgacaagccaatgaggttgctcatattcttgtaggagaagccacattactagctagtcccaccatttatt 36045010  T
Q  414 ttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||| ||| ||| | ||||||||| || | |||| |||||||||||||||    
T  36045011 ttcatatgcccgaatgtattgaatctcttattattaatgaaatgctata 36045059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 462
Target Start/End: Complemental strand, 13948841 - 13948787
Alignment:
Q  408 tttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||||||||| ||||||| ||||||||||||||||||||| || ||| ||||||||    
T  13948841 tttattttcatataccctattgtattgaaactttgattattattgatatgctata 13948787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 462
Target Start/End: Original strand, 18759803 - 18759857
Alignment:
Q  408 tttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||||||||  ||||||||||| |||||||||||| |||| |||||||||||||||    
T  18759803 tttattttgatatacccaattatattgaaacttttattattaatgaaatgctata 18759857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 445
Target Start/End: Original strand, 40299890 - 40300027
Alignment:
Q  308 tccaagtttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccacta 407  Q
    |||||||| | |||||||||||||||||||||| |||||||||| || || || || || |||||   |   || ||| |||||||||||||| ||  |     
T  40299890 tccaagttcaacaactctcgggtggagtttgttaggcgacaagcaaacgtggttgctcatactctcgtagaagaggccacatttctcgctagttccgttg 40299989  T
Q  408 tttattttcgtatacccaattgtattgaaactttgatt 445  Q
    ||||||||| ||||||   ||||||||| |||||||||    
T  40299990 tttattttcatataccactttgtattgagactttgatt 40300027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 462
Target Start/End: Complemental strand, 2157919 - 2157775
Alignment:
Q  318 ccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcg 417  Q
    ||||||||||||||||||||||| |||||||||| || |   | ||  |  ||||  |||| |||||| | || || |||||||||  | ||||||||      
T  2157919 ccaactctcgggtggagtttgttaggcgacaagccaacgagattgcttatgctcttgcaagagaagccacgttactagctagtcccgttgtttattttga 2157820  T
Q  418 tatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
     ||||||||||||||||||||| | ||||  ||||||||||||||    
T  2157819 gatacccaattgtattgaaactattattatcaatgaaatgctata 2157775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 462
Target Start/End: Original strand, 23976596 - 23976671
Alignment:
Q  387 catttctcgctagtcccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||||||||| |||||||  || |||||||  |||||| |  ||||||||||||||||||| |||||| ||||||||    
T  23976596 catttctcgttagtcccgttacttattttattatacctagatgtattgaaactttgattattaatgatatgctata 23976671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 446
Target Start/End: Complemental strand, 22864570 - 22864512
Alignment:
Q  388 atttctcgctagtcccactatttattttcgtatacccaattgtattgaaactttgatta 446  Q
    |||| ||||||||||| |||||| ||||  |||||| |||||||||||||| |||||||    
T  22864570 atttatcgctagtcccgctatttgtttttatatacctaattgtattgaaacgttgatta 22864512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Original strand, 27493351 - 27493392
Alignment:
Q  418 tatacccaattgtattgaaactttgattactaatgaaatgct 459  Q
    ||||||||||||||||||| |||||||||  |||||||||||    
T  27493351 tatacccaattgtattgaatctttgattataaatgaaatgct 27493392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 12 - 462
Target Start/End: Complemental strand, 12371234 - 12370783
Alignment:
Q  12 tgcaacgttgatgcggcgttcttcagtcaacgcaacaaaacaggcgtaggcatttgcatccgtgacgaagatggagtctttgttttggctagaacagtca 111  Q
    |||||| |||| |||||||||| ||||||  | |||| ||| ||| | ||||||||||||||||| |||| ||| ||||||||||||||||||||| |||    
T  12371234 tgcaacattgaggcggcgttctccagtcacagtaacagaaccggcatcggcatttgcatccgtgatgaaggtggggtctttgttttggctagaacaatca 12371135  T
Q  112 cctttattggtgtatatccggttgacataggtgaagctttaggcaattaccatgcgcttcaatgggcgagtgatatg-acttagataatattgattttga 210  Q
      |||| |||||||||||| ||||||||||  ||||| || ||   ||||||||| || |||| || |||||||||| || | |||||||| ||||||||    
T  12371134 gttttaatggtgtatatcctgttgacatagaggaagcattgggtctttaccatgctctccaataggtgagtgatatgcaccttgataatatggattttga 12371035  T
Q  211 agtcgactccaaaaccacaaaagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggcttcccggtctttgctctcgtcc 310  Q
    ||| ||||| ||||  |||||| ||||||||||||||||||||||||||||||||||| | || ||||| ||||| | |||||| |||||| | | ||||    
T  12371034 agttgactctaaaattacaaaaaatgctctttactcgggtcgggaagacataactgaagtcggtaacattatcactgtttcccgatctttgtttttgtcc 12370935  T
Q  311 aagtttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactattt 410  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||||| ||| | || |||||  || |||| ||| ||||||| ||||||||  ||||||    
T  12370934 aagtttgccaactctctggtggagtttattcggcgacaagctaatgtggtgactcatactcttgcaggggaggccacatttcttgctagtcctgctattt 12370835  T
Q  411 attttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    |||||| |||| ||||||||||||||||||||||||||||| ||||||||||    
T  12370834 attttcatatatccaattgtattgaaactttgattactaataaaatgctata 12370783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 446
Target Start/End: Original strand, 12749489 - 12749548
Alignment:
Q  387 catttctcgctagtcccactatttattttcgtatacccaattgtattgaaactttgatta 446  Q
    |||||||||||||||||  ||||||||||| | |||| ||||||||||||||||||||||    
T  12749489 catttctcgctagtcccgttatttattttcatgtacctaattgtattgaaactttgatta 12749548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 462
Target Start/End: Complemental strand, 45680169 - 45680102
Alignment:
Q  395 gctagtcccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    |||||||||  | |||||||||||||||||||||||||||| |||||||||| |||||| | ||||||    
T  45680169 gctagtccctttgtttattttcgtatacccaattgtattgagactttgattattaatgataagctata 45680102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 320 - 462
Target Start/End: Complemental strand, 6006175 - 6006033
Alignment:
Q  320 aactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcgta 419  Q
    |||||| |||||||||||||| |||||||||| || || ||  | ||  ||||  ||||||||||| | | | | ||||||||| |  ||||||||  ||    
T  6006175 aactctagggtggagtttgttaggcgacaagccaacgtggtttctcatgctcttgcaagggaagccacgtctttagctagtcccgccgtttattttaata 6006076  T
Q  420 tacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    |||||||||||||||||||| | ||||  ||||||||||||||    
T  6006075 tacccaattgtattgaaactcttattataaatgaaatgctata 6006033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 396 - 462
Target Start/End: Original strand, 36144802 - 36144868
Alignment:
Q  396 ctagtcccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||||||||||||||||||||| ||||||| ||||||||||| || |  ||| |||||||||||||||    
T  36144802 ctagtcccactatttattttcatatacccgattgtattgaacctcttgttattaatgaaatgctata 36144868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 462
Target Start/End: Original strand, 17790152 - 17790294
Alignment:
Q  320 aactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcgta 419  Q
    |||||| |||||||||||||| |||||||||| || || || || ||| ||||  ||||||| ||| | | | | |||||||   |  ||||||||  ||    
T  17790152 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcacgctcttgcaagggaggccacgtctttagctagtctagccgtttattttaata 17790251  T
Q  420 tacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    |||||||||||||||||||| | ||||  ||||||||||||||    
T  17790252 tacccaattgtattgaaactcttattataaatgaaatgctata 17790294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 462
Target Start/End: Original strand, 19098594 - 19098736
Alignment:
Q  320 aactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcgta 419  Q
    |||||| |||||||||||||| |||||||||| || || || || ||| ||||  ||||||| ||| | | | | |||||||   |  ||||||||  ||    
T  19098594 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcacgctcttgcaagggaggccacgtctttagctagtctagccgtttattttaata 19098693  T
Q  420 tacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    |||||||||||||||||||| | ||||  ||||||||||||||    
T  19098694 tacccaattgtattgaaactcttattataaatgaaatgctata 19098736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 462
Target Start/End: Complemental strand, 35906997 - 35906930
Alignment:
Q  395 gctagtcccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||||||||| || ||||||||   ||||||||||||||||||||| | ||||  ||||||||||||||    
T  35906997 gctagtcccgctgtttattttgagatacccaattgtattgaaactatcattatcaatgaaatgctata 35906930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Original strand, 31935338 - 31935379
Alignment:
Q  418 tatacccaattgtattgaaactttgattactaatgaaatgct 459  Q
    ||||||||||||||||||| ||||||| | ||||||||||||    
T  31935338 tatacccaattgtattgaatctttgatgattaatgaaatgct 31935379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 8566012 - 8566048
Alignment:
Q  318 ccaactctcgggtggagtttgttcggcgacaagctaa 354  Q
    |||||||| |||||||||||||| |||||||||||||    
T  8566012 ccaactctagggtggagtttgttaggcgacaagctaa 8566048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0643 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 158 - 462
Target Start/End: Original strand, 884 - 1190
Alignment:
Q  158 ttaccatgcgcttcaatgggcgagtgatatg-acttagataatattgattttgaagtcgactccaaaaccacaaaagatgctctttactcgggtcgggaa 256  Q
    |||||||||||||||||||||||| |||||| || | |||||||||||||||||||||||||| |||||||||||||| | |||||| ||||||||| ||    
T  884 ttaccatgcgcttcaatgggcgagcgatatgcaccttgataatattgattttgaagtcgactctaaaaccacaaaagacgttctttattcgggtcggaaa 983  T
Q  257 -gacataactgaatttggcaacatcatcacggcttcccggtctttgctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaat 355  Q
     || || || |||||||| ||||||||||| || ||||||||| |||| | ||||||||||||||||||| |||||||||||||| |||||||| |||||    
T  984 agatattaccgaatttggaaacatcatcacagcctcccggtctatgcttttgtccaagtttaccaactctagggtggagtttgttaggcgacaaactaat 1083  T
Q  356 gttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaa 455  Q
    || ||||| |||| |||  ||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||  |||||||| ||||||||    
T  1084 gtggtggctcacaatcttacaagggaagccacatttctcgctagtcccgctatttattttcatatacccaattgtattgaatgtttgattattaatgaaa 1183  T
Q  456 tgctata 462  Q
    |||||||    
T  1184 tgctata 1190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 314 - 456
Target Start/End: Complemental strand, 449 - 307
Alignment:
Q  314 tttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagc-cgcatttctcgctagtcccactatttat 412  Q
    ||||||||||||||||| ||||||| ||| ||| |||||||||| ||||  || ||||| | ||||| ||  | ||||||| |||||| || ||||||||    
T  449 tttaccaactctcgggtagagtttgctcgacgataagctaatgtggtggttcatactct-tgaaggggagatcacatttcttgctagttccgctatttat 351  T
Q  413 tttcgtatacccaattgtattgaaactttgattactaatgaaat 456  Q
    |||| ||||||||||||||||||| |||||||||||||||||||    
T  350 tttcatatacccaattgtattgaagctttgattactaatgaaat 307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 206 - 462
Target Start/End: Complemental strand, 73592 - 73336
Alignment:
Q  206 tttgaagtcgactccaaaaccacaaaagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggcttcccggtctttgctct 305  Q
    |||||||| || ||||||||||| ||||||||  ||||| | ||  ||||||||||  ||||||| || || || ||||||||||| |||  | | ||||    
T  73592 tttgaagttgattccaaaaccacgaaagatgccatttacccaggaagggaagacatctctgaattaggaaatattatcacggcttctcgggttcttctct 73493  T
Q  306 cgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccac 405  Q
    | |||||||| | |||||||||||||||||||| |  | ||||||| ||||| || ||  | || ||  || | ||  || | ||||| |||||||||      
T  73492 cttccaagttcaacaactctcgggtggagtttgctaagagacaagcaaatgtggttgctgatacactcgcaggagagaccacgtttctagctagtcccgt 73393  T
Q  406 tatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    | |||| |||  ||||||||||||||||||||||||||||| |||||| ||| ||||    
T  73392 tgtttacttttatatacccaattgtattgaaactttgattattaatgatatgttata 73336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 314 - 462
Target Start/End: Original strand, 48770106 - 48770254
Alignment:
Q  314 tttaccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttatt 413  Q
    |||||||||||| ||||||||||| |||||||| |||||||||  || || ||   |||  || | |||||| |||| |  ||||||||||| |||||||    
T  48770106 tttaccaactctagggtggagtttattcggcgagaagctaatgaggttgctcatgttctcgcaggagaagccacattacaagctagtcccaccatttatt 48770205  T
Q  414 ttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||| ||||||| | |||||||||||| | |||| |||||||||||||||    
T  48770206 ttcatatacccgaatgtattgaaactcttattattaatgaaatgctata 48770254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 462
Target Start/End: Original strand, 15633227 - 15633371
Alignment:
Q  318 ccaactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcg 417  Q
    ||||||||||||||||||||||| |||||||||| ||||  || || || |||||  |||| |||||| | || || |||||||||  | |||| |||      
T  15633227 ccaactctcgggtggagtttgttaggcgacaagccaatgaggttgctcatactcttgcaagagaagccacgttactagctagtcccgttgtttactttga 15633326  T
Q  418 tatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
     ||||||||||||||||||||| | ||||  ||||||||||||||    
T  15633327 aatacccaattgtattgaaactattattatcaatgaaatgctata 15633371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 462
Target Start/End: Original strand, 32480215 - 32480357
Alignment:
Q  320 aactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcgta 419  Q
    |||||| |||||||||||||| |||||||||| || || || || || |||||  ||||||| ||| | | | | ||||||||| |  ||||||||  ||    
T  32480215 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatactcttgcaagggaggccacgtctttagctagtcccgcagtttattttaata 32480314  T
Q  420 tacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||| |||||||||||||||| | |||| |||||||||||||||    
T  32480315 tactcaattgtattgaaactcttattattaatgaaatgctata 32480357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 462
Target Start/End: Original strand, 3896540 - 3896607
Alignment:
Q  395 gctagtcccactatttattttcgtatacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||||||||| |  ||||||||  ||||||| |||||||||||||| | |||| |||||||||||||||    
T  3896540 gctagtcccgccgtttattttgatatacccgattgtattgaaactcttattattaatgaaatgctata 3896607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 351
Target Start/End: Complemental strand, 33611179 - 33611142
Alignment:
Q  314 tttaccaactctcgggtggagtttgttcggcgacaagc 351  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  33611179 tttaccaactctagggtggagtttgttaggcgacaagc 33611142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 47081794 - 47081758
Alignment:
Q  318 ccaactctcgggtggagtttgttcggcgacaagctaa 354  Q
    |||||||| |||||||||||||| |||||||||||||    
T  47081794 ccaactctagggtggagtttgttaggcgacaagctaa 47081758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 320 - 462
Target Start/End: Complemental strand, 62628 - 62486
Alignment:
Q  320 aactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcgta 419  Q
    |||||| |||||||||||||| |||||||||| || || || || ||  |||| || ||| | ||| | | | | ||||||||| || ||||||||  ||    
T  62628 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcattctctttctaggtaggccacttctttagctagtcccgctgtttattttaata 62529  T
Q  420 tacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||| |||||||||||||||| | |||| |||||||||||||||    
T  62528 tactcaattgtattgaaactcttattattaatgaaatgctata 62486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 462
Target Start/End: Original strand, 14197 - 14339
Alignment:
Q  320 aactctcgggtggagtttgttcggcgacaagctaatgttgtggcccacactctatcaagggaagccgcatttctcgctagtcccactatttattttcgta 419  Q
    ||||||||||||||||||||| |||||||||| ||||| || || |||||| |  | || || ||| ||||  | |||||| ||    |||||| || ||    
T  14197 aactctcgggtggagtttgttaggcgacaagccaatgtggtagctcacactgtccctagagaggccacattattagctagtgccgtagtttattatccta 14296  T
Q  420 tacccaattgtattgaaactttgattactaatgaaatgctata 462  Q
    ||||||||||||||||| ||| ||||   ||||||||||||||    
T  14297 tacccaattgtattgaatcttcgattgtaaatgaaatgctata 14339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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