View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1335_low_6 (Length: 531)
Name: NF1335_low_6
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1335_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 111 - 518
Target Start/End: Complemental strand, 46892833 - 46892426
Alignment:
| Q |
111 |
caatgtgaattccttacatgttattaaagaacaacaacagccaacaaagagtgacgatgataatgacatgaacgtcacgagtctttatccgtagtacgtt |
210 |
Q |
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| T |
46892833 |
caatgtgaatttcttacatgttattaaagaccaacaacagccaacaaagagtgacgatgataatgacatgaacgtcacgagtctttatccgtagtacgtt |
46892734 |
T |
|
| Q |
211 |
tcttgttcttagaattagcataactcttgagatgaaaatcaagaaaaagagccaaaagagaagcattaaaaacagcattgaaacaccaagccttcatccc |
310 |
Q |
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| T |
46892733 |
tcttgttcttagaattagcataactcttgagatgaaaatcaagaaaaagagccaaaagagaagcattaaaaacagcattgaaacaccaagccttcatccc |
46892634 |
T |
|
| Q |
311 |
agagcatccaccaccatcggatccgaagtgataataaagcatgagaccggagacggcgaagctgaacacgaactgaacaatctggcagtcggtaacgacg |
410 |
Q |
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| T |
46892633 |
acagcatccaccaccatcggatccgaagtgataataaagcatgagaccggagacggcgaagctgaacacgaactgaacaatctggcagtcggtaacgacg |
46892534 |
T |
|
| Q |
411 |
cgtttccaaggcggtcggataccaacggtggtgaggaagtagtaagagtacatgatgacgtggacggatgagttggtaagaagtgcaatagggaagagtg |
510 |
Q |
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| T |
46892533 |
cgtttccaaggcggtcggattccaacggtggtgaggaagtagtaagagtacatgatgacgtggacggatgagttggtaagaagtgcaatagggaagagtg |
46892434 |
T |
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| Q |
511 |
attgagaa |
518 |
Q |
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| T |
46892433 |
attgagaa |
46892426 |
T |
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