View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1335_low_5 (Length: 575)

Name: NF1335_low_5
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1335_low_5
NF1335_low_5
[»] chr4 (9 HSPs)
chr4 (70-575)||(52249454-52249958)
chr4 (205-542)||(41120031-41120366)
chr4 (425-542)||(41126668-41126785)
chr4 (117-189)||(2588507-2588579)
chr4 (117-192)||(16497926-16498001)
chr4 (116-189)||(5650774-5650847)
chr4 (87-175)||(39599135-39599223)
chr4 (140-192)||(28075448-28075500)
chr4 (140-192)||(11156548-11156600)
[»] chr7 (4 HSPs)
chr7 (117-191)||(12859261-12859335)
chr7 (116-191)||(36167746-36167821)
chr7 (116-192)||(19886571-19886647)
chr7 (116-192)||(32775170-32775246)
[»] chr3 (5 HSPs)
chr3 (87-191)||(9454604-9454708)
chr3 (116-191)||(53208700-53208775)
chr3 (118-192)||(7322854-7322928)
chr3 (116-187)||(32130160-32130231)
chr3 (155-192)||(1915483-1915520)
[»] chr5 (6 HSPs)
chr5 (116-191)||(7992423-7992498)
chr5 (116-192)||(32325826-32325902)
chr5 (116-191)||(12904995-12905070)
chr5 (430-525)||(4319862-4319957)
chr5 (140-192)||(34641930-34641982)
chr5 (155-192)||(28827502-28827539)
[»] chr8 (8 HSPs)
chr8 (116-190)||(34784534-34784608)
chr8 (116-187)||(3117707-3117778)
chr8 (91-172)||(29168536-29168617)
chr8 (116-192)||(20900773-20900849)
chr8 (116-189)||(1548139-1548212)
chr8 (118-191)||(3277518-3277591)
chr8 (116-191)||(23033396-23033471)
chr8 (155-192)||(15657346-15657383)
[»] chr2 (7 HSPs)
chr2 (116-189)||(44673172-44673245)
chr2 (119-191)||(25438287-25438359)
chr2 (140-191)||(21006375-21006426)
chr2 (140-192)||(6536544-6536596)
chr2 (140-191)||(24132211-24132262)
chr2 (138-187)||(37154923-37154972)
chr2 (155-192)||(39574644-39574681)
[»] chr6 (1 HSPs)
chr6 (116-191)||(13425691-13425766)
[»] chr1 (2 HSPs)
chr1 (140-192)||(23963006-23963058)
chr1 (87-145)||(47523697-47523755)
[»] scaffold0003 (1 HSPs)
scaffold0003 (148-192)||(247184-247228)


Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 70 - 575
Target Start/End: Original strand, 52249454 - 52249958
Alignment:
Q  70 cagagaaccaagcaataaaacagagtaaatccgaaccagagtgaagtcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  52249454 cagagaaccaagcaataaaacagagtaaatccgaaccagagtgaagtcgaagcacggtagaggtgctgtggcacgtaagatcgtgcgatcctacgtactg 52249553  T
Q  170 ggactcattcctgactaccttggatggaactcctgcatacattgctcctgagattttattacaaaaggagtacaacggaaagttatctcgggttttatca 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  52249554 ggactcattcctgactaccttggatggaactcctgcatacattgctccagaggttttattacgaaaggagtacaacggaaagttatctcgggttttatca 52249653  T
Q  270 atcattttcttaaaaaccacgtttcaaaccactttttatggctattaacgaccatcgtttaacaattgacaaatataataatacagtatcatatcgatta 369  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52249654 atcattttcttaaaaaccacgtttcaaatcactttttatggctattaacgaccatcgtttaacaattgacaaatataataatacagtatcatatcgatta 52249753  T
Q  370 aaaagttcaccgtttagnnnnnnnttgtcgattcagttagtgtttttgactatttttgtatagattgcagatgtgtggtcctatggtgtgacactttatg 469  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  52249754 aaaagttcaccgtttag-taaaaattgtcgattcagttagtgtttttgactatttttgtatagattgcagatgtgtgttcctatggtgtgacactttatg 52249852  T
Q  470 gcatgctagttggtgcacatccatttgaagaaccagaagatcatagatatttcagaaagactattggggtgagctctaattctacttcaggttcaaagtg 569  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52249853 gcatgctagttggtgcacatccatttgaagaaccagaagatcatggatatttcagaaagactattggggtgagctctaattctacttcaggttcaaagtg 52249952  T
Q  570 gcattc 575  Q
     |||||    
T  52249953 ccattc 52249958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 205 - 542
Target Start/End: Original strand, 41120031 - 41120366
Alignment:
Q  205 catacattgctcctgagattttattacaaaaggagtacaacggaaagttatctcgggttttatcaatcattttc--ttaaaaaccacgtttcaaaccact 302  Q
    |||||||| |||||||| || | ||||||||||||||| || ||||| |  ||  | |||| || |||||||||  |||||||| ||||||||||| |||    
T  41120031 catacattactcctgaggttctgttacaaaaggagtacgacagaaaggtgcctgagattttctctatcattttcgattaaaaactacgtttcaaactact 41120130  T
Q  303 ttttatggctattaacgaccatcgtttaacaattgacaaata-taataatacagtatcatatcgattaaaaagttcaccgtttagnnnnnnnttgtcgat 401  Q
    | |||||||| | ||| ||||| ||||||||||||||||||| ||||| |||||| || ||| ||||||||||||||| ||||||       | ||||||    
T  41120131 tcttatggct-taaacaaccatggtttaacaattgacaaatagtaatagtacagtctcgtattgattaaaaagttcacggtttagtaaaaaat-gtcgat 41120228  T
Q  402 tcagttagtgtttttgactatttttgtatagattgcagatgtgtggtcctatggtgtgacactttatggcatgctagttggtgcacatccatttgaagaa 501  Q
    |||||||||||||||| || ||   || |||||||||||| ||||||||| |||||||||||||||||  ||||||||||||||| ||||||||||||||    
T  41120229 tcagttagtgtttttggctctt---gtgtagattgcagatatgtggtcctgtggtgtgacactttatgttatgctagttggtgcatatccatttgaagaa 41120325  T
Q  502 ccagaagatcatagatatttcagaaagactattggggtgag 542  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  41120326 ccagaagatcataggaatttcagaaagactattggggtgag 41120366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 425 - 542
Target Start/End: Original strand, 41126668 - 41126785
Alignment:
Q  425 ttgtatagattgcagatgtgtggtcctatggtgtgacactttatggcatgctagttggtgcacatccatttgaagaaccagaagatcatagatatttcag 524  Q
    |||| |||||||||||||| ||||| | |||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||| |||| |||||||    
T  41126668 ttgtgtagattgcagatgtttggtcttgtggtgtgacactctatgtcatgctagttggtgcatatccatttgaagaaccagaagatcctagaaatttcag 41126767  T
Q  525 aaagactattggggtgag 542  Q
    ||||||||||||||||||    
T  41126768 aaagactattggggtgag 41126785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 2588507 - 2588579
Alignment:
Q  117 cgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactacct 189  Q
    ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2588507 cgaagtacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactacct 2588579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 16497926 - 16498001
Alignment:
Q  117 cgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 192  Q
    ||||||||||| |||||||| |||||| || |||||||||||||||||||||||||||| ||| ||||||||||||    
T  16497926 cgaagcacggtcgaggtgctgtggcacatacgatcgtgcgatcctacgtgctgggactcgttcttgactaccttgg 16498001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 5650774 - 5650847
Alignment:
Q  116 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactacct 189  Q
    |||||||||||| |||||||| |||||||| |||| ||||||||||||||||| |||||| |||||||||||||    
T  5650774 tcgaagcacggtcgaggtgctgtggcacgtgagattgtgcgatcctacgtgcttggactcgttcctgactacct 5650847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 39599135 - 39599223
Alignment:
Q  87 aaacagagtaaatccgaaccagagtgaagtcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactc 175  Q
    |||||||| ||| |||||||||||| ||||||||||||  | |||||| | ||| ||||||||||||| ||||||||| ||||||||||    
T  39599135 aaacagagcaaaaccgaaccagagtaaagtcgaagcacaattgaggtgttgtggaacgtaagatcgtgtgatcctacgagctgggactc 39599223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 28075500 - 28075448
Alignment:
Q  140 gcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 192  Q
    ||||||||||||||||||||||||  ||||||||||  ||||| |||||||||    
T  28075500 gcacgtaagatcgtgcgatcctacaagctgggactcgatcctggctaccttgg 28075448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 11156600 - 11156548
Alignment:
Q  140 gcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 192  Q
    |||| ||||||| |||||||||||||||||| ||||  ||||| |||||||||    
T  11156600 gcacataagatcatgcgatcctacgtgctggaactcgatcctggctaccttgg 11156548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 12859261 - 12859335
Alignment:
Q  117 cgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 191  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12859261 cgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 12859335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 36167746 - 36167821
Alignment:
Q  116 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 191  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36167746 tcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactaccttg 36167821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 19886647 - 19886571
Alignment:
Q  116 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 192  Q
    |||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  19886647 tcgaagcacggtcgaggtgctgtggcacgtaagatcgtgtgatcctacgtgctgggactcgttcctgactaccttgg 19886571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 32775246 - 32775170
Alignment:
Q  116 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 192  Q
    |||||||||||| |||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||    
T  32775246 tcgaagcacggtcgaggtgctgtggcacgtaaggtcgtgtgatcctacatgctgggactcgttcctgactaccttgg 32775170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 87 - 191
Target Start/End: Complemental strand, 9454708 - 9454604
Alignment:
Q  87 aaacagagtaaatccgaaccagagtgaagtcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgacta 186  Q
    |||||||| ||| |||||||||||| ||||| ||||||||| |||||||| |||||||||||||||||||||||||| |||||||| || ||| ||||||    
T  9454708 aaacagagcaaaaccgaaccagagtaaagtcaaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacatgctgggaatcgttcttgacta 9454609  T
Q  187 ccttg 191  Q
    |||||    
T  9454608 ccttg 9454604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 53208700 - 53208775
Alignment:
Q  116 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 191  Q
    ||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  53208700 tcgaaacacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactaccttg 53208775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 7322928 - 7322854
Alignment:
Q  118 gaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 192  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  7322928 gaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctggctaccttgg 7322854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 32130231 - 32130160
Alignment:
Q  116 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactac 187  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  32130231 tcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgcgactcgttcctgactac 32130160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 1915520 - 1915483
Alignment:
Q  155 cgatcctacgtgctgggactcattcctgactaccttgg 192  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  1915520 cgatcctacgtgctgggactcgttcctgtctaccttgg 1915483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 7992423 - 7992498
Alignment:
Q  116 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 191  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7992423 tcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactaccttg 7992498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 32325826 - 32325902
Alignment:
Q  116 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 192  Q
    |||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  32325826 tcgaagcacggtcgaggtgctgtggcacgtacgatcgtgcgatcctacgtgctgggactcgttcctgactaccttgg 32325902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 12904995 - 12905070
Alignment:
Q  116 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 191  Q
    |||||||| ||| || ||| | ||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  12904995 tcgaagcatggtcgatgtgttgtggcacgtaagatcgtgcgatcctacgtgctggaactcgttcctgactaccttg 12905070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 430 - 525
Target Start/End: Complemental strand, 4319957 - 4319862
Alignment:
Q  430 tagattgcagatgtgtggtcctatggtgtgacactttatggcatgctagttggtgcacatccatttgaagaaccagaagatcatagatatttcaga 525  Q
    |||||||||||||| ||||| | ||||||||| ||||||| |||| |||||||  || | || |||||||| |||||||||| |||| ||||||||    
T  4319957 tagattgcagatgtttggtcatgtggtgtgactctttatgtcatgttagttggatcatacccttttgaagatccagaagatcctagaaatttcaga 4319862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 34641930 - 34641982
Alignment:
Q  140 gcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 192  Q
    |||||||||||||||||||||||| |||||||||||  ||||| |||||||||    
T  34641930 gcacgtaagatcgtgcgatcctacatgctgggactcgatcctggctaccttgg 34641982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 28827539 - 28827502
Alignment:
Q  155 cgatcctacgtgctgggactcattcctgactaccttgg 192  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  28827539 cgatcctacgtgctgggactcgttcctgtctaccttgg 28827502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 34784534 - 34784608
Alignment:
Q  116 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactacctt 190  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34784534 tcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactacctt 34784608  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 3117778 - 3117707
Alignment:
Q  116 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactac 187  Q
    |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3117778 tcgaagcacggtcgaggtactgtggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactac 3117707  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 29168536 - 29168617
Alignment:
Q  91 agagtaaatccgaaccagagtgaagtcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctggga 172  Q
    |||| ||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |||||||    
T  29168536 agagcaaaaccgaaccagagtgaagtcgaagcacggtcgaggtgctgtggcacgtaagatcgtgtgatcctacgagctggga 29168617  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 20900849 - 20900773
Alignment:
Q  116 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 192  Q
    ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  20900849 tcgaagcacagtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggacttgttcctgactaccttgg 20900773  T

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Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 1548212 - 1548139
Alignment:
Q  116 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactacct 189  Q
    |||||||||| | |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  1548212 tcgaagcacgttcgaggtgctgtggcacgtaagatcgtgcgatcctacatgctgggactcgttcctgactacct 1548139  T

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Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 3277591 - 3277518
Alignment:
Q  118 gaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 191  Q
    |||||||||| |||||| | |||||||||||||||||||||||||| |||||||| || |||||||||||||||    
T  3277591 gaagcacggtcgaggtgttgtggcacgtaagatcgtgcgatcctacatgctgggattcgttcctgactaccttg 3277518  T

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Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 23033471 - 23033396
Alignment:
Q  116 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 191  Q
    |||||||||||| |||||| | |||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||    
T  23033471 tcgaagcacggtcgaggtgttgtggcacgtaagatcatgcgatcctacatgctgggactcgttcctgagtaccttg 23033396  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 15657383 - 15657346
Alignment:
Q  155 cgatcctacgtgctgggactcattcctgactaccttgg 192  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  15657383 cgatcctacgtgctgggactcgttcctgactaccttgg 15657346  T

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Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 44673245 - 44673172
Alignment:
Q  116 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactacct 189  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44673245 tcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactacct 44673172  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 25438359 - 25438287
Alignment:
Q  119 aagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 191  Q
    ||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  25438359 aagcacggtcgaggtgctgtggcacgtaagatcatgcgatcctacgtgctgggactcgttcctgactaccttg 25438287  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 21006375 - 21006426
Alignment:
Q  140 gcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 191  Q
    ||||||||||||||||||||||||||||||||||||  ||||| ||||||||    
T  21006375 gcacgtaagatcgtgcgatcctacgtgctgggactcgatcctggctaccttg 21006426  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 6536596 - 6536544
Alignment:
Q  140 gcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 192  Q
    |||||||||||||||||||||||| |||||||||||  ||||| |||||||||    
T  6536596 gcacgtaagatcgtgcgatcctacatgctgggactcgatcctggctaccttgg 6536544  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 24132262 - 24132211
Alignment:
Q  140 gcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 191  Q
    ||||||||||||||||||||||||||||||||| ||  ||||| ||||||||    
T  24132262 gcacgtaagatcgtgcgatcctacgtgctgggattcgatcctggctaccttg 24132211  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 37154923 - 37154972
Alignment:
Q  138 tggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactac 187  Q
    ||||||||||||||||||||||||||| || ||||||| ||| |||||||    
T  37154923 tggcacgtaagatcgtgcgatcctacgagccgggactcgttcttgactac 37154972  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 39574644 - 39574681
Alignment:
Q  155 cgatcctacgtgctgggactcattcctgactaccttgg 192  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  39574644 cgatcctacgtgctgggactcgttcctgtctaccttgg 39574681  T

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Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 13425691 - 13425766
Alignment:
Q  116 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 191  Q
    |||||||||||| |||||||| |||||| ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  13425691 tcgaagcacggtcgaggtgctgtggcacataagatcgtgcgatcctacgtgctgcgactcgttcctgactaccttg 13425766  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 23963006 - 23963058
Alignment:
Q  140 gcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 192  Q
    |||||||||||| ||||||||||||||||||||| |  ||||| |||||||||    
T  23963006 gcacgtaagatcatgcgatcctacgtgctgggacccgatcctggctaccttgg 23963058  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 47523755 - 47523697
Alignment:
Q  87 aaacagagtaaatccgaaccagagtgaagtcgaagcacggtagaggtgctttggcacgt 145  Q
    |||||||| ||| |||||||| ||| |||||||||||| || |||||||| ||||||||    
T  47523755 aaacagagcaaaaccgaaccatagtaaagtcgaagcacagtcgaggtgctgtggcacgt 47523697  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 247184 - 247228
Alignment:
Q  148 gatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 192  Q
    |||||| || |||||||||||||||||  ||||||||||||||||    
T  247184 gatcgtccgttcctacgtgctgggactggttcctgactaccttgg 247228  T

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