View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1335_low_41 (Length: 267)
Name: NF1335_low_41
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1335_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 26 - 229
Target Start/End: Complemental strand, 31351399 - 31351196
Alignment:
| Q |
26 |
gattattctaaagtattctcaccagtttcaaggcatgaaactatcagattagtcattgcagttgcatgtagaaaatcttggcctctatatcatttagata |
125 |
Q |
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| T |
31351399 |
gattactctaaagtattctcaccagtttgaaggcatgaaactatcagattagtcattgcagttgcatgtagaaaagcttggcccctataccatttagatg |
31351300 |
T |
|
| Q |
126 |
tcaaatcaacctttctaaatggtcccttagaggaaattgggtttgttacacaactgtctgacttttttataaaacggaaagaagattgagaatataggtt |
225 |
Q |
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| T |
31351299 |
ccaaatcaacctttttaaatggtcccttagaggaaattgggtctgttacacaaccgtctgacttttttataaaacggaaagaagatagagaatataggtt |
31351200 |
T |
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| Q |
226 |
gcat |
229 |
Q |
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|||| |
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| T |
31351199 |
gcat |
31351196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 149
Target Start/End: Original strand, 25431669 - 25431769
Alignment:
| Q |
49 |
agtttcaaggcatgaaactatcagattagtcattgcagttgcatgtagaaaatcttggcctctatatcatttagatatcaaatcaacctttctaaatggt |
148 |
Q |
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| T |
25431669 |
agttgcaagtcatgaaactatcaggctagtcattgtagtagcaactagcaaatcctagcctttgtatcatttagatgtgaaatcaacttttctaaacggt |
25431768 |
T |
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| Q |
149 |
c |
149 |
Q |
| |
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| |
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| T |
25431769 |
c |
25431769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 33684545 - 33684584
Alignment:
| Q |
36 |
aagtattctcaccagtttcaaggcatgaaactatcagatt |
75 |
Q |
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|||| |||||||||||| |||||||||||||||||||||| |
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| T |
33684545 |
aagttttctcaccagttgcaaggcatgaaactatcagatt |
33684584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 33701599 - 33701638
Alignment:
| Q |
36 |
aagtattctcaccagtttcaaggcatgaaactatcagatt |
75 |
Q |
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|||| |||||||||||| |||||||||||||||||||||| |
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| T |
33701599 |
aagttttctcaccagttgcaaggcatgaaactatcagatt |
33701638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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