View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1335_low_18 (Length: 404)
Name: NF1335_low_18
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1335_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 7954948 - 7954575
Alignment:
| Q |
1 |
tttattgagtcacccattcacgggcaacaacaaaataatagagtgatactagtgacacaaatgtgcaaacaatagaacaatacaatattattatttttga |
100 |
Q |
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| T |
7954948 |
tttattgagtcacccattcacgggcaacaacaaaataatagagtgatactagtgacacaaatgtgcaaacaatagaacaatacaatattattatttttgt |
7954849 |
T |
|
| Q |
101 |
aaaatattacatcaattgggaaggtttattgagaacaagacaacaaggacaactaacaatataattgatgtggtacaacatgtgaaactattaagaaaaa |
200 |
Q |
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| T |
7954848 |
aaaatattacatcaattgg-aaggtttattgagaacaagacaacaaggacaactaacaatataattgatgtggtacaacatgtgaaactattaagaaaaa |
7954750 |
T |
|
| Q |
201 |
ataatctttgtcttatttaacatttccgggatgacaaacttagacaaattgattcaaatattcatcagcagtggtgtatgtgacatcaggataggcttca |
300 |
Q |
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| T |
7954749 |
ataatctttgtcttatttaacatttccgggatgacaaacttagacaaattgattcaaatattcatcagcagtggtgtatgtgacatcaggataggcttca |
7954650 |
T |
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| Q |
301 |
gaagcttcaatatctttggttggatcaatctcataaactgcatctccttttatttgttgtgaatgatacaatgcc |
375 |
Q |
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| T |
7954649 |
gaagcttcaatatctttggttggatcaatctcataaactgcatctccttttatttgttgtgaatgatacaatgcc |
7954575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 181 - 375
Target Start/End: Complemental strand, 7967759 - 7967565
Alignment:
| Q |
181 |
tgtgaaactattaagaaaaaataatctttgtcttatttaacatttccgggatgacaaacttagacaaattgattcaaatattcatcagcagtggtgtatg |
280 |
Q |
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| T |
7967759 |
tgtgaaactattaaaaagaaatcatctttgtctttttgaacattcccaggaagacaaacttagacaaattgattcaaatattcatcagcagtggtgtatg |
7967660 |
T |
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| Q |
281 |
tgacatcaggataggcttcagaagcttcaatatctttggttggatcaatctcataaactgcatctccttttatttgttgtgaatgatacaatgcc |
375 |
Q |
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| T |
7967659 |
tgacatcaggataggcttcagaagcttcaatatctttggttggatcaatctcataaactgcatctccttttatttgttgtgaatgatacaatgcc |
7967565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 7960780 - 7960738
Alignment:
| Q |
5 |
ttgagtcacccattcacgggcaacaacaaaataatagagtgat |
47 |
Q |
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| T |
7960780 |
ttgagtcacccattcacgggcaacaataaaataatagagtgat |
7960738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 7960698 - 7960640
Alignment:
| Q |
59 |
aaatgtgcaaacaatagaacaa--tacaatattattatttttgaaaaatattacatcaa |
115 |
Q |
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| T |
7960698 |
aaatgtgcaaacaatagaacaaaatacaatattgttatttttctaaaatattacatcaa |
7960640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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