View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1335_low_33 (Length: 316)

Name: NF1335_low_33
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1335_low_33
NF1335_low_33
[»] chr8 (2 HSPs)
chr8 (30-305)||(32423124-32423399)
chr8 (73-143)||(37659348-37659418)
[»] chr7 (1 HSPs)
chr7 (71-142)||(38235986-38236057)
[»] chr1 (6 HSPs)
chr1 (71-138)||(47905511-47905578)
chr1 (71-143)||(2925752-2925824)
chr1 (107-151)||(36887099-36887143)
chr1 (71-142)||(42488445-42488515)
chr1 (107-149)||(8156150-8156192)
chr1 (71-153)||(45565321-45565405)
[»] chr3 (2 HSPs)
chr3 (71-140)||(39499392-39499461)
chr3 (71-142)||(43007344-43007413)
[»] chr5 (1 HSPs)
chr5 (71-142)||(1658369-1658441)
[»] chr4 (2 HSPs)
chr4 (71-136)||(32948348-32948415)
chr4 (82-153)||(8828016-8828088)
[»] chr2 (3 HSPs)
chr2 (71-146)||(1726090-1726165)
chr2 (107-149)||(36870126-36870168)
chr2 (71-140)||(40357650-40357720)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 30 - 305
Target Start/End: Original strand, 32423124 - 32423399
Alignment:
Q  30 tatatgaattgttctttcgaaaaatatgaaagannnnnnnnccattttcctatatattttcaaccccaaaactctttcttccctttccctacaaactctc 129  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32423124 tatatgaattgttctttcgaaaaatatgaaagattttttttccattttcctatatattttcaaccccaaaactctttcttccccttccctacaaactctc 32423223  T
Q  130 aaacaaagccttagtgtttgtttgtttttgtcgtggattaacgtctaatgcacattaagatcaaagttatagtttatagcttgttaaactgtggatgatt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  32423224 aaacaaagccttagtgtttgtttgtttttgtcgtggattaacgtctaatgcacgttaagatcaaagttatagtttatagcttgttaaattgtggatgatt 32423323  T
Q  230 agcgtgtggaggtgagttgtgtgtgtctagaagcgaaaccaaacatttagttaaagtaatcatatatataagtatt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32423324 agcgtgtggaggtgagttgtgtgtgtctagaagcgaaaccaaacatttagttaaagtaatcatatatataagtatt 32423399  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 37659418 - 37659348
Alignment:
Q  73 attttcctatatattttcaaccccaaaactctttcttccctttccctacaaactctcaaacaaagccttag 143  Q
    ||||| |||||||||| |||||||||| | ||  | |||||| |||| |||| ||||||||||||||||||    
T  37659418 atttttctatatatttccaaccccaaagccctcccctcccttcccctccaaattctcaaacaaagccttag 37659348  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 38235986 - 38236057
Alignment:
Q  71 ccattttcctatatattttcaaccccaaaactctttcttccctttccctacaaactctcaaacaaagcctta 142  Q
    ||||||| |||||||||| || ||||||||||||  | |||||| |||| ||||||| ||||||||||||||    
T  38235986 ccatttttctatatatttccagccccaaaactctcccctcccttcccctccaaactcccaaacaaagcctta 38236057  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 47905578 - 47905511
Alignment:
Q  71 ccattttcctatatattttcaaccccaaaactctttcttccctttccctacaaactctcaaacaaagc 138  Q
    ||||||| |||||||||| |||||||||| | ||  |||||||| |||| ||||||||||||||||||    
T  47905578 ccatttttctatatatttccaaccccaaacccctcccttcccttccccttcaaactctcaaacaaagc 47905511  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 2925824 - 2925752
Alignment:
Q  71 ccattttcctatatattttcaaccccaaaactctttcttccctttccctacaaactctcaaacaaagccttag 143  Q
    ||||||| |||||||||| ||||| |||| ||||  | |||||| |||| ||||||| |||||||||||||||    
T  2925824 ccatttttctatatatttccaacctcaaagctctcccctcccttccccttcaaactcccaaacaaagccttag 2925752  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 36887099 - 36887143
Alignment:
Q  107 cttccctttccctacaaactctcaaacaaagccttagtgtttgtt 151  Q
    |||||| |||||| ||||||| |||||||||||||||||||||||    
T  36887099 cttccccttccctccaaactcgcaaacaaagccttagtgtttgtt 36887143  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 42488515 - 42488445
Alignment:
Q  71 ccattttcctatatattttcaaccccaaaactctttcttccctttccctacaaactctcaaacaaagcctta 142  Q
    ||||||| |||||||||| |||||||||| | || || |||||| |||| ||||||||| ||||||||||||    
T  42488515 ccatttttctatatatttccaaccccaaagccctctcatccctt-ccctccaaactctcgaacaaagcctta 42488445  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 8156192 - 8156150
Alignment:
Q  107 cttccctttccctacaaactctcaaacaaagccttagtgtttg 149  Q
    |||||||| || | |||||||||||||||||||||||||||||    
T  8156192 cttcccttcccttccaaactctcaaacaaagccttagtgtttg 8156150  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 45565321 - 45565405
Alignment:
Q  71 ccattttcctatatattttcaacccc--aaaactctttcttccctttccctacaaactctcaaacaaagccttagtgtttgtttg 153  Q
    ||||||| |||||||||| |||||||  ||||| ||  | |||||| |||| ||||||| ||||||||||||||| || ||||||    
T  45565321 ccatttttctatatatttccaacccctcaaaaccctcccctcccttcccctccaaactcgcaaacaaagccttagggtgtgtttg 45565405  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 39499392 - 39499461
Alignment:
Q  71 ccattttcctatatattttcaaccccaaaactctttcttccctttccctacaaactctcaaacaaagcct 140  Q
    ||||||| ||||||||||||||||||||| | ||  | |||||| |||| ||||||| ||||||||||||    
T  39499392 ccatttttctatatattttcaaccccaaagccctcccctcccttcccctccaaactcccaaacaaagcct 39499461  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 43007413 - 43007344
Alignment:
Q  71 ccattttcctatatattttcaaccccaaaactctttcttccctttccctacaaactctcaaacaaagcctta 142  Q
    ||||||| |||||||||| |||||| ||||| ||  |  ||||| |||| ||||||||||||||||||||||    
T  43007413 ccatttttctatatatttccaacccgaaaaccctccc--cccttcccctccaaactctcaaacaaagcctta 43007344  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 1658369 - 1658441
Alignment:
Q  71 ccattttcctatatattttcaacccc-aaaactctttcttccctttccctacaaactctcaaacaaagcctta 142  Q
    ||||||| |||||||||| ||||||| ||||| ||  | |||||| |||| ||||||||||||||||||||||    
T  1658369 ccatttttctatatatttccaacccccaaaaccctcccctcccttccccttcaaactctcaaacaaagcctta 1658441  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 32948415 - 32948348
Alignment:
Q  71 ccattttcctatatattttcaacccc--aaaactctttcttccctttccctacaaactctcaaacaaa 136  Q
    ||||||| ||||||||||||||||||  |||||||| || |||||| |||| ||||| ||||||||||    
T  32948415 ccatttttctatatattttcaaccccccaaaactctctcctcccttcccctccaaacactcaaacaaa 32948348  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 8828088 - 8828016
Alignment:
Q  82 tatattttcaaccccaaaa-ctctttcttccctttccctacaaactctcaaacaaagccttagtgtttgtttg 153  Q
    ||||||||| ||||||||| | || ||||||| | ||||| |||||||||||||||| |||||  ||||||||    
T  8828088 tatattttccaccccaaaaaccctctcttcccctcccctataaactctcaaacaaagtcttagactttgtttg 8828016  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 1726090 - 1726165
Alignment:
Q  71 ccattttcctatatattttcaaccccaaaactctttcttccctttccctacaaactctcaaacaaagccttagtgt 146  Q
    ||||||| |||||||||| ||||||| || | ||  | ||||||  ||| ||||||||||||||||||||||||||    
T  1726090 ccatttttctatatatttccaacccccaagccctcccctcccttctcctccaaactctcaaacaaagccttagtgt 1726165  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 36870168 - 36870126
Alignment:
Q  107 cttccctttccctacaaactctcaaacaaagccttagtgtttg 149  Q
    |||||||| |||| ||||||| |||||||||||||||||||||    
T  36870168 cttcccttccccttcaaactcgcaaacaaagccttagtgtttg 36870126  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 40357650 - 40357720
Alignment:
Q  71 ccattttcctatatattttcaa-ccccaaaactctttcttccctttccctacaaactctcaaacaaagcct 140  Q
    ||||||| |||||||||||||| ||||||||||||  | |||||| |||| ||||||  ||||||||||||    
T  40357650 ccatttttctatatattttcaacccccaaaactctcccctcccttcccctccaaacttccaaacaaagcct 40357720  T

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