View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1335_low_40 (Length: 270)
Name: NF1335_low_40
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1335_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 30315372 - 30315146
Alignment:
| Q |
30 |
ttatcaaatggcttcttctagcatgtttctaattggtcttgtgcttttattgacaccaatgttgcttgaagcaaaggagtttcatgttggtggcaaagat |
129 |
Q |
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| T |
30315372 |
ttatcaaatggcttcttctagcatgtttctaattggtcttgtgcttttattgacaccaatgttgcttgaagcaaaggagtttcatgttggtggcaaagat |
30315273 |
T |
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| Q |
130 |
ggttgggtcgtgaatccttctgaagactacaatcagtgggctcgaacacatagatttcgagtcaatgacactctccgtgagtccaatattcattgttaat |
229 |
Q |
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| T |
30315272 |
ggttgggtcgtgaatccttctgaagactacaatcagtgggctcgaacacataggtttcgagtcaatgacactctccgtgagtcca--attcattgttaat |
30315175 |
T |
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| Q |
230 |
ccccaacattacaatcattttacgagtat |
258 |
Q |
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| T |
30315174 |
cctcaacattacaatcattttacgagtat |
30315146 |
T |
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