View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1335_low_2 (Length: 718)
Name: NF1335_low_2
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1335_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 598; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 66 - 710
Target Start/End: Complemental strand, 43297822 - 43297171
Alignment:
| Q |
66 |
agcagagagtgctgagaatggtatcggtattgtgaagctaatgggacgttgcagtggtaagcttcactcattcttacagtaatgtacaaccttagcctaa |
165 |
Q |
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| T |
43297822 |
agcagagagtgctgagaatggtatcggtgttgtgaagctaatgggacgttgcagtggtaagcttcactcattcttacagtaatgtacaaccttagcctaa |
43297723 |
T |
|
| Q |
166 |
tggtatagacagtgttgaaatttatgtgtaagtggttagtttcaca-------ttgattaggaatgaactaaatcaattatatgtaagagtattaaccca |
258 |
Q |
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| T |
43297722 |
tggtatagacagtgttgaaatttatgtgtaagtggttagtttcacaattcacattgattacgaatgaactaaatcaattatatgtaagagtattaaccca |
43297623 |
T |
|
| Q |
259 |
gtttaatatgattcaatgagagtgaagtataactgaaatcaaaccaaccgacaaagtagtgtcgatttctagttcaacttgttgaaccaacccgatcagc |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43297622 |
gtttaatatgattcaatgagagtgaagtataactgaaatcaaaccaaccgacaaagtagtgtcgatttctagttcaacttgttgaaccaacccgatcagc |
43297523 |
T |
|
| Q |
359 |
cagattttgcaaacgcttcttggcagttgctagttcgaccaagtttttaaaacactcagtggcactaatgattagttgttatcgtgacatatctgtgcag |
458 |
Q |
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| T |
43297522 |
cagattttgcaaacgcttcttggcagttgctagttcgaccaggtttttaaaacactcagtggcactaatgattagttgtcatcgtgacatatctgtgcag |
43297423 |
T |
|
| Q |
459 |
gatttatagccatgtatgcaactcttgcgagccgagatgtggactgttgtttgattcccgagtcacccttttacctcgagggacctggtggacttctgga |
558 |
Q |
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| T |
43297422 |
gatttatagccatgtatgcaactcttgcgagccgagatgtggactgttgtttgattcctgagtcacccttttacctcgagggacctggtggacttctgga |
43297323 |
T |
|
| Q |
559 |
gttcatcgagaaaagactgagagaacaaggacacatggttatagtaatagctgaaggtgcaggtcaggagctaattcctcgtaatgacacatctaataag |
658 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43297322 |
gttcattgagaaaagactgagagaacaaggacacatggttatagtaatagctgaaggtgcaggtcaggagctaattcctcgtaatgacacatctaataag |
43297223 |
T |
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| Q |
659 |
aataagcccgatgcttcttctgatgacttggttcaggatgtcggtctgtggt |
710 |
Q |
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| T |
43297222 |
aataagcccgatgcttctcctgatgacttggttcaggatgtcggtctgtggt |
43297171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 447 - 710
Target Start/End: Complemental strand, 43281320 - 43281053
Alignment:
| Q |
447 |
atatctgtgcaggatttatagccatgtatgcaactcttgcgagccgagatgtggactgttgtttgattcccgagtcacccttttacctcgagggacctgg |
546 |
Q |
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| T |
43281320 |
atatttgtgcaggatttatagccatgtatgcaactcttgtcagccgagatgtggattgctgtttgattccagagtcaccattttaccttgaaggaccagg |
43281221 |
T |
|
| Q |
547 |
tggacttctggag----ttcatcgagaaaagactgagagaacaaggacacatggttatagtaatagctgaaggtgcaggtcaggagctaattcctcgtaa |
642 |
Q |
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||| || | ||| ||||| |||||||| ||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43281220 |
tgggctattagaggtcattcattcagaaaagattgaaaaaacaaggacatatggttatagtaatagctgaaggtgcaggtcaggagctaattccttctaa |
43281121 |
T |
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| Q |
643 |
tgacacatctaataagaataagcccgatgcttcttctgatgacttggttcaggatgtcggtctgtggt |
710 |
Q |
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||||||||||| |||||||||||| |||||||| || | |||||| |||| ||||| | |||||||| |
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| T |
43281120 |
tgacacatctattaagaataagccagatgcttcatcgaacgacttgtttcaagatgttgatctgtggt |
43281053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 455 - 553
Target Start/End: Original strand, 34227452 - 34227550
Alignment:
| Q |
455 |
gcaggatttatagccatgtatgcaactcttgcgagccgagatgtggactgttgtttgattcccgagtcacccttttacctcgagggacctggtggactt |
553 |
Q |
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||||||||||| || |||||||| |||||||| || ||||||| |||||||| |||||||| ||||| || ||||||||||| || |||||||||||| |
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| T |
34227452 |
gcaggatttattgcaatgtatgctactcttgcaagtagagatgttgactgttgcttgattccggagtcgccgttttacctcgaaggtcctggtggactt |
34227550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 453 - 530
Target Start/End: Complemental strand, 42978488 - 42978411
Alignment:
| Q |
453 |
gtgcaggatttatagccatgtatgcaactcttgcgagccgagatgtggactgttgtttgattcccgagtcaccctttt |
530 |
Q |
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| T |
42978488 |
gtgcaggatttattgcaatgtatgccacccttgcgaatcgggatgtggactgttgcttgattccggagacaccctttt |
42978411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 454 - 534
Target Start/End: Original strand, 51585222 - 51585302
Alignment:
| Q |
454 |
tgcaggatttatagccatgtatgcaactcttgcgagccgagatgtggactgttgtttgattcccgagtcacccttttacct |
534 |
Q |
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|||||| ||||| || ||| |||| || ||||| || |||||||||||||||| |||||||| ||||||||||| ||||| |
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| T |
51585222 |
tgcaggttttattgcgatgcatgctacacttgctagtagagatgtggactgttgcttgattccagagtcacccttctacct |
51585302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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