View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1335_low_17 (Length: 421)
Name: NF1335_low_17
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1335_low_17 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 97 - 421
Target Start/End: Complemental strand, 29607246 - 29606910
Alignment:
| Q |
97 |
ctggtgacggtccttcatctgaactcattgtagtattatcatcagccagtggtgctgggggactcctcctaatgattgttgaacttgaacttgtaggctc |
196 |
Q |
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| T |
29607246 |
ctggtgacggtccttcatctgaactcattgtagtattatcatcagccagtggtgctgggggactcctcctaatgattgttgaacttgaacttgtaggctc |
29607147 |
T |
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| Q |
197 |
tggtgctagagctagtgcgtgatgtttcttatgcttactatgcttgtgttttcttctcttgtgcttgtggggtggcggtggttctggcgcatcatcttca |
296 |
Q |
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| T |
29607146 |
tggtgctagagctagtgcgtgatgtttcttatgcttactatgcttgtgttttcttctcttgtgcttgtggggtggcggtggttctggcgcatcatcttca |
29607047 |
T |
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| Q |
297 |
ggcgatggtgct------------ggtgtgtctattgcaggtgttggtgcaggtgatggtgggagaattgctggggaaggaacaggtgatgattttggtg |
384 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29607046 |
ggcgatggtgctggtgctgatgatggtgtgtctattgcaggtgttggtgcaggtgatggtgggagaattgctggggaaggaacaggtgatgattttggtg |
29606947 |
T |
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| Q |
385 |
ctttcttctttttgtgtgtaagtgctggtgccggtgt |
421 |
Q |
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| T |
29606946 |
ctttcttctttttgtgtgtaggtgctggtgccggtgt |
29606910 |
T |
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