View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1335_low_32 (Length: 325)
Name: NF1335_low_32
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1335_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 4 - 244
Target Start/End: Complemental strand, 18306702 - 18306460
Alignment:
| Q |
4 |
agcaaatgttttttgagaagtttatgcgtaagaattcattttgtcacttttagtaaaattcttgaagacatttttaaataaatattttcctttaaaatcc |
103 |
Q |
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| T |
18306702 |
agcaagtgtattttgagaagtttatgagtaagaattcattttgtcacttttagtaaaattcttgaagacatttttaaacaaatattgtcctttaaaatcc |
18306603 |
T |
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| Q |
104 |
taattgaatacaccaagcatttggctcct--tattaattccaagcacaaggttattttgctatatggtgcaacacaattgacacacgatgaaaagaaaat |
201 |
Q |
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| T |
18306602 |
taattgaatacaccaaacatttggctccttctattaattccaagcacgaggttattttgttatatggtgcaacacaattgacacacgatgaaaagaaaat |
18306503 |
T |
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| Q |
202 |
caaagaaaactctttaactccactaagtatggattgttggtgt |
244 |
Q |
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| T |
18306502 |
taaagaaaactctttaactccactaagtatggattgttggtgt |
18306460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 7052411 - 7052469
Alignment:
| Q |
57 |
taaaattcttgaagacatttttaaataaatattttcctttaaaatcctaattgaatacac |
116 |
Q |
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| T |
7052411 |
taaaattctt-aagacttttttaaacaaaaattgtcctttaaaatcctaattcaatacac |
7052469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 3608071 - 3608120
Alignment:
| Q |
68 |
aagacatttttaaataaatattttcctttaaaatcctaattgaatacacc |
117 |
Q |
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| T |
3608071 |
aagacttttttaaacaaaaattatcctttaaaatcctaattcaatacacc |
3608120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 46601458 - 46601408
Alignment:
| Q |
63 |
tcttgaagacatttttaaataaatattttcctttaaaatcctaattgaata |
113 |
Q |
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| T |
46601458 |
tcttcaagacttttttaaataaaaattgtcttttaaaatcctaattgaata |
46601408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 728032 - 728081
Alignment:
| Q |
68 |
aagacatttttaaataaatattttcctttaaaatcctaattgaatacacc |
117 |
Q |
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| T |
728032 |
aagacttttttaaacaaaaattctcctttaaaatcctaattcaatacacc |
728081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 39218933 - 39218884
Alignment:
| Q |
68 |
aagacatttttaaataaatattttcctttaaaatcctaattgaatacacc |
117 |
Q |
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| T |
39218933 |
aagacttttttaaacaaaaattgtcctttaaaatcctaattcaatacacc |
39218884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 33807214 - 33807165
Alignment:
| Q |
68 |
aagacatttttaaataaatattttcctttaaaatcctaattgaatacacc |
117 |
Q |
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| T |
33807214 |
aagacttttttaaataaaaattgtcctttaaaatcctaatccaatacacc |
33807165 |
T |
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