View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1335_low_3 (Length: 594)
Name: NF1335_low_3
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1335_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 30 - 585
Target Start/End: Original strand, 36970334 - 36970892
Alignment:
| Q |
30 |
tacaggatgtatgttttatccttttggtttaagataattatgtttccattattattgtttagtgtttgttcattttaattgaagtataatttgtatagac |
129 |
Q |
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| T |
36970334 |
tacaggatgtatgttt-atccttttggtttaagataattatgtttccattattattgtttagtgtttgttcattttaattgaagtataatttgtatagac |
36970432 |
T |
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| Q |
130 |
taaaatttcttgaacaccaagataaaactgatataaagtctttttagttatatttcttaatggtaaatctgtgttaaaaaacaaaagaatacaccgatga |
229 |
Q |
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| T |
36970433 |
taaaattccttgaacaccaagataaaactgatataaagtctttttagttatatttcttaatggtaaatctgtgttaaaaaacaaaagaatacaccgatga |
36970532 |
T |
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| Q |
230 |
taatggataactcttttacgtaaacataatatgatttagactaaaattaaaacttaatgatatcacaaaggattcaaataatt----ggacatgttgctt |
325 |
Q |
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| T |
36970533 |
taatggaaaactcctttacgtaaacataatatgatttagactaaaatttaaacttaatgatattacaaaggattcaaataattaatgggacatgttggtt |
36970632 |
T |
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| Q |
326 |
atgtttgttttgcaaagtatatcaattttgacattcattcccaaactcatttgatggattgttttacaaataagctgctgatagaattatattactttga |
425 |
Q |
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| T |
36970633 |
atgtttgttttgcaaagtatatcaattttgacattcattcccaaactcatttgatggattgttttacaaataagctgctaatagaattatattactttga |
36970732 |
T |
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| Q |
426 |
acttatgaaatggaatggatagaagttgctatattaattcaaatcaaataaatcgttattttaatatttgctcagcttaaatctttatcatacctttgtg |
525 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36970733 |
acttatgaaatggaatggatagaagttgctatattaattctaatcaaataaatcgttattttaatatttgctcagcttaaatctttatcatacctttatg |
36970832 |
T |
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| Q |
526 |
aagtaaatatcatcttacatccctctaccttttaatgttgtaaagtccaactagaataat |
585 |
Q |
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| T |
36970833 |
aagtaaatatcatcttacattcctctaccttttaatgttggaaagtccaactaaaataat |
36970892 |
T |
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