View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1335_low_28 (Length: 330)
Name: NF1335_low_28
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1335_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 30 - 320
Target Start/End: Original strand, 3132695 - 3132990
Alignment:
| Q |
30 |
aatacactaattgggaattggcttacaagataagatgggaagagatgcaggtatcggcagctttggttgtggtgggtgtagatagagataactagtggtt |
129 |
Q |
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| T |
3132695 |
aatacactaattgggaattggcttacaagataagatgggaagagatgcaggtatcggcagctttggttgtggtgggtgtagatagagataactggtggtt |
3132794 |
T |
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| Q |
130 |
gaatcctgttaaaggaaaatcataaaatacataaaagcaatcgaactgaatattctctcaatcttgttttatttgtgattacttttgtttgaagaatatg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
3132795 |
gaatcctgttaaaggaaaatcataaaatacataaaagcaatcgaactgaatattctctcaatcttgttttgtctgtgattacttttgtttgaagaatatg |
3132894 |
T |
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| Q |
230 |
tgttgcgttgaaaac------gcattttatccaaaaatttcgaatnnnnnnnttcccaagtactatgtacaattgatctacatgtataacagtataa |
320 |
Q |
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| T |
3132895 |
tgttgcgttgaaaacaaggaagcattttatccaaaaatttcgaat-aaaaaattcccaagtactatgtacaattgatctacatgtataacagtataa |
3132990 |
T |
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