View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1335_low_50 (Length: 251)

Name: NF1335_low_50
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1335_low_50
NF1335_low_50
[»] chr4 (11 HSPs)
chr4 (30-251)||(2390991-2391212)
chr4 (36-251)||(2381369-2381584)
chr4 (30-250)||(2380108-2380319)
chr4 (120-234)||(2382562-2382676)
chr4 (46-103)||(2367678-2367735)
chr4 (75-175)||(2621192-2621292)
chr4 (57-100)||(1547469-1547512)
chr4 (60-103)||(2373256-2373299)
chr4 (36-111)||(2460589-2460664)
chr4 (57-104)||(12126879-12126926)
chr4 (55-100)||(6007668-6007713)
[»] chr1 (3 HSPs)
chr1 (36-160)||(15837955-15838079)
chr1 (39-86)||(9581951-9581998)
chr1 (39-85)||(9587510-9587556)
[»] chr3 (1 HSPs)
chr3 (56-100)||(513446-513490)
[»] chr8 (2 HSPs)
chr8 (55-100)||(32152209-32152254)
chr8 (36-101)||(39516859-39516924)
[»] chr6 (1 HSPs)
chr6 (45-100)||(10578802-10578857)
[»] chr5 (2 HSPs)
chr5 (54-100)||(32268773-32268819)
chr5 (55-100)||(41900267-41900312)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 2390991 - 2391212
Alignment:
Q  30 cactatactttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctt 129  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2390991 cactatactttcaagtctctttctatcgtctcgaaacaattactctccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctt 2391090  T
Q  130 tcattcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctcaacacaatcaccccaacacgct 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  2391091 tcattcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctcaatgcaatcgccccaacacgct 2391190  T
Q  230 tcttacccaaatctccactttc 251  Q
    ||||||||||||||||||||||    
T  2391191 tcttacccaaatctccactttc 2391212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 36 - 251
Target Start/End: Original strand, 2381369 - 2381584
Alignment:
Q  36 actttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctttcattc 135  Q
    ||||||||||||||||| |||||||||||||| |||||||| |||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  2381369 actttcaagtctctttccatcgtctccaaacagttactctcgatcaccaacagtctccgattctccgtcaaaatcaccctacaaaccatccctttcattc 2381468  T
Q  136 ctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctcaacacaatcaccccaacacgcttcttac 235  Q
    ||||| |||||||||| ||||||| ||||||||||||||||||| |||||| |||||||| |||||| |||| ||||||||||||||||| |||||||||    
T  2381469 ctcaactcttccaacgcttctctagtgtcacatccctcaatctcgcatccagcaacctcacttacttttctctacacaatcaccccaacatgcttcttac 2381568  T
Q  236 ccaaatctccactttc 251  Q
    |||||||||| |||||    
T  2381569 ccaaatctccgctttc 2381584  T

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Target: chr4; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 2380108 - 2380319
Alignment:
Q  30 cactatactttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctt 129  Q
    |||| |||| ||||||||||||| |||||||||||||| |||||||| |||||| ||| | |||||||| || |||||||||||||||||||||||||||    
T  2380108 cactgtactgtcaagtctctttccatcgtctccaaacagttactctcgatcacctacagtttccgattcaccctcaaaatcacccaacaaaccatccctt 2380207  T
Q  130 tcattcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctcaacacaatcaccccaacacgct 229  Q
    | |||||||   |||| ||| |||    |||  |||||||||||||||||||||||| |||||         || ||||| ||||||||| |||||||||    
T  2380208 ttattcctcgcctcttgcaaaggtgtcgtaacatcacatccctcaatctcacatccatcaacc---------tccctcaatacaatcacctcaacacgct 2380298  T
Q  230 tcttacccaaatctccacttt 250  Q
    |||||| ||||||||| ||||    
T  2380299 tcttacacaaatctccgcttt 2380319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 234
Target Start/End: Original strand, 2382562 - 2382676
Alignment:
Q  120 accatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctcaacacaatcacc 219  Q
    |||||||||||||||||||   |||||| | || || |||||||||||||||||||| ||||||||  |||||||| | ||||||||||| ||||| |||    
T  2382562 accatccctttcattcctcgcctcttccgaaggctccctaatgtcacatccctcaatatcacatccctcaacctcactcacttctctcaatacaattacc 2382661  T
Q  220 ccaacacgcttctta 234  Q
     ||||||||||||||    
T  2382662 tcaacacgcttctta 2382676  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 2367678 - 2367735
Alignment:
Q  46 ctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctccat 103  Q
    ||||||| ||||||||||||||||| |||||||||||||||  |||||||||||||||    
T  2367678 ctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgattctccat 2367735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 2621192 - 2621292
Alignment:
Q  75 tccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctca 174  Q
    ||||||||||||  ||| || |||||||||| |||| || |  |||||||||||||||||||||   ||||| |  ||||| ||||| ||||||||||||    
T  2621192 tccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctca 2621291  T
Q  175 a 175  Q
    |    
T  2621292 a 2621292  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 1547469 - 1547512
Alignment:
Q  57 gtctccaaacaattactctccatcaccaacaatctccgattctc 100  Q
    |||||||||||||| |||||||||||||||  ||||||||||||    
T  1547469 gtctccaaacaattcctctccatcaccaaccgtctccgattctc 1547512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 2373256 - 2373299
Alignment:
Q  60 tccaaacaattactctccatcaccaacaatctccgattctccat 103  Q
    ||||||||||| ||||||||||||||  ||||||||||||||||    
T  2373256 tccaaacaatttctctccatcaccaatcatctccgattctccat 2373299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 2460664 - 2460589
Alignment:
Q  36 actttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctccatcaaaatca 111  Q
    |||||||| ||||| || || ||||||||||| || ||||||||||||||   ||||||||||||  |||||||||    
T  2460664 actttcaaatctctctccatggtctccaaacagttcctctccatcaccaatcgtctccgattctctctcaaaatca 2460589  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 12126926 - 12126879
Alignment:
Q  57 gtctccaaacaattactctccatcaccaacaatctccgattctccatc 104  Q
    |||||||||||||| |||||||||||||||  ||||| ||||||||||    
T  12126926 gtctccaaacaatttctctccatcaccaaccgtctcctattctccatc 12126879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 6007713 - 6007668
Alignment:
Q  55 tcgtctccaaacaattactctccatcaccaacaatctccgattctc 100  Q
    ||||||| ||||| || |||||||||||||||| ||||||||||||    
T  6007713 tcgtctcgaaacagttcctctccatcaccaacagtctccgattctc 6007668  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 160
Target Start/End: Original strand, 15837955 - 15838079
Alignment:
Q  36 actttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctttcattc 135  Q
    ||||||||||| || || || ||||||||||| || |||||||||||||||  ||||||||||||| |||||||||   | ||||| |||||||||||||    
T  15837955 actttcaagtccctctcgatggtctccaaacagtttctctccatcaccaaccgtctccgattctccctcaaaatcatagatcaaacaatccctttcattc 15838054  T
Q  136 ctcaaatcttccaacggttctctaa 160  Q
    || |  |||||||| ||||| ||||    
T  15838055 ctaacctcttccaaaggttccctaa 15838079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 9581998 - 9581951
Alignment:
Q  39 ttcaagtctctttctatcgtctccaaacaattactctccatcaccaac 86  Q
    ||||||||||||||| ||||||||||||| || ||||| |||||||||    
T  9581998 ttcaagtctctttctgtcgtctccaaacagtttctctctatcaccaac 9581951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 9587556 - 9587510
Alignment:
Q  39 ttcaagtctctttctatcgtctccaaacaattactctccatcaccaa 85  Q
    ||||||||||||||| ||||||||||||| || |||||| |||||||    
T  9587556 ttcaagtctctttctgtcgtctccaaacagtttctctccgtcaccaa 9587510  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 513446 - 513490
Alignment:
Q  56 cgtctccaaacaattactctccatcaccaacaatctccgattctc 100  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||    
T  513446 cgtctcaaaacagttactctccatcaccaacaatctccgattctc 513490  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 32152254 - 32152209
Alignment:
Q  55 tcgtctccaaacaattactctccatcaccaacaatctccgattctc 100  Q
    ||||||||||||| || |||||||||||||||| ||||||||||||    
T  32152254 tcgtctccaaacagttcctctccatcaccaacagtctccgattctc 32152209  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 39516924 - 39516859
Alignment:
Q  36 actttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctcc 101  Q
    |||||||||||||| || |||||||||| |||||| ||| |||||||||||  |||| ||||||||    
T  39516924 actttcaagtctctctccatcgtctccagacaatttctcgccatcaccaaccgtctcagattctcc 39516859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 10578802 - 10578857
Alignment:
Q  45 tctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctc 100  Q
    ||||| ||| |||||||||||||||| |||||||| ||||||| ||||| ||||||    
T  10578802 tctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctc 10578857  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 32268819 - 32268773
Alignment:
Q  54 atcgtctccaaacaattactctccatcaccaacaatctccgattctc 100  Q
    |||||||||||||| ||||||||||||||||||  ||| ||||||||    
T  32268819 atcgtctccaaacagttactctccatcaccaaccgtcttcgattctc 32268773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 41900267 - 41900312
Alignment:
Q  55 tcgtctccaaacaattactctccatcaccaacaatctccgattctc 100  Q
    ||||||||||||| || |||||||||||||||| ||| ||||||||    
T  41900267 tcgtctccaaacagtttctctccatcaccaacactcttcgattctc 41900312  T

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