View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1335_low_64 (Length: 208)
Name: NF1335_low_64
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1335_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 44142035 - 44141899
Alignment:
| Q |
1 |
tcatatcttctcaacttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgcagatcgcattttctc----aacaaaacnnnnnnnnca |
96 |
Q |
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| T |
44142035 |
tcatatcttctcaacttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgcagatcacattttctcaaaaaaaaaaaaaaaaaaaaca |
44141936 |
T |
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| Q |
97 |
ttaatggttgtataagatataacctcaggctcctttg |
133 |
Q |
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| T |
44141935 |
ttaatggttgtataagatataacctcaggctcctttg |
44141899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 50062613 - 50062476
Alignment:
| Q |
1 |
tcatatcttctcaacttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgcagatcgcattttctc-----aacaaaacnnnnnnnnc |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||| | |
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| T |
50062613 |
tcatatcttctcaacttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgtagatcgcattttctcaaaaaaaaaaaaaaaaaaaaac |
50062514 |
T |
|
| Q |
96 |
attaatggttgtataagatataacctcaggctcctttg |
133 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
50062513 |
cttaatggttgtataagatataacctcaggctcctttg |
50062476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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