View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1335_low_54 (Length: 247)

Name: NF1335_low_54
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1335_low_54
NF1335_low_54
[»] chr6 (13 HSPs)
chr6 (16-223)||(22503918-22504127)
chr6 (16-142)||(2618529-2618654)
chr6 (16-145)||(29401313-29401443)
chr6 (16-142)||(3514611-3514739)
chr6 (16-139)||(12614481-12614607)
chr6 (16-142)||(6360934-6361064)
chr6 (16-145)||(31258331-31258461)
chr6 (107-141)||(350682-350716)
chr6 (16-57)||(7525015-7525056)
chr6 (22-76)||(6294436-6294490)
chr6 (104-141)||(11088832-11088869)
chr6 (104-141)||(31861250-31861287)
chr6 (22-58)||(30915207-30915243)
[»] chr4 (16 HSPs)
chr4 (16-145)||(11681501-11681630)
chr4 (16-145)||(11689780-11689909)
chr4 (16-142)||(53011890-53012016)
chr4 (16-142)||(32130552-32130679)
chr4 (16-142)||(27632573-27632700)
chr4 (16-139)||(44478215-44478338)
chr4 (16-142)||(19661554-19661682)
chr4 (16-76)||(23425995-23426055)
chr4 (16-142)||(16887746-16887872)
chr4 (16-142)||(41038424-41038553)
chr4 (16-142)||(23256768-23256898)
chr4 (16-142)||(29221386-29221510)
chr4 (16-57)||(28463436-28463477)
chr4 (22-141)||(26328796-26328912)
chr4 (106-139)||(5545592-5545625)
chr4 (22-58)||(24449281-24449317)
[»] chr2 (20 HSPs)
chr2 (16-145)||(4856168-4856297)
chr2 (16-145)||(45619151-45619280)
chr2 (16-141)||(7993807-7993932)
chr2 (16-145)||(26151507-26151636)
chr2 (17-138)||(13020598-13020719)
chr2 (16-144)||(42759516-42759645)
chr2 (16-154)||(18676059-18676199)
chr2 (16-145)||(25222498-25222629)
chr2 (16-142)||(6530834-6530963)
chr2 (16-142)||(12269600-12269727)
chr2 (16-142)||(2063981-2064106)
chr2 (16-142)||(36481570-36481696)
chr2 (16-142)||(41096302-41096425)
chr2 (16-142)||(42411319-42411447)
chr2 (16-142)||(45042565-45042692)
chr2 (22-141)||(1226031-1226149)
chr2 (89-142)||(19367187-19367240)
chr2 (89-142)||(34061628-34061681)
chr2 (22-58)||(17117491-17117527)
chr2 (22-58)||(18172788-18172824)
[»] chr3 (21 HSPs)
chr3 (16-147)||(24252796-24252927)
chr3 (16-138)||(8364348-8364470)
chr3 (16-142)||(52654885-52655011)
chr3 (16-145)||(6715614-6715743)
chr3 (16-139)||(27110636-27110761)
chr3 (16-142)||(28132497-28132625)
chr3 (16-139)||(25598848-25598971)
chr3 (16-142)||(27729533-27729658)
chr3 (16-141)||(21784544-21784672)
chr3 (16-142)||(51939317-51939444)
chr3 (17-138)||(23067492-23067613)
chr3 (16-147)||(23164329-23164461)
chr3 (16-139)||(13401635-13401756)
chr3 (16-142)||(20762225-20762355)
chr3 (16-142)||(46791459-46791586)
chr3 (21-142)||(29387511-29387637)
chr3 (16-49)||(18408366-18408399)
chr3 (108-141)||(40151896-40151929)
chr3 (90-154)||(15998527-15998591)
chr3 (22-58)||(21596516-21596552)
chr3 (22-58)||(27303367-27303403)
[»] chr5 (15 HSPs)
chr5 (16-145)||(26377535-26377663)
chr5 (16-145)||(26312163-26312291)
chr5 (16-145)||(37046956-37047087)
chr5 (16-145)||(13474805-13474935)
chr5 (16-142)||(12661483-12661609)
chr5 (16-139)||(36718394-36718519)
chr5 (16-146)||(13656385-13656516)
chr5 (16-142)||(13424040-13424166)
chr5 (90-141)||(931618-931669)
chr5 (16-74)||(19099145-19099203)
chr5 (22-58)||(3349575-3349611)
chr5 (22-58)||(4177382-4177418)
chr5 (90-141)||(8379208-8379257)
chr5 (22-58)||(10033733-10033769)
chr5 (18-58)||(27351527-27351567)
[»] chr1 (23 HSPs)
chr1 (16-145)||(17487038-17487168)
chr1 (16-142)||(6150897-6151024)
chr1 (16-142)||(48722128-48722255)
chr1 (16-139)||(30004673-30004796)
chr1 (16-154)||(20905035-20905174)
chr1 (16-142)||(51109861-51109990)
chr1 (16-154)||(30899835-30899979)
chr1 (16-141)||(28885434-28885560)
chr1 (16-142)||(52055727-52055852)
chr1 (16-139)||(14084463-14084588)
chr1 (21-142)||(29207855-29207982)
chr1 (16-145)||(20470787-20470918)
chr1 (16-139)||(50552670-50552796)
chr1 (16-76)||(52240365-52240425)
chr1 (16-139)||(25930778-25930902)
chr1 (16-142)||(183-311)
chr1 (16-75)||(10109899-10109961)
chr1 (107-141)||(9777678-9777712)
chr1 (16-142)||(18127701-18127826)
chr1 (109-141)||(31369276-31369308)
chr1 (109-139)||(44836492-44836522)
chr1 (22-58)||(15441470-15441506)
chr1 (22-58)||(50371316-50371352)
[»] scaffold0564 (1 HSPs)
scaffold0564 (16-145)||(1237-1366)
[»] scaffold0181 (1 HSPs)
scaffold0181 (16-143)||(16895-17022)
[»] scaffold0126 (1 HSPs)
scaffold0126 (16-145)||(16885-17015)
[»] scaffold0035 (1 HSPs)
scaffold0035 (16-122)||(22588-22694)
[»] chr8 (16 HSPs)
chr8 (16-142)||(3445710-3445834)
chr8 (17-145)||(7858260-7858389)
chr8 (16-145)||(1004231-1004362)
chr8 (16-144)||(43926086-43926212)
chr8 (16-142)||(18112300-18112425)
chr8 (16-154)||(18420355-18420497)
chr8 (16-142)||(13585474-13585607)
chr8 (16-141)||(3471774-3471899)
chr8 (16-158)||(44664349-44664495)
chr8 (16-142)||(42951557-42951684)
chr8 (16-126)||(43967846-43967959)
chr8 (89-142)||(27074722-27074775)
chr8 (90-141)||(3574859-3574910)
chr8 (90-139)||(5869085-5869134)
chr8 (22-58)||(35875081-35875117)
chr8 (22-58)||(39697784-39697820)
[»] chr7 (25 HSPs)
chr7 (16-142)||(42160885-42161011)
chr7 (16-124)||(18015361-18015469)
chr7 (16-142)||(33910239-33910366)
chr7 (16-142)||(12251046-12251176)
chr7 (16-144)||(44893788-44893918)
chr7 (16-142)||(6379847-6379973)
chr7 (16-124)||(7636104-7636212)
chr7 (16-141)||(4100133-4100261)
chr7 (22-141)||(29730853-29730969)
chr7 (16-76)||(33418944-33419005)
chr7 (90-141)||(29742043-29742094)
chr7 (27-142)||(36796134-36796249)
chr7 (89-145)||(11672839-11672895)
chr7 (90-141)||(44875923-44875974)
chr7 (22-76)||(40841072-40841126)
chr7 (105-141)||(773644-773680)
chr7 (22-58)||(28589991-28590027)
chr7 (22-56)||(3799611-3799645)
chr7 (107-141)||(40001475-40001509)
chr7 (16-57)||(46221550-46221591)
chr7 (22-58)||(773729-773765)
chr7 (22-58)||(26633545-26633581)
chr7 (22-58)||(30739307-30739343)
chr7 (22-58)||(36438197-36438233)
chr7 (22-58)||(42312192-42312228)
[»] scaffold0100 (1 HSPs)
scaffold0100 (90-142)||(45938-45990)
[»] scaffold0034 (2 HSPs)
scaffold0034 (22-58)||(99098-99134)
scaffold0034 (90-141)||(99167-99218)


Alignment Details
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 22503918 - 22504127
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat-aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    ||||||||| ||||||||||||||||||||||||| |||||| | ||| |||||||||||||        ||| |||||||||||||  ||| |||||||    
T  22503918 aattccttttatgtttagaacttcttctgattctgttttttttttaatgaaatttagctacacaaaaaaattacgttttattttactgagggtctatttt 22504017  T
Q  115 aaaaagagagtcgaacctcctatttcac-gggacaaccctgatttgatactagagttgtaatcacctattgcaggaactcagattggatatcataaagta 213  Q
    |||||||||  ||| ||||||||||||  ||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  22504018 aaaaagagaaccgagcctcctatttcatagggaagaccctgatttgatactatagttgtaatcacctattgcaggaactcagattggatagcataaagta 22504117  T
Q  214 aaataaagtt 223  Q
    ||||||||||    
T  22504118 aaataaagtt 22504127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 2618529 - 2618654
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||| |||||||||||| || ||||||| ||||||||||||| |||| ||||||| |||||        ||| |||||||||||||| ||||||||||||    
T  2618529 aattgctttcatgtttaaaagttcttcttattctgatttttt-taatgaaatttaactacacaaaaaaattacgttttattttactaggggcctatttta 2618627  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||| |||||||||||||||||    
T  2618628 aaaagagagccgaacctcctatttcac 2618654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 29401313 - 29401443
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat-aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    ||||||||| || |||||||||||||||  || ||||||||| | ||| ||||||||||| |        |||||||||||||||||| |||||||||||    
T  29401313 aattccttttatatttagaacttcttctcgttatgatttttttttaatgaaatttagctatacaaaaaaattatgttttattttactaggggcctatttt 29401412  T
Q  115 aaaaagagagtcgaacctcctatttcacggg 145  Q
    |||||||||||||| ||||||||||||||||    
T  29401413 aaaaagagagtcgagcctcctatttcacggg 29401443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 3514739 - 3514611
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatttttt--ataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattt 113  Q
    ||||||||||||||||| || |||||||||||||||||||||  ||||| ||||||| |||||        ||| |||||||||||||| ||| ||||||    
T  3514739 aattcctttcatgtttaaaagttcttctgattctgattttttttataatgaaatttaactacaaaaaaaaattacgttttattttactaagggtctattt 3514640  T
Q  114 taaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||| || |||||||||||||    
T  3514639 taaaaagagagttgagcctcctatttcac 3514611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 12614607 - 12614481
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctga----ttttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctat 111  Q
    |||||||||||||||||||| ||||||||||||| |    |||||| |||| ||||||| |||||        ||||||||||||||||||   ||||||    
T  12614607 aattcctttcatgtttagaagttcttctgattctaacttattttttttaatgaaatttaactaca-caaaaaattatgttttattttactagaagcctat 12614509  T
Q  112 tttaaaaagagagtcgaacctcctattt 139  Q
    ||||||||||||||||||||||||||||    
T  12614508 tttaaaaagagagtcgaacctcctattt 12614481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 6360934 - 6361064
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat----aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctat 111  Q
    |||||||||||||||||||| ||||| ||||| ||||||||| |    ||| |||||||||||||        |||||||||||||||||| || |||||    
T  6360934 aattcctttcatgtttagaagttcttttgattttgattttttttttttaatgaaatttagctacacaaaaaagttatgttttattttactagggacctat 6361033  T
Q  112 tttaaaaagagagtcgaacctcctatttcac 142  Q
    ||||||||||||| ||| ||| |||||||||    
T  6361034 tttaaaaagagagccgagccttctatttcac 6361064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 31258461 - 31258331
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctaca-tnnnnnnnttatgttttattttactatgggcct-attt 113  Q
    |||||||||||||||||||||||||||| |||||| |||||| |||| ||||||||||| |         ||| |||||||||||||| ||||||  |||    
T  31258461 aattcctttcatgtttagaacttcttctaattctggtttttt-taatgaaatttagctagacaaaaaaaattacgttttattttactaggggcctgtttt 31258363  T
Q  114 taaaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||||| ||| ||||||||||||||||    
T  31258362 taaaaagagagccgagcctcctatttcacggg 31258331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 350682 - 350716
Alignment:
Q  107 cctattttaaaaagagagtcgaacctcctatttca 141  Q
    |||||||||||||||||||||||||||||||||||    
T  350682 cctattttaaaaagagagtcgaacctcctatttca 350716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 7525056 - 7525015
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatttttt 57  Q
    ||||||||||||||||||||||| |||| |||||||||||||    
T  7525056 aattcctttcatgtttagaactttttcttattctgatttttt 7525015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 6294436 - 6294490
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgattttttataataaaatttagctaca 76  Q
    |||||||||||||| ||||| ||||||||||||||| |||| ||  |||||||||    
T  6294436 tttcatgtttagaagttcttttgattctgattttttttaatgaagcttagctaca 6294490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 11088832 - 11088869
Alignment:
Q  104 gggcctattttaaaaagagagtcgaacctcctatttca 141  Q
    |||||||||||||||||||||| || ||||||||||||    
T  11088832 gggcctattttaaaaagagagttgagcctcctatttca 11088869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 31861250 - 31861287
Alignment:
Q  104 gggcctattttaaaaagagagtcgaacctcctatttca 141  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  31861250 gggcctattttaaatagagagtcgagcctcctatttca 31861287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 30915243 - 30915207
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    ||||||||||| || ||||||||||||||||||||||    
T  30915243 tttcatgtttataagttcttctgattctgatttttta 30915207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 11681630 - 11681501
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||        |||||||||||||||||| ||||||||||||    
T  11681630 aattcctttcatgtttagaactttttctgattctgattttttttaatgaaatttagctacacaaaaaagttatgttttattttactaggggcctatttta 11681531  T
Q  116 aaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||||||| ||||||||||||||||    
T  11681530 aaaagagagtcgagcctcctatttcacggg 11681501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 11689909 - 11689780
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||        |||||||||||||||||| ||||||||||||    
T  11689909 aattcctttcatgtttagaactttttctgattctgattttttttaatgaaatttagctacacaaaaaagttatgttttattttactaggggcctatttta 11689810  T
Q  116 aaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||||||| ||||||||||||||||    
T  11689809 aaaagagagtcgagcctcctatttcacggg 11689780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 53011890 - 53012016
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||        ||| |||||||||||||||| ||||||||||    
T  53011890 aattcctttcatgtttagaagttcttctgattctgattttttttaatgaaatttagctacacaaaaaaattacgttttattttactatgagcctatttta 53011989  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||| ||| |||||||||||||    
T  53011990 aaaagagagccgagcctcctatttcac 53012016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 32130679 - 32130552
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatt-ttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||        ||| |||||||||||||| || ||||||||    
T  32130679 aattcctttcatgtttagaagttcttctgattctgatttttttttaataaaatttagctacacaaaaaaattacgttttattttactaaggacctatttt 32130580  T
Q  115 aaaaagagagtcgaacctcctatttcac 142  Q
    ||||  |||| ||| |||||||||||||    
T  32130579 aaaagaagagccgagcctcctatttcac 32130552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 27632573 - 27632700
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctga-ttttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||||||| ||||||||||||||| |||||| |||| || |||| |||||        ||| |||||||||||||| |||||||||||    
T  27632573 aattcctttcatgtttagaagttcttctgattctgatttttttttaatgaagtttaactacacaaaaaaattacgttttattttactaggggcctatttt 27632672  T
Q  115 aaaaagagagtcgaacctcctatttcac 142  Q
    |||| ||||| ||| |||||||||||||    
T  27632673 aaaatgagagccgagcctcctatttcac 27632700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 44478215 - 44478338
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    ||||||| | |||||||||||||||||||| || |||||||| |||| |||||||||||||        ||| ||||||||||||||  |  ||||||||    
T  44478215 aattcctcttatgtttagaacttcttctgactcggattttttttaatgaaatttagctacacaaaaaaattacgttttattttactaaagatctatttta 44478314  T
Q  116 aaaagagagtcgaacctcctattt 139  Q
    ||||||||||||||||||||||||    
T  44478315 aaaagagagtcgaacctcctattt 44478338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 19661554 - 19661682
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat--aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattt 113  Q
    |||||||||||||||||||| |||||||||||||| |||||| |  ||| ||||||| |||||        |||||||||||||||||| | ||||||||    
T  19661554 aattcctttcatgtttagaagttcttctgattctgtttttttttttaatgaaatttaactacacaaaaaaattatgttttattttactaggagcctattt 19661653  T
Q  114 taaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||  || |||||||||||||    
T  19661654 taaaaagagagcagagcctcctatttcac 19661682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 23426055 - 23425995
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctaca 76  Q
    |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||    
T  23426055 aattcctttcatgtttagaagttcttctgattctaattttttttaataaaatttagctaca 23425995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 16887872 - 16887746
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||| ||||||| || |||||||| ||||||||| |||| || ||||||||||        ||| ||||||||||| || ||||||||||||    
T  16887872 aattcctttcatatttagaagttattctgattatgattttttttaatgaagtttagctacacagaaaaattacgttttattttattaagggcctatttta 16887773  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||| ||||||| | |||| ||||||||    
T  16887772 aaaggagagtcaagcctcatatttcac 16887746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 41038424 - 41038553
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataa--aatttagctacatnnnnnnn-ttatgttttattttactatgggcctatt 112  Q
    |||||||||||||||||||| ||||||||||| ||||||||| |  |||  ||||||||||||         |||  ||||||||||||| |||||||||    
T  41038424 aattcctttcatgtttagaagttcttctgattttgatttttttttttaatgaatttagctacacaaaaaaaattacattttattttactaggggcctatt 41038523  T
Q  113 ttaaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||| ||| |||||||||||||    
T  41038524 ttaaaaagagagccgagcctcctatttcac 41038553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 23256768 - 23256898
Alignment:
Q  16 aattcctttcatgtttagaactt-cttctgattctgattttttat----aataaaatttagctacatnnnnnnnttatgttttattttactatgggccta 110  Q
    |||||||||||||||| ||| || ||||||||||||||||||| |    ||| ||||||| |||||        ||| |||||||||||||| |||||||    
T  23256768 aattcctttcatgtttggaagtttcttctgattctgattttttttttttaatgaaatttaactacacaaaaaaattacgttttattttacta-gggccta 23256866  T
Q  111 ttttaaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||||| ||| |||||||||||||    
T  23256867 ttttaaaaagagagccgagcctcctatttcac 23256898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 29221510 - 29221386
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |||| || |||||  |||        | | ||||||||||||||  |||||||||||    
T  29221510 aattcctttcatatttagaagttcttctgattctgattttttttaatgaagtttaga-acacaaaaaaat-acgttttattttactagaggcctatttta 29221413  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||| ||| |||||||||||||    
T  29221412 aaaagagagccgagcctcctatttcac 29221386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 28463477 - 28463436
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatttttt 57  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  28463477 aattcctttgatgtttagaacttcttctgattctgatttttt 28463436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 26328912 - 26328796
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgg-gcctattttaaaaag 120  Q
    |||||||||||||| ||||||| ||||||||||||| |||| || ||||||||||        |||||||||  |||  || || |||||||||||||||    
T  26328912 tttcatgtttagaaattcttctaattctgatttttt-taatgaagtttagctaca-caaaaaattatgtttttattt--tagggagcctattttaaaaag 26328817  T
Q  121 agagtcgaacctcctatttca 141  Q
    |||||||||||||||||||||    
T  26328816 agagtcgaacctcctatttca 26328796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 5545592 - 5545625
Alignment:
Q  106 gcctattttaaaaagagagtcgaacctcctattt 139  Q
    ||||||||||||||||||||||| ||||||||||    
T  5545592 gcctattttaaaaagagagtcgagcctcctattt 5545625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 24449281 - 24449317
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    ||||||||||| || ||||||||||||||||||||||    
T  24449281 tttcatgtttaaaagttcttctgattctgatttttta 24449317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 4856168 - 4856297
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||        ||| |||||||||||||| ||||||||||||    
T  4856168 aattcctttcatgtttagaacttcttctgattctgattttttttaatgaaatttagctacacaaaaaaattacgttttattttactaggggcctatttta 4856267  T
Q  116 aaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||||||| ||||||||||||||||    
T  4856268 aaaagagagtcgagcctcctatttcacggg 4856297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 45619151 - 45619280
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||        ||| |||||||||||||| ||||||||||||    
T  45619151 aattcctttcatgtttagaacttcttctgattctgattttttttaatgaaatttagcttcacaaacaaattacgttttattttactaagggcctatttta 45619250  T
Q  116 aaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||||||| |||| |||||||||||    
T  45619251 aaaagagagtcgagcctcgtatttcacggg 45619280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 7993807 - 7993932
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| |||||        |||||||||||||||||| | ||||||||||    
T  7993807 aattcctttcatgtttagaagttcttctgattctgattttttttaatgaaatttaactacacaaaaaaattatgttttattttactaggtgcctatttta 7993906  T
Q  116 aaaagagagtcgaacctcctatttca 141  Q
    ||||||||| ||||||||||||||||    
T  7993907 aaaagagagccgaacctcctatttca 7993932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 26151636 - 26151507
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||        ||| |||||||||||||| ||||||||||||    
T  26151636 aattactttcatgtttagaacttcttctgattctgattttttttaatgaaatttagctacacaaaaaaattacgttttattttactaggggcctatttta 26151537  T
Q  116 aaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||| | | ||||||||||||||||    
T  26151536 aaaagagagccaagcctcctatttcacggg 26151507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 13020598 - 13020719
Alignment:
Q  17 attcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattttaa 116  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||| |||        ||| |||||||||||||| |||||||||||||    
T  13020598 attcctttcatgtttagaacttcttctaattctgattttttttaatgaaatttagcaacacaaaaaaattacgttttattttactaggggcctattttaa 13020697  T
Q  117 aaagagagtcgaacctcctatt 138  Q
    |||||||| |||||||||||||    
T  13020698 aaagagagccgaacctcctatt 13020719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 42759645 - 42759516
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctaca-tnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||         ||| ||||||||||||||||| ||||||||    
T  42759645 aattcctttcatgtttagaacttcttctgattctgattttttttaatgaaatttaactacacaaaaaaaattacgttttattttactatggacctatttt 42759546  T
Q  115 aaaaagagagtcgaacctcctatttcacgg 144  Q
    |||||||| |  || |||||||||||||||    
T  42759545 aaaaagagggctgagcctcctatttcacgg 42759516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 18676199 - 18676059
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatt-ttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||||||| ||||||||||||||||| |||| |||| |||||||||||||        ||| |||||||||||||| |||||||||||    
T  18676199 aattcctttcatgtttagaagttcttctgattctgatttttttttaatgaaatttagctacacaaaaaaattacgttttattttactaggggcctatttt 18676100  T
Q  115 aaaaagagagtcgaacctcctatttcac-gggacaaccctg 154  Q
    | ||||||||  || |||| |||||||| ||||| ||||||    
T  18676099 ataaagagagctgagcctcttatttcacagggacgaccctg 18676059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 25222498 - 25222629
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctga--ttttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattt 113  Q
    ||||||||||||||||||||||| |||||||| |||  |||||| ||||||||||||||||||        ||| |||||||||||||| ||||||| ||    
T  25222498 aattcctttcatgtttagaactttttctgattttgattttttttttaataaaatttagctacacaaaaaaattacgttttattttactaggggcctactt 25222597  T
Q  114 taaaaagagagtcgaacctcctatttcacggg 145  Q
    |||||| |||| | ||||| ||||||||||||    
T  25222598 taaaaaaagagccaaaccttctatttcacggg 25222629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 6530834 - 6530963
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat---aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatt 112  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |   ||| |||||||||||||        ||| ||||||||||| || | |||||||    
T  6530834 aattcctttcatgtttagaagttcttttgattctgatttttttttttaatgaaatttagctacacaaagaaattacgttttattttaataggagcctatt 6530933  T
Q  113 ttaaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||| ||| |||||||||||||    
T  6530934 ttaaaaagagagccgagcctcctatttcac 6530963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 12269600 - 12269727
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatttt-ttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||||||| ||||||||||||||||||| || |||| |||||||||||||        ||| ||||||||||| || |  ||||||||    
T  12269600 aattcctttcatgtttagaagttcttctgattctgattttcttttaatgaaatttagctacacaaaaaaattacgttttattttaataggaacctatttt 12269699  T
Q  115 aaaaagagagtcgaacctcctatttcac 142  Q
    ||||||||||||||  || |||||||||    
T  12269700 aaaaagagagtcgagtctactatttcac 12269727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 2063981 - 2064106
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||| ||| |||||||  |||||||||||||||||||| |||| || ||||||||||        ||| |||||||||||||| || |||||||||    
T  2063981 aattccttccatatttagaaggtcttctgattctgatttttt-taatgaagtttagctacacaaagatattacgttttattttactacggacctatttta 2064079  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    |||||||||| || |||||||||||||    
T  2064080 aaaagagagttgagcctcctatttcac 2064106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 36481570 - 36481696
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| | |||        ||| ||||||||||||||   | ||||||||    
T  36481570 aattcctttcatgtttagaagttcttctgattctgattttttttaatgaaatttaaccacacaaaaaaattacgttttattttactagaagactatttta 36481669  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||| | |||||||||| ||||    
T  36481670 aaaagagagccaaacctcctatgtcac 36481696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 41096425 - 41096302
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| ||||||| ||| || |||||| |||| ||||||| |||||        ||| |||||||||||||| ||| ||||||||    
T  41096425 aattcctttcatgtttagaagttcttcttattatgttttttt-taatgaaatttaactaca--caaaaattacgttttattttactaggggtctatttta 41096329  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||| ||| |||||||||||||    
T  41096328 aaaagagagccgagcctcctatttcac 41096302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 42411447 - 42411319
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat----aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctat 111  Q
    |||| |||||||||||| || ||||||||||||||||||||| |    ||| ||||| || ||||        |||||||||||||||||||| ||||||    
T  42411447 aatttctttcatgtttaaaagttcttctgattctgattttttttttttaatgaaattaagttacacaaaaaaattatgttttattttactatgagcctat 42411348  T
Q  112 tttaaaaagagagtcgaacctcctatttcac 142  Q
    |||||||  ||||||||||||||||||||||    
T  42411347 tttaaaa--agagtcgaacctcctatttcac 42411319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 45042565 - 45042692
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctga-ttttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||| ||||||| |||||| |||||||| |||||| |||| || ||||||||||        ||| |||||||||||||||||| |||||||    
T  45042565 aattcctttcatatttagaagttcttccgattctgatttttttttaatgaagtttagctacacaaaaaaattacgttttattttactatgggtctatttt 45042664  T
Q  115 aaaaagagagtcgaacctcctatttcac 142  Q
    |||||| ||| |||  ||| ||||||||    
T  45042665 aaaaagtgagccgattctcatatttcac 45042692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 1226149 - 1226031
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnn-ttatgtttt-attttactatgggcctattttaaaaa 119  Q
    |||||||||||||| ||||||| ||||||||||||| |||| || ||||||||||         ||||||||| ||||||  | ||||||||||||||||    
T  1226149 tttcatgtttagaagttcttctaattctgatttttt-taatgaagtttagctacacaaaaaaaattatgtttttatttta--aggggcctattttaaaaa 1226053  T
Q  120 gagagtcgaacctcctatttca 141  Q
    ||||||||| ||||||||||||    
T  1226052 gagagtcgagcctcctatttca 1226031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 19367240 - 19367187
Alignment:
Q  89 gttttattttactatgggcctattttaaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||||| | ||||||||||||||||||||| | |||||||||||||    
T  19367240 gttttattttactaggagcctattttaaaaagagagtcaagcctcctatttcac 19367187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 34061681 - 34061628
Alignment:
Q  89 gttttattttactatgggcctattttaaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||||| |||| ||||||||||||||||  || |||||||||||||    
T  34061681 gttttattttactaggggcttattttaaaaagagagctgagcctcctatttcac 34061628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 17117527 - 17117491
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    ||||||||||||||  |||||||||||||||||||||    
T  17117527 tttcatgtttagaagctcttctgattctgatttttta 17117491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 18172824 - 18172788
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    ||||||||||||||  |||||||||||||||||||||    
T  18172824 tttcatgtttagaaactcttctgattctgatttttta 18172788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 24252796 - 24252927
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||        |||||||||||| ||| ||||||||||||||    
T  24252796 aattcctttcatgtttagaacttcttctgattctaattttttttaatgaaatttagctacacaaaaaaattatgttttattatacaatgggcctatttta 24252895  T
Q  116 aaaagagagtcgaacctcctatttcacgggac 147  Q
    ||||||||| ||||||||||||||||||||||    
T  24252896 aaaagagagacgaacctcctatttcacgggac 24252927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 8364348 - 8364470
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||| |||        ||| |||||||||||||||||||||||||||    
T  8364348 aattcctttcatgtttagaacttcttctgattctaattttttttaatgaaatttagcaacacaaaaaaattacgttttattttactatgggcctatttta 8364447  T
Q  116 aaaagagagtcgaacctcctatt 138  Q
    ||||||||||||| |||||||||    
T  8364448 aaaagagagtcgagcctcctatt 8364470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 52655011 - 52654885
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| ||||||||||||| ||||||| |||| ||||||| |||||        ||| |||||||||||||| || |||||||||    
T  52655011 aattcctttcatgtttagaagttcttctgattctaattttttttaatgaaatttaactacacaaaaaaattacgttttattttactagggacctatttta 52654912  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    |||||||||| || |||||||||||||    
T  52654911 aaaagagagttgagcctcctatttcac 52654885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 6715614 - 6715743
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||| |||||||||| ||||||||| |||||||||||| |||| |||||||||||||        ||| |||||||||||||| ||  ||||||||    
T  6715614 aattccttccatgtttagatcttcttctgcttctgattttttttaatgaaatttagctacacaaaaaaattacgttttattttactaaggatctatttta 6715713  T
Q  116 aaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||| ||| ||||||||||||||||    
T  6715714 aaaagagagccgagcctcctatttcacggg 6715743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 27110761 - 27110636
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattt-tttataataaaatttagctaca-tnnnnnnnttatgttttattttactatgggcctattt 113  Q
    |||||||||||||||||||||||||| |||||||||||| ||| |||| |||||||||||||         ||| |||||||||||||| ||| ||||||    
T  27110761 aattcctttcatgtttagaacttcttatgattctgatttatttttaatgaaatttagctacacaaaaaaaattacgttttattttactacgggtctattt 27110662  T
Q  114 taaaaagagagtcgaacctcctattt 139  Q
    ||||||||||||||| ||||||||||    
T  27110661 taaaaagagagtcgagcctcctattt 27110636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 28132625 - 28132497
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnn--ttatgttttattttactatgggcctattt 113  Q
    |||||||||||||||||||| ||||||||||| |||||| || |||| |||||||||||||          |||| ||||||||||||| ||||||||||    
T  28132625 aattcctttcatgtttagaagttcttctgattttgatttcttttaatgaaatttagctacacaaaaaaaaattatattttattttactaggggcctattt 28132526  T
Q  114 taaaaagagagtcgaacctcctatttcac 142  Q
    ||||||||||| ||| |||||||||||||    
T  28132525 taaaaagagagccgagcctcctatttcac 28132497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 25598971 - 25598848
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||| ||||||||||||||| ||||||||||||||||||||| |||| || ||||||||||        ||| ||||||||||||||  | |||||||||    
T  25598971 aatttctttcatgtttagaagttcttctgattctgattttttttaatgaagtttagctacacaaaaaaattacgttttattttactaaagacctatttta 25598872  T
Q  116 aaaagagagtcgaacctcctattt 139  Q
    ||||||||| ||| ||||||||||    
T  25598871 aaaagagagccgagcctcctattt 25598848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 27729658 - 27729533
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| ||||||||||| | ||||||| |||| |||||||||||||        |||  ||||||||||||| || |||||||||    
T  27729658 aattcctttcatgtttagaagttcttctgattttaattttttttaatgaaatttagctaca-caaaaaattacattttattttactagggacctatttta 27729560  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    |||||| || |||||||||||||||||    
T  27729559 aaaagacagccgaacctcctatttcac 27729533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 21784672 - 21784544
Alignment:
Q  16 aattcctttcatgttta----gaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctat 111  Q
    |||||||||||||||||    ||| ||||| ||||||||||||||| |||| ||||||| |||||        ||| ||||||||||||||||  |||||    
T  21784672 aattcctttcatgtttaattagaagttcttttgattctgattttttttaatgaaatttaactacacaaaaaaattacgttttattttactatga-cctat 21784574  T
Q  112 tttaaaaagagagtcgaacctcctatttca 141  Q
    ||||||||||||||||||||||||||||||    
T  21784573 tttaaaaagagagtcgaacctcctatttca 21784544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 51939444 - 51939317
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatt-ttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||||||| ||||||| ||||||||| |||| |||| |||||||||||||        ||| ||| ||||||| || | |||||||||    
T  51939444 aattcctttcatgtttagaagttcttctcattctgatttttttttaatgaaatttagctacacaaaaaaattacgttatattttaataggagcctatttt 51939345  T
Q  115 aaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||||| ||| |||||||||    
T  51939344 aaaaagagagtcgagcctactatttcac 51939317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 23067613 - 23067492
Alignment:
Q  17 attcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattttaa 116  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| | |||        |||  |||||||||||||  | | ||||||||    
T  23067613 attcctttcatgtttagaacttcttctgattttgattttttttaatgaaatttaacaacacaaaaaaattacattttattttactagagacatattttaa 23067514  T
Q  117 aaagagagtcgaacctcctatt 138  Q
    |||||||||||| |||||||||    
T  23067513 aaagagagtcgagcctcctatt 23067492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 23164461 - 23164329
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat-aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    ||||| |||||| ||||||| ||||||||||||| ||||||| | ||| |||||||||||||        ||||||||||||||||||  ||||||||||    
T  23164461 aattcttttcatatttagaagttcttctgattctaatttttttttaatgaaatttagctacacaaaaaaattatgttttattttactagaggcctatttt 23164362  T
Q  115 aaaaagagagtcgaacctcctatttcacgggac 147  Q
    ||||||||||  |  ||||||||||||| ||||    
T  23164361 aaaaagagagctgtgcctcctatttcacaggac 23164329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 13401635 - 13401756
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| ||||||||||| | ||||||| |||| || |||| |||||        |||  ||||||||||||| || |||||||||    
T  13401635 aattcctttcatgtttagaagttcttctgatt-tcatttttt-taatgaagtttaactacacaaaaaagttacattttattttactaaggacctatttta 13401732  T
Q  116 aaaagagagtcgaacctcctattt 139  Q
    ||||||||||||| ||||||||||    
T  13401733 aaaagagagtcgagcctcctattt 13401756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 20762225 - 20762355
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactat----gggcctat 111  Q
    ||||| |||||| ||||||| |||||| |||||||||||||| |||| || |||| |||||        |||  ||||||||||||||    || |||||    
T  20762225 aattcatttcatatttagaagttcttccgattctgattttttttaatgaagtttaactacacaaaaaaattacattttattttactatatatggacctat 20762324  T
Q  112 tttaaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||| || |||||||||||||||||    
T  20762325 tttaaaaagaaagccgaacctcctatttcac 20762355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 46791586 - 46791459
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaa---atttagctacatnnnnnnnttatgttttattttactatgggcctatt 112  Q
    |||||||||||||||||||| |||||| ||||||| |||||| |  | ||   |||||| |||||       ||| |||||||||||||| |||||||||    
T  46791586 aattcctttcatgtttagaagttcttcagattctggttttttttttttaatgaatttagatacataaaaaaattacgttttattttactaggggcctatt 46791487  T
Q  113 ttaaaaagagagtcgaacctcctatttcac 142  Q
    ||  |||||||| ||| |||||||||||||    
T  46791486 tt--aaagagagccgagcctcctatttcac 46791459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 29387637 - 29387511
Alignment:
Q  21 ctttcatgtttagaacttcttctgattctgattttttat-----aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||| || ||||||||||||||||||||| |     ||| ||||||| |||||        |||| |||||||||||||  |  ||||||||    
T  29387637 ctttcatgtttataagttcttctgattctgatttttttttttttaatgaaatttaactacacaaaaaaattatattttattttactaaagatctatttta 29387538  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||||||| |||| ||||||||    
T  29387537 aaaagagagtcgagcctcatatttcac 29387511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 18408366 - 18408399
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattct 49  Q
    |||||||||||||||||||| |||||||||||||    
T  18408366 aattcctttcatgtttagaagttcttctgattct 18408399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 40151929 - 40151896
Alignment:
Q  108 ctattttaaaaagagagtcgaacctcctatttca 141  Q
    ||||||||||||||||||||| ||||||||||||    
T  40151929 ctattttaaaaagagagtcgagcctcctatttca 40151896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 15998527 - 15998591
Alignment:
Q  90 ttttattttactatgggcctattttaaaaagagagtcgaacctcctatttcacgggacaaccctg 154  Q
    ||||||||||||  | |||||||||| |||||||||||| | ||||||||||  |||| ||||||    
T  15998527 ttttattttactgagagcctattttagaaagagagtcgatcatcctatttcataggacgaccctg 15998591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 21596516 - 21596552
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  21596516 tttcatgtttagaagttcttttgattctgatttttta 21596552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 27303367 - 27303403
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    ||||||||||| || ||||||||||||||||||||||    
T  27303367 tttcatgtttaaaagttcttctgattctgatttttta 27303403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 26377663 - 26377535
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||        ||||||| |||||||||| ||||||||||||    
T  26377663 aattcctttcatgtttagaacttcttctgattctgatttttt-taatgaaattgagctacacaaaaaaattatgttctattttactaggggcctatttta 26377565  T
Q  116 aaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||||||| ||||||||||||||||    
T  26377564 aaaagagagtcgagcctcctatttcacggg 26377535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 26312163 - 26312291
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||        ||| |||||||||||||||  ||||||||||    
T  26312163 aattcctttcatgtttagaacttcttctgattctgatttttt-taatgaaatttagctacacaaaaaaattacgttttattttactattagcctatttta 26312261  T
Q  116 aaaagagagtcgaacctcctatttcacggg 145  Q
    ||| ||||||||| ||||||||||||||||    
T  26312262 aaatgagagtcgagcctcctatttcacggg 26312291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 37046956 - 37047087
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat--aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattt 113  Q
    |||| ||||||||||||||||||||||| ||||||||||||| |  |||||||||||||||||        ||| |||||||||||||| ||||||||||    
T  37046956 aatttctttcatgtttagaacttcttctaattctgattttttttttaataaaatttagctacacaaaaaaattacgttttattttactaagggcctattt 37047055  T
Q  114 taaaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||||| ||||||||||||||||||||    
T  37047056 taaaaagagagccgaacctcctatttcacggg 37047087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 13474805 - 13474935
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat-aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||| ||||||||||||||| ||||||||||||| | |||||||||||||||||        ||| ||||||||||||||  ||||||||||    
T  13474805 aattcctttcatttttagaacttcttcttattctgatttttttttaataaaatttagctacacaaaaaaattacgttttattttactagaggcctatttt 13474904  T
Q  115 aaaaagagagtcgaacctcctatttcacggg 145  Q
    |||||||||||||| ||||||||||||||||    
T  13474905 aaaaagagagtcgagcctcctatttcacggg 13474935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 12661483 - 12661609
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||        ||| ||||||||||||||  | |||||||||    
T  12661483 aattcctttcatgtttagaagttcttctgattctgattttttttaataaaatttagctacacaaaaaaattacgttttattttactaaagacctatttta 12661582  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||| ||| ||||| |||||||    
T  12661583 aaaagagagccgagcctcccatttcac 12661609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 36718519 - 36718394
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatt--ttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattt 113  Q
    ||||||||||||||||||||| ||||| ||||||||||  |||| ||||||||||||||||||        ||| |||||||||||||||||  ||||||    
T  36718519 aattcctttcatgtttagaacatcttccgattctgattttttttttaataaaatttagctacacaaaaaaattacgttttattttactatggatctattt 36718420  T
Q  114 taaaaagagagtcgaacctcctattt 139  Q
    |||||||||||| || ||||||||||    
T  36718419 taaaaagagagttgagcctcctattt 36718394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 13656385 - 13656516
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat--aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattt 113  Q
    |||||||||||||||||||||||||||| ||||| ||||||| |  ||| ||||||||||| |        ||| ||||||||||||||||  |||||||    
T  13656385 aattcctttcatgtttagaacttcttcttattctaattttttttttaatgaaatttagctatacaaaaaaattacgttttattttactatga-cctattt 13656483  T
Q  114 taaaaagagagtcgaacctcctatttcacggga 146  Q
    ||||||||||| |||||||||||||||||||||    
T  13656484 taaaaagagagccgaacctcctatttcacggga 13656516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 13424040 - 13424166
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    ||||||||||||||||| || ||||||||||||||||||||| |||| ||||||| |||||        |||  |||||| ||||||  | |||||||||    
T  13424040 aattcctttcatgtttaaaagttcttctgattctgattttttttaatgaaatttaactacacaaaaaaattagtttttatcttactagagacctatttta 13424139  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||| ||| |||||||||||||    
T  13424140 aaaagagagccgagcctcctatttcac 13424166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 931618 - 931669
Alignment:
Q  90 ttttattttactatgggcctattttaaaaagagagtcgaacctcctatttca 141  Q
    |||| ||||||||  || ||||||||||||||||| ||||||||||||||||    
T  931618 ttttgttttactagaggtctattttaaaaagagagccgaacctcctatttca 931669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 19099203 - 19099145
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagcta 74  Q
    ||||| |||||||||||||| ||||||||||||||| |||||  ||| || ||||||||    
T  19099203 aattcttttcatgtttagaagttcttctgattctgaattttttcaatgaagtttagcta 19099145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 3349611 - 3349575
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    ||||||||||||||  |||||||||||||||||||||    
T  3349611 tttcatgtttagaaactcttctgattctgatttttta 3349575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 4177382 - 4177418
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  4177382 tttcatgtttagaagttcttctgattatgatttttta 4177418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 8379257 - 8379208
Alignment:
Q  90 ttttattttactatgggcctattttaaaaagagagtcgaacctcctatttca 141  Q
    |||||||||||||  | |||||||||||||||||| |||| |||||||||||    
T  8379257 ttttattttacta--gacctattttaaaaagagagccgaatctcctatttca 8379208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 10033733 - 10033769
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    ||||||||||| || ||||||||||||||||||||||    
T  10033733 tttcatgtttaaaagttcttctgattctgatttttta 10033769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 27351527 - 27351567
Alignment:
Q  18 ttcctttcatgtttagaacttcttctgattctgatttttta 58  Q
    |||||||||||||||||| ||||||||||||  ||||||||    
T  27351527 ttcctttcatgtttagaagttcttctgattcgaatttttta 27351567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 17487168 - 17487038
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat-aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||||||||||||||||||||||| ||||| | ||| |||||||||||||        ||| |||||||||||||| |||||||||||    
T  17487168 aattcctttcatgtttagaacttcttctgattctgagtttttttcaatgaaatttagctacacaaaaaaattacgttttattttactaagggcctatttt 17487069  T
Q  115 aaaaagagagtcgaacctcctatttcacggg 145  Q
    |||||||||||||| ||||||||||||||||    
T  17487068 aaaaagagagtcgagcctcctatttcacggg 17487038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 6150897 - 6151024
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat-aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||||||| |||||||||||||  |||||| | ||| |||||||||||||        |||||||||||||||||| |||| ||||||    
T  6150897 aattcctttcatgtttagaagttcttctgattctattttttttttaatgaaatttagctacacaaaaaaattatgttttattttactaagggcttatttt 6150996  T
Q  115 aaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||||| |||||||||||||    
T  6150997 aaaaagagagtcgagcctcctatttcac 6151024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 48722255 - 48722128
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat-aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||| ||||||||||||||| ||||||||||||||||||||| | ||| ||||||| |||||        ||| ||||||||||||||||| ||||||||    
T  48722255 aatttctttcatgtttagaagttcttctgattctgatttttttttaatgaaatttaactacacaacaaaattacgttttattttactatggacctatttt 48722156  T
Q  115 aaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||||| |||||||||||||    
T  48722155 aaaaagagagtcgagcctcctatttcac 48722128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 30004796 - 30004673
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| ||||||||||||||||||  |  ||| || ||||||||||        ||| |||||||||||||||||||||||||||    
T  30004796 aattcctttcatgtttagaagttcttctgattctgatttaattcaatgaagtttagctacacaaaaaaattacgttttattttactatgggcctatttta 30004697  T
Q  116 aaaagagagtcgaacctcctattt 139  Q
    ||||||||| ||| ||||||||||    
T  30004696 aaaagagagccgagcctcctattt 30004673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 20905174 - 20905035
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||| ||||||| ||||||| |||||| |||||| |||| || ||||||||||        ||| ||||||| |||||| || |||||||||    
T  20905174 aattcctttcatatttagaagttcttcttattctggttttttttaatgaagtttagctacacaaaaaaattacgttttatcttactagggacctatttta 20905075  T
Q  116 aaaagagagtcgaacctcctatttcac-gggacaaccctg 154  Q
    ||||||||||||| ||||||||||||| ||||| ||||||    
T  20905074 aaaagagagtcgagcctcctatttcacagggacgaccctg 20905035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 51109990 - 51109861
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat--aataaaatttagctacatnnnnnnn-ttatgttttattttactatgggcctatt 112  Q
    |||||||||||||||||||| ||||||| ||||||||||||| |  ||| |||||||||||||         ||| |||||||||||||| |||||||||    
T  51109990 aattcctttcatgtttagaaattcttctaattctgattttttttttaatgaaatttagctacaaaaaaaaaattacgttttattttactaggggcctatt 51109891  T
Q  113 ttaaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||| ||| |||||||||||||    
T  51109890 ttaaaaagagagccgagcctcctatttcac 51109861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 30899835 - 30899979
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctga-ttttttataataaaatttagctacatnnnnnnnttatgttttattttac----tatgggccta 110  Q
    |||||||||||||||||||| ||||||||||||||| |||||| |||| ||||||| ||| |        ||| ||||||||||||    || ||| |||    
T  30899835 aattcctttcatgtttagaagttcttctgattctgatttttttttaatgaaatttaactagacaaaaaaattacgttttattttactaattaagggtcta 30899934  T
Q  111 ttttaaaaagagagtcgaacctcctatttcac-gggacaaccctg 154  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||    
T  30899935 ttttaaaaagagagccgaacctcctatttcacagggacaaccctg 30899979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 28885560 - 28885434
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatt-ttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||||||| ||||||| ||||||||| |||| |||| ||||||| |||||        ||| |||||||||||||| |   |||||||    
T  28885560 aattcctttcatgtttagaagttcttctaattctgatttttttttaatgaaatttaactacacaaaaaaattacgttttattttactaggtatctatttt 28885461  T
Q  115 aaaaagagagtcgaacctcctatttca 141  Q
    |||||||||||||| ||||||||||||    
T  28885460 aaaaagagagtcgagcctcctatttca 28885434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 52055727 - 52055852
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    ||||||||||||| |||||| || |||||||||||||||||| |||| || ||||||||||        ||| ||||||||||||||||  | ||||||     
T  52055727 aattcctttcatgcttagaagtttttctgattctgattttttttaatgaagtttagctacacaaaaaaattacgttttattttactatgaacttatttt- 52055825  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||||||| |||||||||||||    
T  52055826 aaaagagagtcgatcctcctatttcac 52055852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 14084588 - 14084463
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatt-ttttataataaaatttagctac-atnnnnnnnttatgttttattttactatgggcctattt 113  Q
    |||||||||||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |        ||| ||||||||||| ||| || ||||||    
T  14084588 aattcctttcatgtttagaagttcttctgattctgatttttttttaatgaaatttagctacaacaaaaaaattacgttttattttattataggtctattt 14084489  T
Q  114 taaaaagagagtcgaacctcctattt 139  Q
    ||||||||||| ||| ||||||||||    
T  14084488 taaaaagagagccgagcctcctattt 14084463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 29207982 - 29207855
Alignment:
Q  21 ctttcatgtttagaacttcttctgattctgattttttat------aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    ||||||| ||||||| ||||||||||||||||||||| |      |||||| ||||||||||        ||| ||||||||||||||||| ||||||||    
T  29207982 ctttcatatttagaagttcttctgattctgattttttttttttgtaataaagtttagctacacaaaaaaattacgttttattttactatggacctatttt 29207883  T
Q  115 aaaaagagagtcgaacctcctatttcac 142  Q
    | |||||||||||| |||||||||||||    
T  29207882 agaaagagagtcgagcctcctatttcac 29207855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 20470787 - 20470918
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctaca--tnnnnnnnttatgttttattttactatgggcct-att 112  Q
    |||||||||||||||||||||||||||| |||||| |||||| |||| ||||||||||| |          ||| |||||||||||||| ||||||  ||    
T  20470787 aattcctttcatgtttagaacttcttctaattctggtttttt-taatgaaatttagctagaacaaaaaaaattacgttttattttactaggggcctgttt 20470885  T
Q  113 ttaaaaagagagtcgaacctcctatttcacggg 145  Q
    |||||||||||| ||| ||||||||||||||||    
T  20470886 ttaaaaagagagccgagcctcctatttcacggg 20470918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 50552670 - 50552796
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat---aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatt 112  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |   ||| |||||||||||||        ||| |||||||||||||| |||  ||||    
T  50552670 aattcctttcatgtttagaagttcttttgattctgatttttttttttaatgaaatttagctacacaaaaaaattaagttttattttactaagggtttatt 50552769  T
Q  113 ttaaaaagagagtcgaacctcctattt 139  Q
    ||||||||||||  || ||||||||||    
T  50552770 ttaaaaagagagctgagcctcctattt 50552796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 52240425 - 52240365
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctaca 76  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |||| || ||||||||||    
T  52240425 aattcctttcatatttagaagttcttctgattctgattttttttaatgaagtttagctaca 52240365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 25930778 - 25930902
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatg-ttttattttactatgggcctatttt 114  Q
    ||||| |||||| |||||||  |||||||||||||||||||| |||| || ||||||||||        ||| | |||||||||| || |||||||||||    
T  25930778 aattcttttcatatttagaagctcttctgattctgattttttttaatgaagtttagctacacaaaaaaattacgtttttattttattaggggcctatttt 25930877  T
Q  115 aaaaagagagtcgaacctcctattt 139  Q
     ||||||||||||| | ||||||||    
T  25930878 caaaagagagtcgagcttcctattt 25930902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 183 - 311
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat--aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattt 113  Q
    |||||||||||||||| ||| ||||| ||||| ||||||||| |  ||| || ||||||||||        ||| |||||||||||||  | ||||||||    
T  183 aattcctttcatgtttggaagttcttttgattttgattttttttttaatgaagtttagctacacaaaaaaattacgttttattttactgggagcctattt 282  T
Q  114 taaaaagagagtcgaacctcctatttcac 142  Q
    ||||||||||  ||| |||||||||||||    
T  283 taaaaagagaaccgagcctcctatttcac 311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 10109899 - 10109961
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctga---ttttttataataaaatttagctac 75  Q
    |||||||||||||||||||| |||||||||||||||   |||||| |||| ||||||||||||    
T  10109899 aattcctttcatgtttagaagttcttctgattctgagttttttttttaatgaaatttagctac 10109961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 9777678 - 9777712
Alignment:
Q  107 cctattttaaaaagagagtcgaacctcctatttca 141  Q
    |||||||||||||||||||||||||||||||||||    
T  9777678 cctattttaaaaagagagtcgaacctcctatttca 9777712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 18127826 - 18127701
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||| |||| |||||||||| ||||| |||||||| |||||| |||| ||||||| |||||        ||   ||||||||||||| || ||||||||     
T  18127826 aatttctttaatgtttagaagttcttatgattctgtttttttttaatgaaatttaactaca-caaaaaattgcattttattttactaaggacctattttg 18127728  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||  |||||||||||||||||    
T  18127727 aaaagagaaccgaacctcctatttcac 18127701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 31369308 - 31369276
Alignment:
Q  109 tattttaaaaagagagtcgaacctcctatttca 141  Q
    |||||||||||||||||||||||||||||||||    
T  31369308 tattttaaaaagagagtcgaacctcctatttca 31369276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 139
Target Start/End: Complemental strand, 44836522 - 44836492
Alignment:
Q  109 tattttaaaaagagagtcgaacctcctattt 139  Q
    |||||||||||||||||||||||||||||||    
T  44836522 tattttaaaaagagagtcgaacctcctattt 44836492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 15441470 - 15441506
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  15441470 tttcatgtttagaagttcttctgattttgatttttta 15441506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 50371316 - 50371352
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  50371316 tttcatgtttagaagttcttatgattctgatttttta 50371352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 1237 - 1366
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||        ||| |||||||||||||| |  | |||||||    
T  1237 aattcctttcatgtttagaacttcttctgattctgattttttttaatgaaatttagctacacaaaaaaattacgttttattttactaggaacttatttta 1336  T
Q  116 aaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||| ||| ||||||||||||||||    
T  1337 aaaagagagccgagcctcctatttcacggg 1366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 17022 - 16895
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    ||||||||||||||||||||||||||| |||||||||||| | |||| |||||||||||||        ||| ||||||||||| || ||||||||||||    
T  17022 aattcctttcatgtttagaacttcttcagattctgattttatttaatgaaatttagctacacaaaaaaattacgttttattttattaggggcctatttta 16923  T
Q  116 aaaagagagtcgaacctcctatttcacg 143  Q
    ||||||||| ||| ||||||||||||||    
T  16922 aaaagagagccgagcctcctatttcacg 16895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 16885 - 17015
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctga-ttttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||||||||||||||||||||| | |||||| |||| |||||||||||||        ||| ||| |||||||||| |||||||||||    
T  16885 aattcctttcatgtttagaacttcttctgattctaatttttttttaatgaaatttagctacacaaaaaaattacgttatattttactaggggcctatttt 16984  T
Q  115 aaaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||||| || ||||||||||||||||    
T  16985 aaaaagagagttgagcctcctatttcacggg 17015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 22694 - 22588
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||        ||| ||||||||||||||||||| |||||||    
T  22694 aattcctttcatgtttagaagttcttctgattctgattttttttaataaaatttagctacacaaaaaaattacgttttattttactatgggcttatttta 22595  T
Q  116 aaaagag 122  Q
    |||||||    
T  22594 aaaagag 22588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 3445710 - 3445834
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||| ||||||| |||||        ||| |||||||||||||| ||||||||||||    
T  3445710 aattcttttcatgtttagaagttcttctgattctgattttttttaatgaaatttaactaca--caaaaattacgttttattttactaggggcctatttta 3445807  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||||||| |||||||||||||    
T  3445808 aaaagagagtcgagcctcctatttcac 3445834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 7858260 - 7858389
Alignment:
Q  17 attcctttcatgtttagaacttcttctgattctgattttttat-aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||  ||        ||| |||||||||||||| ||||||||||||    
T  7858260 attcctttcatgtttagaacttcttctgattctgatttttttttaatgaaatttagcagcacaaaaaaattacgttttattttactaggggcctatttta 7858359  T
Q  116 aaaagagagtcgaacctcctatttcacggg 145  Q
    ||||||||||||| ||||||||| ||||||    
T  7858360 aaaagagagtcgagcctcctattccacggg 7858389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 1004231 - 1004362
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat--aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattt 113  Q
    ||||||||||||||||| |||||||||||||||||||||||| |  ||| ||||||| ||||||       ||| |||||||||||||||||  ||||||    
T  1004231 aattcctttcatgtttaaaacttcttctgattctgattttttttttaatgaaatttaactacataaaaaaattacgttttattttactatggatctattt 1004330  T
Q  114 taaaaagagagtcgaacctcctatttcacggg 145  Q
    |||||| |||||||| ||||||||||||||||    
T  1004331 taaaaaaagagtcgagcctcctatttcacggg 1004362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 43926212 - 43926086
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||||||||||||||||||||||||  || | |||||||||||||        ||| ||||||||||||||  |||||||||||    
T  43926212 aattcctttcatgtttagaacttcttctgattctgattttt--tagtgaaatttagctacacaaaaaaattacgttttattttactaaaggcctatttta 43926115  T
Q  116 aaaagagagtcgaacctcctatttcacgg 144  Q
    ||||||||| ||| | |||||||||||||    
T  43926114 aaaagagagccgagcttcctatttcacgg 43926086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 18112300 - 18112425
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||| ||||||||||||||| ||||| || |||||||||||| |||| |||||||||||||        ||| |||||||||||||| || |||||||||    
T  18112300 aatttctttcatgtttagaagttcttatggttctgattttttttaatgaaatttagctacacaaaaaaattacgttttattttacta-ggacctatttta 18112398  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||||||| |||||||||||||||||    
T  18112399 aaaagagagccgaacctcctatttcac 18112425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 18420497 - 18420355
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat---aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatt 112  Q
    |||||||||||||||||||| || |||||||||||||||||| |   ||| |||||||||||||        ||| |||||||||||||| | | |||||    
T  18420497 aattcctttcatgtttagaagttattctgattctgatttttttttttaatgaaatttagctacacaaaaaaattacgttttattttactaggagactatt 18420398  T
Q  113 ttaaaaagagagtcgaacctcctatttcac-gggacaaccctg 154  Q
    |||||||||||| ||| ||||||||||||| ||||| ||||||    
T  18420397 ttaaaaagagagccgagcctcctatttcacagggacgaccctg 18420355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 13585474 - 13585607
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat---aataaaatttagctacatnnnnnnn----ttatgttttattttactatgggcc 108  Q
    |||||||||||||||||||| ||||||||||||||||||||| |   ||| |||||||||||||            |||  ||||||||||||| |||||    
T  13585474 aattcctttcatgtttagaagttcttctgattctgatttttttttttaatgaaatttagctacacaaaaaaaaaaattacattttattttactaggggcc 13585573  T
Q  109 tattttaaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||||||||||||| |||||||||||||    
T  13585574 tattttaaaaagagagtcgagcctcctatttcac 13585607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 3471774 - 3471899
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    ||||||||| |||||||||| ||||| ||||||||||||||| |||| || ||||||||||        ||| |||||| ||||||| | || |||||||    
T  3471774 aattcctttaatgtttagaagttcttatgattctgattttttttaatgaagtttagctacacaaaaaaattacgttttactttactaagagcttatttta 3471873  T
Q  116 aaaagagagtcgaacctcctatttca 141  Q
    ||||||||| ||| ||||||||||||    
T  3471874 aaaagagagccgagcctcctatttca 3471899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 44664495 - 44664349
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat---aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatt 112  Q
    ||||||||||||||| | ||| |||||| ||||||||||||| |   |||||||||||||||||        ||| |||||||||||||| || ||||||    
T  44664495 aattcctttcatgttcaaaacatcttcttattctgatttttttttttaataaaatttagctacacaaaaaaattacgttttattttactagggacctatt 44664396  T
Q  113 ttaaaaagagagtcgaacctcctatttcac-gggacaaccctgattt 158  Q
    |||||||||||| ||| || |||||||||| ||||||  ||||||||    
T  44664395 ttaaaaagagagccgagccacctatttcacagggacagtcctgattt 44664349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 42951684 - 42951557
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat-aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||| ||| ||||| ||||||||||||||| | ||| |||||||||||||        ||| ||||||||||||||    ||||||||    
T  42951684 aattcctttcatgtttggaagttcttatgattctgattttttttaaatgaaatttagctacacaaaaaaattacgttttattttactagtaacctatttt 42951585  T
Q  115 aaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||| ||| |||||||||||||    
T  42951584 aaaaagagagccgagcctcctatttcac 42951557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 43967959 - 43967846
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat---aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatt 112  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |   ||| |||||||||||||        ||| ||||||||||| || ||  |||||    
T  43967959 aattcctttcatatttagaagttcttctgattctgattttttttttaaatgaaatttagctacacaaaaaaattacgttttattttaatagggatctatt 43967860  T
Q  113 ttaaaaagagagtc 126  Q
    ||||||||||||||    
T  43967859 ttaaaaagagagtc 43967846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 27074722 - 27074775
Alignment:
Q  89 gttttattttactatgggcctattttaaaaagagagtcgaacctcctatttcac 142  Q
    ||||||||||||||||| ||||||||||||||| || ||| |||| ||||||||    
T  27074722 gttttattttactatggacctattttaaaaagatagccgagcctcatatttcac 27074775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 3574910 - 3574859
Alignment:
Q  90 ttttattttactatgggcctattttaaaaagagagtcgaacctcctatttca 141  Q
    ||||||||||||  || ||||||||||| |||||||||| ||||||||||||    
T  3574910 ttttattttactgaggacctattttaaatagagagtcgagcctcctatttca 3574859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 5869134 - 5869085
Alignment:
Q  90 ttttattttactatgggcctattttaaaaagagagtcgaacctcctattt 139  Q
    ||||||||||||| || ||||||||||||||| || || |||||||||||    
T  5869134 ttttattttactagggacctattttaaaaagaaagccggacctcctattt 5869085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 35875081 - 35875117
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    ||||||||||| || ||||||||||||||||||||||    
T  35875081 tttcatgtttaaaagttcttctgattctgatttttta 35875117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 39697820 - 39697784
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    ||||||||||||||  |||||||||||||||||||||    
T  39697820 tttcatgtttagaaactcttctgattctgatttttta 39697784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 42161011 - 42160885
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| || |||||||||||||||||| |||| ||||||| ||||||       ||| |||||||||||||| ||  ||||||||    
T  42161011 aattcctttcatgtttagaagttattctgattctgattttttttaatgaaatttaactacataaagatattacgttttattttactaaggatctatttta 42160912  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    |||||||||   |||||||||||||||    
T  42160911 aaaagagagcataacctcctatttcac 42160885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 18015469 - 18015361
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| ||||||| ||||||||||||| |||| |||||||||||||        ||| ||||||||||| || ||||||||||||    
T  18015469 aattcctttcatgtttagaagttcttctaattctgattttttttaatgaaatttagctacacaaaaaaattacgttttattttattaggggcctatttta 18015370  T
Q  116 aaaagagag 124  Q
    |||||||||    
T  18015369 aaaagagag 18015361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 33910239 - 33910366
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat-aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttt 114  Q
    |||||||||||||||||||| || |||| ||||||||||||| | ||| || ||||||||||        ||| |||||||||||||| |||||||||||    
T  33910239 aattcctttcatgtttagaagttattcttattctgatttttttttaatgaagtttagctacacaaaaatattacgttttattttactaggggcctatttt 33910338  T
Q  115 aaaaagagagtcgaacctcctatttcac 142  Q
    |||||||||| ||| |||||||||||||    
T  33910339 aaaaagagagccgagcctcctatttcac 33910366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 12251176 - 12251046
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatt---ttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatt 112  Q
    |||||||||||||||||||| |||||||||||||||||   |||| |||| |||||||||||||        ||| ||||||||||||||  ||||||||    
T  12251176 aattcctttcatgtttagaagttcttctgattctgatttttttttttaatgaaatttagctacacaaaaaaattacgttttattttactagaggcctatt 12251077  T
Q  113 tt-aaaaagagagtcgaacctcctatttcac 142  Q
    || ||||||| |||||| |||||||||||||    
T  12251076 ttaaaaaagatagtcgagcctcctatttcac 12251046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 44893918 - 44893788
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttat--aataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattt 113  Q
    ||||||||||||| ||| |||||||||||||| ||||||||| |  ||| ||||||| ||||||       ||| ||||||||||| || ||  ||||||    
T  44893918 aattcctttcatgcttacaacttcttctgattatgattttttttttaatgaaatttaactacataaaaaaattacgttttattttattaaggatctattt 44893819  T
Q  114 taaaaagagagtcgaacctcctatttcacgg 144  Q
    ||||||||||||||| |||||||||||||||    
T  44893818 taaaaagagagtcgagcctcctatttcacgg 44893788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 6379973 - 6379847
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||| ||||||| |||||  |||||||||||||| |||| || |||| |||||        ||| |||||||||||||||||||||||||||    
T  6379973 aattcctttcatatttagaagttctttcgattctgattttttttaatgaagtttaactacacaaaaaaattacgttttattttactatgggcctatttta 6379874  T
Q  116 aaaagagagtcgaacctcctatttcac 142  Q
    ||||| ||| ||| |||| ||||||||    
T  6379873 aaaagtgagccgagcctcatatttcac 6379847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 7636212 - 7636104
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctatttta 115  Q
    |||||||||||||||||||| || ||||||||||||||||||  ||| || ||||||||||        ||| |||||||| ||||| ||||||||||||    
T  7636212 aattcctttcatgtttagaagttgttctgattctgatttttttcaatgaagtttagctacacaaaaaaattacgttttattctactaggggcctatttta 7636113  T
Q  116 aaaagagag 124  Q
    |||||||||    
T  7636112 aaaagagag 7636104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 4100133 - 4100261
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgat--tttttataataaaatttag-ctacatnnnnnnnttatgttttattttactatgggcctatt 112  Q
    |||||||||||||||||||| ||||||||||||||||  ||||| |||| |||||| | |||||        ||| ||||||||||||||  |  |||||    
T  4100133 aattcctttcatgtttagaagttcttctgattctgattctttttttaatgaaattttgactacaaaaaaaaattacgttttattttactagagatctatt 4100232  T
Q  113 ttaaaaagagagtcgaacctcctatttca 141  Q
    |||||||||||| ||||||||||||||||    
T  4100233 ttaaaaagagagccgaacctcctatttca 4100261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 29730969 - 29730853
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattttaaaaaga 121  Q
    |||||||||||||| || |||||||| ||||||||||  || ||| |||||||||        |||| ||||||||||||  ||||||||||||||||||    
T  29730969 tttcatgtttagaagtttttctgattgtgatttttta--atgaaacttagctacaaaaaaaaattat-ttttattttactgggggcctattttaaaaaga 29730873  T
Q  122 gagtcgaacctcctatttca 141  Q
    ||||||| ||||||||||||    
T  29730872 gagtcgagcctcctatttca 29730853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 33419005 - 33418944
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatt-ttttataataaaatttagctaca 76  Q
    |||||| ||||||||||||||||||||||||||||||| |||| |||||||||||| |||||    
T  33419005 aattccattcatgtttagaacttcttctgattctgatttttttttaataaaatttaactaca 33418944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 29742043 - 29742094
Alignment:
Q  90 ttttattttactatgggcctattttaaaaagagagtcgaacctcctatttca 141  Q
    ||||||||||||  ||||||||||||||||||||||||| ||||||||||||    
T  29742043 ttttattttactgggggcctattttaaaaagagagtcgagcctcctatttca 29742094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 36796249 - 36796134
Alignment:
Q  27 tgtttagaacttcttctgattctgattttttataataaaatttagctacatnnnnnnnttatgttttattttactatgggcctattttaaaaagagagtc 126  Q
    ||||||||||||||||||||||||||||||| |||| | ||||| |||||        |||  ||||||||||||| ||  |||||||||||||||||      
T  36796249 tgtttagaacttcttctgattctgattttttttaatgatatttaactacacaaaaaaattacattttattttactagggatctattttaaaaagagagct 36796150  T
Q  127 gaacctcctatttcac 142  Q
    ||  ||||||||||||    
T  36796149 gagtctcctatttcac 36796134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 11672839 - 11672895
Alignment:
Q  89 gttttattttactatgggcctattttaaaaagagagtcgaacctcctatttcacggg 145  Q
    |||||||||||||| ||| ||||||||||||||||  ||||||||| ||||||||||    
T  11672839 gttttattttactaggggtctattttaaaaagagaaccgaacctccaatttcacggg 11672895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 44875974 - 44875923
Alignment:
Q  90 ttttattttactatgggcctattttaaaaagagagtcgaacctcctatttca 141  Q
    |||||||||| || || |||||||||||||||||||||| ||||||||||||    
T  44875974 ttttattttagtagggacctattttaaaaagagagtcgagcctcctatttca 44875923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 40841126 - 40841072
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgattttttataataaaatttagctaca 76  Q
    |||||||||||||| ||||||| ||||||||||||| |||||||  |||||||||    
T  40841126 tttcatgtttagaagttcttctaattctgattttttttaataaagcttagctaca 40841072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 773680 - 773644
Alignment:
Q  105 ggcctattttaaaaagagagtcgaacctcctatttca 141  Q
    ||||||||||||||||||||||||||||||| |||||    
T  773680 ggcctattttaaaaagagagtcgaacctcctgtttca 773644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 28590027 - 28589991
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    |||||||||||||| ||||||||||||||||||||||    
T  28590027 tttcatgtttagaaattcttctgattctgatttttta 28589991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 3799645 - 3799611
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgattttt 56  Q
    |||||||||||||| ||||||||||||||||||||    
T  3799645 tttcatgtttagaagttcttctgattctgattttt 3799611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 141
Target Start/End: Complemental strand, 40001509 - 40001475
Alignment:
Q  107 cctattttaaaaagagagtcgaacctcctatttca 141  Q
    ||||||||||| |||||||||||||||||||||||    
T  40001509 cctattttaaatagagagtcgaacctcctatttca 40001475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 46221591 - 46221550
Alignment:
Q  16 aattcctttcatgtttagaacttcttctgattctgatttttt 57  Q
    |||| ||||||||||||||| ||||||| |||||||||||||    
T  46221591 aatttctttcatgtttagaagttcttctaattctgatttttt 46221550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 773765 - 773729
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  773765 tttcatgtttagaagttcttctgattttgatttttta 773729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 26633545 - 26633581
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    |||||||||||||  ||||||||||||||||||||||    
T  26633545 tttcatgtttagacgttcttctgattctgatttttta 26633581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 30739307 - 30739343
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  30739307 tttcatgtatagaagttcttctgattctgatttttta 30739343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 36438233 - 36438197
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    ||||||||||| || ||||||||||||||||||||||    
T  36438233 tttcatgtttaaaagttcttctgattctgatttttta 36438197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 42312192 - 42312228
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  42312192 tttcatgtttagaagttcttctgattctaatttttta 42312228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 45990 - 45938
Alignment:
Q  90 ttttattttactatgggcctattttaaaaagagagtcgaacctcctatttcac 142  Q
    ||||||||||||| |||| |||||||||||||||||||| |||||||||||||    
T  45990 ttttattttactaggggcttattttaaaaagagagtcgagcctcctatttcac 45938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 99098 - 99134
Alignment:
Q  22 tttcatgtttagaacttcttctgattctgatttttta 58  Q
    |||||||||||||| ||||||||||||||||||||||    
T  99098 tttcatgtttagaagttcttctgattctgatttttta 99134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 99167 - 99218
Alignment:
Q  90 ttttattttactatgggcctattttaaaaagagagtcgaacctcctatttca 141  Q
    ||||||||||||  |||||||||||||||||||| | || ||||||||||||    
T  99167 ttttattttactgagggcctattttaaaaagagatttgagcctcctatttca 99218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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