View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1335_low_42 (Length: 264)
Name: NF1335_low_42
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1335_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 30245041 - 30245275
Alignment:
| Q |
1 |
tcttagtactgattttagttgatcctttaggagaaatttagttgagaattatctttctatggtttaagtcagaattttgttaagaatttcatagtactga |
100 |
Q |
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| T |
30245041 |
tcttagtactgattttagttgatcctttaggagaaatttagttgagaattatctttctatggtttaagtcagaattttgttaagaatttcgtagtactga |
30245140 |
T |
|
| Q |
101 |
aattttgttggtacgttatttgcagatttttaaggaatattgacgggtgtagatgcatgcaccaaactctttgaccaacctgtgaaggattaaacttttt |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30245141 |
aattttgctggtacgttatttgcagatttttaaggaatattgacgggtgtcgatgcatgcaccaaactctttggccaacctgtgaaggattaaacttttt |
30245240 |
T |
|
| Q |
201 |
cttggttgcatatttgatctctaggtatttcttaa |
235 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
30245241 |
cttggttgcatatttgatctctaggtatttcttaa |
30245275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 6 - 187
Target Start/End: Original strand, 30679570 - 30679751
Alignment:
| Q |
6 |
gtactgattttagttgatcctttaggagaaatttagttgagaatt-atctttctatgg-tttaagtcagaattttgttaagaatttcatagtactgaaat |
103 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||| ||||||| |||| |
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| T |
30679570 |
gtactgattttaggtgatcctttaggacaaatttagttgagaatttatctttctatggctttgagtcagaattttgttaagaatttcgtagtactaaaat |
30679669 |
T |
|
| Q |
104 |
tttgttggtacgttatttgcagatttttaaggaatattgacgggtgtagatgcatgcaccaaactctttgaccaacctgtgaag |
187 |
Q |
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| T |
30679670 |
cgtcttggtacgttatttgcagatttttaaagaatattgacggttgtcgatgcatgcactaaactc--tgaccaacctgtgaag |
30679751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 6 - 170
Target Start/End: Complemental strand, 30057670 - 30057504
Alignment:
| Q |
6 |
gtactgattttagttgatcctttaggagaaatttagttgagaatt-atctttctatgg-tttaagtcagaattttgttaagaatttcatagtactgaaat |
103 |
Q |
| |
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|||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||||| ||| ||||||||||||||| |||||||||||||||| |||| |
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| T |
30057670 |
gtacagattttaggtgatcctttaggacaaatttagttgagaatttatctttctatggctttgagtcagaattttgttcagaatttcatagtactaaaat |
30057571 |
T |
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| Q |
104 |
tttgttggtacgttatttgcagatttttaaggaatattgacgggtgtagatgcatgcaccaaactct |
170 |
Q |
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| T |
30057570 |
tgtcttggtatgttatttgctaatttttaaagaatattgatggctgttgatgcatgcactaaactct |
30057504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 30715735 - 30715877
Alignment:
| Q |
6 |
gtactgattttagttgatcctttaggagaaatttagttgagaatt-atctttctatggttta-agtcagaattttgttaagaatttcatagtactgaaat |
103 |
Q |
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|||| |||||||| ||||||||||||| || |||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| |||| |
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| T |
30715735 |
gtacagattttaggtgatcctttaggacaattttagttgagaatttatctttctatggttttgagtcagaattttgttgagaatttcatagtactaaaat |
30715834 |
T |
|
| Q |
104 |
tttgttggtacgttatttgcagatttttaaggaatattgacgg |
146 |
Q |
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| | |||||| ||||||||| |||||||| |||||||||||| |
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| T |
30715835 |
tgtcttggtatgttatttgctaatttttaaagaatattgacgg |
30715877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 30747104 - 30747010
Alignment:
| Q |
6 |
gtactgattttagttgatcctttaggagaaatttagttgagaa-ttatctttctatgg-tttaagtcagaattttgttaagaatttcatagtact |
98 |
Q |
| |
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|||| |||||||| ||||||||||||| |||||||||| |||| |||||||||||||| ||| ||||||||||||||| |||||||||||||||| |
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| T |
30747104 |
gtacagattttaggtgatcctttaggacaaatttagttcagaatttatctttctatggctttgagtcagaattttgttgagaatttcatagtact |
30747010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 30204647 - 30204550
Alignment:
| Q |
145 |
gggtgtagatgcatgcaccaaactctttgaccaa-------cctgtgaaggattaaactttttcttggttgcatatttgatctctaggtatttcttaa |
235 |
Q |
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|||||| |||||||||| |||||||||||||||| ||| || ||||||| |||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
30204647 |
gggtgttgatgcatgcatcaaactctttgaccaattcaagtcctatgcaggattatactttttcttggatgcatatttgagctctaggtatttcttaa |
30204550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 29850713 - 29850623
Alignment:
| Q |
1 |
tcttagtactgattttagttgatcctttaggagaaatttagttgagaattatctttc-tatgg-tttaagtcagaattttgttaagaattt |
89 |
Q |
| |
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|||||||||| ||||||| ||||| ||||||||||||||||||||||||| |||| ||||| ||| ||||||||||||||| ||||||| |
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| T |
29850713 |
tcttagtactaattttaggtgatcttttaggagaaatttagttgagaatttcatttcttatggctttgagtcagaattttgttgagaattt |
29850623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 29869461 - 29869355
Alignment:
| Q |
1 |
tcttagtactgattttagttgatcctttaggagaaatttagttgagaattatc-tttctatggttt-aagtcagaattttgttaagaatttcatagtact |
98 |
Q |
| |
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|||||||||||||||||| |||||||||||| ||||||||||||||||| | ||||||| |||| ||||||||||||| ||||| ||| ||| ||| |
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| T |
29869461 |
tcttagtactgattttaggtgatcctttagggtaaatttagttgagaatttccttttctatagtttcgagtcagaattttggtaagacttttgtagcact |
29869362 |
T |
|
| Q |
99 |
gaaattt |
105 |
Q |
| |
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||||||| |
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|
| T |
29869361 |
gaaattt |
29869355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 29849699 - 29849647
Alignment:
| Q |
183 |
tgaaggattaaactttttcttggttgcatatttgatctctaggtatttcttaa |
235 |
Q |
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|||||| ||| |||||||||||| ||||||||| | ||| ||||||||||||| |
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| T |
29849699 |
tgaagggttatactttttcttgggtgcatatttaagctccaggtatttcttaa |
29849647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 6 - 232
Target Start/End: Original strand, 20300420 - 20300648
Alignment:
| Q |
6 |
gtactgattttagttgatcctttaggagaaatttagttgagaatt-atctttctatgg-tttaagtcagaattttgttaagaatttcatagtactgaaat |
103 |
Q |
| |
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||||| ||||||| ||||||||||||| ||||||||||||||||| || ||||||||| ||| |||||||||||||| ||||||||| | |||| |||| |
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| T |
20300420 |
gtacttattttaggtgatcctttaggacaaatttagttgagaatttatatttctatggctttgagtcagaattttgtgaagaatttcgttatactaaaat |
20300519 |
T |
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| Q |
104 |
tttgttggtacgttatttgcagatttttaaggaatattgacgggtgtagatgcatgcaccaaactctttgaccaacctgtgaaggattaaactttttctt |
203 |
Q |
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| T |
20300520 |
cgtcatggtatgttatttgcagatttttaaagaatattgacagttgtcaatgtatgcactaaactctttgaccaacctgtgaaggattaaacattttctt |
20300619 |
T |
|
| Q |
204 |
ggttgcatatttgatctctaggtatttct |
232 |
Q |
| |
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||||||||||||||| |||| |||||||| |
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|
| T |
20300620 |
ggttgcatatttgatttctaagtatttct |
20300648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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