View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1335_low_26 (Length: 332)
Name: NF1335_low_26
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1335_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 2 - 320
Target Start/End: Complemental strand, 7540296 - 7539978
Alignment:
| Q |
2 |
gctttgatagtaggcactcagacttgtgaatgagtcttatgactttaagttcacgaggagaattcaactcaaaagactagtttgttaggtggtatctctt |
101 |
Q |
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| T |
7540296 |
gctttgatagtaggcactcagacttgtgaatgagtcttatgactttaagttcacgaggagaattcaactcaaaagactagtttgttaggtggtatctctt |
7540197 |
T |
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| Q |
102 |
tcatctttgacggcatcattaacctaacatgtgcattacttaaatccggtctataaatagttttttatgtgggccaacttagaacgaaagcatcaattgt |
201 |
Q |
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| T |
7540196 |
tcatctttgacggcatcattaacctaacatgtgcattacttaaatccggtctataaatagttttttatgtgggccaacttagaacgaaagcatcaattgt |
7540097 |
T |
|
| Q |
202 |
tatgatttaatactatgaggaaatcccacccataaaactaacctactagttgggagagtctcgtgactcaagtactatattgaacatttatatataatca |
301 |
Q |
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| T |
7540096 |
tatgatttaatactatgaggaaatcccacccataaaactaacctactagttgggagagtctcgtgactcaagtactatattgaacatttatatataatca |
7539997 |
T |
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| Q |
302 |
atgtgagactctgaagaat |
320 |
Q |
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| T |
7539996 |
atgtgagactctgaagaat |
7539978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 98 - 199
Target Start/End: Complemental strand, 7453002 - 7452901
Alignment:
| Q |
98 |
tctttcatctttgacggcatcattaacctaacatgtgcattacttaaatccggtctataaatagttttttatgtgggccaacttagaacgaaagcatcaa |
197 |
Q |
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| T |
7453002 |
tctttaatctttgatggcttcattaacctaagaggttgattactttaatccggcctataaatagtcttttatgtggtccaactttggagaaaagcatcaa |
7452903 |
T |
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| Q |
198 |
tt |
199 |
Q |
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|| |
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| T |
7452902 |
tt |
7452901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 33447752 - 33447715
Alignment:
| Q |
46 |
ttaagttcacgaggagaattcaactcaaaagactagtt |
83 |
Q |
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| T |
33447752 |
ttaagttcacgaggagagttcaacccaaaagactagtt |
33447715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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