View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1335_low_16 (Length: 444)
Name: NF1335_low_16
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1335_low_16 |
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| [»] scaffold0291 (1 HSPs) |
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Alignment Details
Target: scaffold0291 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 11 - 415
Target Start/End: Complemental strand, 4931 - 4527
Alignment:
| Q |
11 |
cacagatgattacaagctaaaagacacaaagccagagctaggagaaaaatggccacatggaggacaacgaggcggaactggttggctatacagcgaaaga |
110 |
Q |
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| T |
4931 |
cacagatgattacaagctaaaagacacaaagccagagctaggagaaaaatggccacatggaggacaacgaggcggaactggttggctatacagcgaaaga |
4832 |
T |
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| Q |
111 |
gcaacgagcacttacgaccttgtggaacagatgttctacctctatgttcgtgttgtcaaagccaaagaattgccaccaaatccagtcacaggaaatgtag |
210 |
Q |
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| T |
4831 |
gcaacgagcacttacgaccttgtggaacagatgttctacctctatgttcgtgttgtcaaagccaaagaattgccaccaaatccagtcacaggaaatgtag |
4732 |
T |
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| Q |
211 |
atccttatgttgaagtgaaagttggcaactacaaaggaaaaacaagacactttgagaagaaaacaaaccccgaatggaagcaagttttcgctttctcgaa |
310 |
Q |
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| T |
4731 |
atccttatgttgaagtgaaagttggcaactacaaaggaaaaacaagacactttgagaagaaaacaaaccccgaatggaagcaagttttcgctttctcgaa |
4632 |
T |
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| Q |
311 |
ggagaagatacaatcatcggttgttgaagtatttgtaagagacaaagagatggtagctagagatgattatattggaaaagttgaatttgatatgcatgaa |
410 |
Q |
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| T |
4631 |
ggagaagatacaatcatcggttgttgaagtatttgtaagagacaaagagatggtagctagagatgattatattggaaaagttgaatttgatatgcatgaa |
4532 |
T |
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| Q |
411 |
gttcc |
415 |
Q |
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| T |
4531 |
gttcc |
4527 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 313
Target Start/End: Complemental strand, 36811702 - 36811602
Alignment:
| Q |
213 |
ccttatgttgaagtgaaagttggcaactacaaaggaaaaacaagacactttgagaagaaaacaaaccccgaatggaagcaagttttcgctttctcgaagg |
312 |
Q |
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|||||||||||||| || |||| ||||||||||||| || || || ||||||||||| || || || |||||||| || ||||||||||| ||||||| |
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| T |
36811702 |
ccttatgttgaagtcaagcttggtaactacaaaggaaccacgaggcattttgagaagaagactaatcctgaatggaatcaggttttcgctttttcgaagg |
36811603 |
T |
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| Q |
313 |
a |
313 |
Q |
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| T |
36811602 |
a |
36811602 |
T |
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