View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1335_low_11 (Length: 476)
Name: NF1335_low_11
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1335_low_11 |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 83 - 476
Target Start/End: Original strand, 32394612 - 32394992
Alignment:
| Q |
83 |
ataatctaccgtatttattttatttttcaacatcagcaatacaaaaaagtttggtcnnnnnnntttaatatacaaaattcatataaatggatggtaacat |
182 |
Q |
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| T |
32394612 |
ataacctaccgtatttattttatttttcaacatcagcaatacaaaaaagtttggtc-------------aaacaaatttaatataaatggatggtaacat |
32394698 |
T |
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| Q |
183 |
at--gtatagtgttttgcacgcaacgaactccacatttcctttcctttctcaaactctcgaaaaaatctctcaccgccgggatgtcaccaacaccgtctg |
280 |
Q |
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| T |
32394699 |
atatgtatagtgttttgcacgtaacgaactccacatttcctttcctttctcaaactctccaaaaaatctc--accgccgggatgtcaccaacaccgtctg |
32394796 |
T |
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| Q |
281 |
ccggagtccacgtccctctcttgaccggatcaaatccggcggcggttcctggttcaatccccggtgccgtattcaatgtcgccaccagcataattggctc |
380 |
Q |
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| T |
32394797 |
ccggagtccacgttcctctcttgaccggatcaaatccggcggcggttcctggttcaatccccggtgccgtattcaatgtcgccaccagcataattggctc |
32394896 |
T |
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| Q |
381 |
cggaatcatgtcaattccggcgattctcaaagttctcggtgtgcttccttccttcgccttgattcttattgttgccgtgctcgccgaagtttctgt |
476 |
Q |
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| T |
32394897 |
cggaatcatgtcaattccggcgattctcaaagttctcggtgtgcttccttccttcgccttgattcttattgttgccgtgctcgccgaagtttctgt |
32394992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 272 - 473
Target Start/End: Original strand, 32392729 - 32392930
Alignment:
| Q |
272 |
caccgtctgccggagtccacgtccctctcttgaccggatcaaatccggcggcggttcctggttcaatccccggtgccgtattcaatgtcgccaccagcat |
371 |
Q |
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| T |
32392729 |
caccgtctaccggagtccacatccctctattgaccggatcaaaattggcgccggcgcccggtaccatccccggcgccgtgctcaatgtcgccacaagcat |
32392828 |
T |
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| Q |
372 |
aattggctccggaatcatgtcaattccggcgattctcaaagttctcggtgtgcttccttccttcgccttgattcttattgttgccgtgctcgccgaagtt |
471 |
Q |
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| T |
32392829 |
tattggttctggaatcatgtccattccggcaattctaaaagttcttggagtgtttcccgcccttgccttaattctaatcgtggctgtgcttgctgaagtt |
32392928 |
T |
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| Q |
472 |
tc |
473 |
Q |
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| T |
32392929 |
tc |
32392930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 346 - 476
Target Start/End: Original strand, 1971494 - 1971624
Alignment:
| Q |
346 |
gccgtattcaatgtcgccaccagcataattggctccggaatcatgtcaattccggcgattctcaaagttctcggtgtgcttccttccttcgccttgattc |
445 |
Q |
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| T |
1971494 |
gccgtattcaatgtcgcccccagcataatcggctccggaatcatttaaattccggcgattctcaaagttctcggcgtgcttccttctttcgccttgattc |
1971593 |
T |
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| Q |
446 |
ttattgttgccgtgctcgccgaagtttctgt |
476 |
Q |
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| T |
1971594 |
ttatcatcgatgtgctcgctgaagtttctgt |
1971624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 449
Target Start/End: Original strand, 19962540 - 19962578
Alignment:
| Q |
411 |
agttctcggtgtgcttccttccttcgccttgattcttat |
449 |
Q |
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| T |
19962540 |
agttctcggcgtgcttccttctttcgccttgattcttat |
19962578 |
T |
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