View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1335_low_14 (Length: 445)

Name: NF1335_low_14
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1335_low_14
NF1335_low_14
[»] chr2 (6 HSPs)
chr2 (154-445)||(8394409-8394702)
chr2 (258-445)||(8412747-8412934)
chr2 (258-445)||(8434845-8435032)
chr2 (6-99)||(8394273-8394366)
chr2 (277-419)||(8431775-8431914)
chr2 (277-419)||(8406694-8406833)


Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-153; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 154 - 445
Target Start/End: Original strand, 8394409 - 8394702
Alignment:
Q  154 taacattcaaatttcaaacattacaattaaccaaaccttttttatttccccaactatatactaatcctaaacacacacatcataacaataaataccttca 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8394409 taacattcaaatttcaaacattacaattaaccaaaccttttttatttccccaactatatactaatcctaaacacacacatcataacaataaacaccttca 8394508  T
Q  254 aataatat--atatcatgtcttcgatacaaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcc 351  Q
    ||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8394509 aataatatatatatcatgtcttcaatacaaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcc 8394608  T
Q  352 caaaactcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaagaactaaaagtaatcaaacagtacaaaaatactcc 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8394609 caaaactcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaagaactaaaagtaatcaaacagtacaaaaatactcc 8394702  T

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Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 258 - 445
Target Start/End: Complemental strand, 8412934 - 8412747
Alignment:
Q  258 atatatatcatgtcttcgatacaaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcccaaaac 357  Q
    |||||||||||| |||   ||||||||||||||| | |||||||||||||||| || |||||||| | |||||| |||||||||||||||||||||||||    
T  8412934 atatatatcatggctttattacaaacttcagttccaatttcttgttctttatcatcatcttcaaagaaagtaattaatgcttcaatccatctcccaaaac 8412835  T
Q  358 tcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaagaactaaaagtaatcaaacagtacaaaaatactcc 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8412834 tcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaagaactaaaagtaatcaaacagtacaaaaatactcc 8412747  T

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Target: chr2; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 258 - 445
Target Start/End: Complemental strand, 8435032 - 8434845
Alignment:
Q  258 atatatatcatgtcttcgatacaaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcccaaaac 357  Q
    |||||||||||| |||   ||||||||||||||| | |||||||||||||||| || |||||||| | |||||| |||||||||||||||||||||||||    
T  8435032 atatatatcatggctttattacaaacttcagttccaatttcttgttctttatcatcatcttcaaagaaagtaattaatgcttcaatccatctcccaaaac 8434933  T
Q  358 tcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaagaactaaaagtaatcaaacagtacaaaaatactcc 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8434932 tcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaagaactaaaagtaatcaaacagtacaaaaatactcc 8434845  T

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Target: chr2; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 8394273 - 8394366
Alignment:
Q  6 cagagaccttgtcaattatttaatcaaactagtcaaccagaattttcttatctgattttgaccctttccttacccatccctttggttctttgct 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8394273 cagagaccttgtcaattatttaatcaaactagtcaaccagaattttcttatctgattttgaccctttccttacccatccctttggttctttgct 8394366  T

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Target: chr2; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 277 - 419
Target Start/End: Complemental strand, 8431914 - 8431775
Alignment:
Q  277 tacaaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcccaaaactcacaaatatttcattgtc 376  Q
    |||||||||||||||||  ||||||||||||||| ||   |||||| |||||||| |||||| ||||  |||| ||||||||| |||||||||||||| |    
T  8431914 tacaaacttcagttctaacttcttgttctttatcatc---ttcaaagagagtaattaatgctgcaattaatcttccaaaactcccaaatatttcattgcc 8431818  T
Q  377 aaagatacaaactagaaaacaagttgatgatcaagaactaaaa 419  Q
    ||  || ||||| ||||||||||||| |||||||||| |||||    
T  8431817 aactattcaaaccagaaaacaagttgttgatcaagaattaaaa 8431775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 277 - 419
Target Start/End: Complemental strand, 8406833 - 8406694
Alignment:
Q  277 tacaaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcccaaaactcacaaatatttcattgtc 376  Q
    |||||||||||||||||  ||||||||||||||| ||   |||||| |||||||| || ||| ||||  |||| ||||||||| |||||||||||||| |    
T  8406833 tacaaacttcagttctaacttcttgttctttatcatc---ttcaaagagagtaattaacgctgcaattaatcttccaaaactcccaaatatttcattgcc 8406737  T
Q  377 aaagatacaaactagaaaacaagttgatgatcaagaactaaaa 419  Q
    ||  || ||||| ||||||||||||| |||||||||| |||||    
T  8406736 aactattcaaaccagaaaacaagttgttgatcaagaattaaaa 8406694  T

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