View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1335_low_51 (Length: 251)

Name: NF1335_low_51
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1335_low_51
NF1335_low_51
[»] chr8 (1 HSPs)
chr8 (24-203)||(18306792-18306966)
[»] chr3 (3 HSPs)
chr3 (47-235)||(41753347-41753524)
chr3 (163-233)||(41750128-41750198)
chr3 (166-235)||(41744679-41744748)
[»] chr1 (1 HSPs)
chr1 (166-235)||(29589979-29590048)


Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 24 - 203
Target Start/End: Original strand, 18306792 - 18306966
Alignment:
Q  24 cattaaaatcaagtagtaacatatcaatgagtccttttcactatacgatgtgtgaggcttttctttacattcatttcaagcaaaagaggttgaacgttca 123  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||         
T  18306792 cattaaaatcaagtagtaacatagcaatgagtcctcttcactatacgatgtgtgagtcttttctttacattcatttcaagcaaaagaggttgaac----- 18306886  T
Q  124 ttcaaggattgagggtaattaattaatcttctcttacactatttagctttgaaacatgcttgcctcagcttctcaatttc 203  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||    
T  18306887 ttcaaggattaagggtaattaattaatcttctcttacactatttagctttaaaacattcttgcctcagcttctcgatttc 18306966  T

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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 47 - 235
Target Start/End: Original strand, 41753347 - 41753524
Alignment:
Q  47 tcaatgagtccttttcactatacgatgtgtgaggcttttctttacattcatttcaagcaaaagaggttgaacgttcattcaaggattgagggtaattaat 146  Q
    |||||||||||||  ||||||||  |||||||||||||| ||||||||||||||||||||||||||| |||      |||||||||||||||    ||||    
T  41753347 tcaatgagtcctt--cactatactctgtgtgaggcttttttttacattcatttcaagcaaaagaggtagaa-----gttcaaggattgaggg----taat 41753435  T
Q  147 taatcttctcttacactatttagctttgaaacatgcttgcctcagcttctcaatttcttcattcaattccatttcaggaagtttctcca 235  Q
    |||||||||||| |  || |||||| | |||||||||||||||||||| |  || ||||||||||||||||||||||||||||||||||    
T  41753436 taatcttctcttgctatacttagctctaaaacatgcttgcctcagctttttgatctcttcattcaattccatttcaggaagtttctcca 41753524  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 41750128 - 41750198
Alignment:
Q  163 tatttagctttgaaacatgcttgcctcagcttctcaatttcttcattcaattccatttcaggaagtttctc 233  Q
    ||||||||||| | |||||| | |||||||||||  |||||||| ||||||||||||||||||||||||||    
T  41750128 tatttagctttaatacatgcattcctcagcttcttgatttcttcgttcaattccatttcaggaagtttctc 41750198  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 41744679 - 41744748
Alignment:
Q  166 ttagctttgaaacatgcttgcctcagcttctcaatttcttcattcaattccatttcaggaagtttctcca 235  Q
    |||||||| || |||||||||||||||||||  ||||| |||||||| | |||| | |||||||||||||    
T  41744679 ttagctttaaagcatgcttgcctcagcttcttgatttcatcattcaaatgcattcccggaagtttctcca 41744748  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 29590048 - 29589979
Alignment:
Q  166 ttagctttgaaacatgcttgcctcagcttctcaatttcttcattcaattccatttcaggaagtttctcca 235  Q
    |||||||| || |||||||||||||||||||  ||||| |||||||| |||||| | |||||||||||||    
T  29590048 ttagctttaaagcatgcttgcctcagcttcttgatttcgtcattcaaatccattcccggaagtttctcca 29589979  T

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