View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1335_low_8 (Length: 509)

Name: NF1335_low_8
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1335_low_8
NF1335_low_8
[»] chr2 (5 HSPs)
chr2 (1-471)||(2973851-2974342)
chr2 (310-438)||(14994434-14994562)
chr2 (1-69)||(17826379-17826447)
chr2 (127-266)||(17826252-17826393)
chr2 (1-44)||(14230684-14230727)
[»] scaffold1964 (2 HSPs)
scaffold1964 (126-471)||(383-743)
scaffold1964 (1-71)||(747-817)
[»] chr1 (5 HSPs)
chr1 (1-150)||(6949497-6949646)
chr1 (2-69)||(47747200-47747267)
chr1 (159-224)||(6949516-6949581)
chr1 (128-216)||(47747125-47747213)
chr1 (59-123)||(47747125-47747189)
[»] chr3 (3 HSPs)
chr3 (285-432)||(12371430-12371577)
chr3 (4-69)||(12371224-12371289)
chr3 (127-173)||(12371275-12371321)
[»] chr5 (4 HSPs)
chr5 (281-460)||(29755621-29755800)
chr5 (310-442)||(26682417-26682549)
chr5 (16-69)||(29755406-29755459)
chr5 (309-454)||(13949399-13949544)
[»] chr6 (3 HSPs)
chr6 (285-460)||(30141629-30141804)
chr6 (309-438)||(17392597-17392726)
chr6 (4-69)||(30141377-30141442)
[»] chr4 (2 HSPs)
chr4 (285-460)||(12354541-12354716)
chr4 (4-69)||(12354861-12354925)
[»] chr8 (3 HSPs)
chr8 (1-69)||(10600730-10600798)
chr8 (285-460)||(20528977-20529152)
chr8 (309-430)||(42079874-42079995)


Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 2973851 - 2974342
Alignment:
Q  1 gcatcaacgttgcatttcatacggccatgctcgggaggctgccaccgcggctggacagc---------------------agctggaacagctgctggtt 79  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||                     ||||||||||||||||||||    
T  2973851 gcatcaacgttgcaattcatacggccatgctcgggaggctgccaccgcggctggacagcagctggaacagcactagcagcagctggaacagctgctggtt 2973950  T
Q  80 ggaagacaacaggaacagcagctgttacgacagagatatcagtactagcagcagctggaacagcactagcagcagcgctaacagcggctggttggaagac 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2973951 ggaagacaacaggaacagcagctgttacgacagagatatcagtactagcagcaactggaacagcactagcagcagcgctaacagcggctggttggaagac 2974050  T
Q  180 agcaggaacagcagctgttacggcagagatatcagtactaacagctgttggttgcgtacctgcaggagcaacagacaagcttgcagcagtaaggtcattg 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2974051 agcaggaacagcagctgttacggcagagatatcagtactaacagctgttggttgcgtacctgcaggagcaacagacaagcttgcagcagtaaggtcattg 2974150  T
Q  280 gaagatgccagtcgtcaatcaaggaccgcgctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgattccaaag 379  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2974151 caagatgccagtcgtcaatcaaggaccgcgctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgcttccaaag 2974250  T
Q  380 actccaaaatattgaagccagccgttgagaaagtgtggcagataaagaatgtaacaatgcaaaaattgcctcaatggccgaggttgatgatg 471  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  2974251 actccaaaatattgcagccagccgttgagaaagtgtggcagataaagaatgtaacaacgcaaaaattgcctcaatggccgaggttgacgatg 2974342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 310 - 438
Target Start/End: Complemental strand, 14994562 - 14994434
Alignment:
Q  310 ctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgattccaaagactccaaaatattgaagccagccgttgaga 409  Q
    ||||||| |||||  | ||| |||||||||||| |||||| ||||| || |  |||||||| ||||||| ||||||||||| || || || || ||||||    
T  14994562 ctctttcaaccaccgtcgcataagtttctgtgatgtcttcgcacactttgacattcctatgcttccaaatactccaaaatagtgcagtcatcctttgaga 14994463  T
Q  410 aagtgtggcagataaagaatgtaacaatg 438  Q
    ||||||||| ||||||||||| |||||||    
T  14994462 aagtgtggcggataaagaatgcaacaatg 14994434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 17826447 - 17826379
Alignment:
Q  1 gcatcaacgttgcatttcatacggccatgctcgggaggctgccaccgcggctggacagcagctggaaca 69  Q
    |||||||||||| | || || ||||||||||| ||||||| ||||||| ||||| ||||||||||||||    
T  17826447 gcatcaacgttgtactttatgcggccatgctcaggaggcttccaccgctgctgggcagcagctggaaca 17826379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 266
Target Start/End: Complemental strand, 17826393 - 17826252
Alignment:
Q  127 gcagcagctggaacagcactagcagcagcgctaacagcggctggttggaagacagcaggaacagcagctgttacggcagagatatcagtac--taacagc 224  Q
    ||||||||||||||| | || |||  ||||||| |||| | ||||||||| ||||||||| ||||| ||||||| | |||  || ||||||  |||||||    
T  17826393 gcagcagctggaacatcgcttgcaagagcgctagcagcagttggttggaaaacagcaggagcagcatctgttacagtagaagtaacagtacgttaacagc 17826294  T
Q  225 tgttggttgcgtacctgcaggagcaacagacaagcttgcagc 266  Q
    || | | |||||||| ||||||||  ||| |||| |||||||    
T  17826293 tgctagatgcgtaccagcaggagctgcagtcaagtttgcagc 17826252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 14230727 - 14230684
Alignment:
Q  1 gcatcaacgttgcatttcatacggccatgctcgggaggctgcca 44  Q
    ||||||||||| || |||||||| ||||||||||||||||||||    
T  14230727 gcatcaacgttacacttcatacgaccatgctcgggaggctgcca 14230684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1964 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: scaffold1964
Description:

Target: scaffold1964; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 126 - 471
Target Start/End: Complemental strand, 743 - 383
Alignment:
Q  126 agcagcagctggaacagcactagcagcagcgctaacagcggctggttggaagacagcaggaacagcagctgttacggcagagatatcagtactaacagct 225  Q
    |||||||||||||||| |||||||||||||||||||| | ||||||||||  |||||||||| | || || ||||||||||||||||||| ||||||| |    
T  743 agcagcagctggaacatcactagcagcagcgctaacaactgctggttggattacagcaggaataacaactattacggcagagatatcagtgctaacag-t 645  T
Q  226 gttggttgcgtacctgcaggagcaacagacaagcttgcagca---------------gtaaggtcattgg-aagatgccagtcgtcaatcaaggaccgcg 309  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||               |||||| |||| | ||||||||| |||||||||||||||| ||    
T  644 gttggttgcgtacctacaggagcaacatacaagcttgcaacatacaagcttgcaacagtaaggccatttgcaagatgccaatcgtcaatcaaggaccacg 545  T
Q  310 ctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgattccaaagactccaaaatattgaagccagccgttgaga 409  Q
    ||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||| | ||| |||||||||    
T  544 ctctttccaccactattgctcaagtttccgtgacgtcttgccacacctttaagttcctatgcttccaaagactccaaaatattgcaaccaaccgttgaga 445  T
Q  410 aagtgtggcagataaagaatgtaacaatgcaaaaattgcctcaatggccgaggttgatgatg 471  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||    
T  444 aagtgtggcagataaagaatataacaatgcaaaaattgcctcaatggccgagggtgacgatg 383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1964; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 817 - 747
Alignment:
Q  1 gcatcaacgttgcatttcatacggccatgctcgggaggctgccaccgcggctggacagcagctggaacagc 71  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  817 gcatcaacgttgcatttcatacggccatccttgggaggctgccaccgcggctggacagcagctggaacagc 747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 6949646 - 6949497
Alignment:
Q  1 gcatcaacgttgcatttcatacggccatgctcgggaggctgccaccgcggctggacagcagctggaacagctgctggttggaagacaacaggaacagcag 100  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  6949646 gcatcaacgttgcgtttcatactgccatgctcgggaggctgccaccgcggctggacagcagctggaacagctgctggttggaagacagcaggaacaacag 6949547  T
Q  101 ctgttacgacagagatatcagtactagcagcagctggaacagcactagca 150  Q
    || ||||| |||||||||||||||||||||||||||||||| ||||||||    
T  6949546 ctattacggcagagatatcagtactagcagcagctggaacaacactagca 6949497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 47747267 - 47747200
Alignment:
Q  2 catcaacgttgcatttcatacggccatgctcgggaggctgccaccgcggctggacagcagctggaaca 69  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  47747267 catcaacgttgcatttcatatggccatgctcgggaggctgccaccgcggctggacagcagttggaaca 47747200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 6949581 - 6949516
Alignment:
Q  159 aacagcggctggttggaagacagcaggaacagcagctgttacggcagagatatcagtactaacagc 224  Q
    |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  6949581 aacagctgctggttggaagacagcaggaacaacagctattacggcagagatatcagtactagcagc 6949516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 47747213 - 47747125
Alignment:
Q  128 cagcagctggaacagcactagcagcagcgctaacagcggctggttggaagacagcaggaacagcagctgttacggcagagatatcagta 216  Q
    |||||| ||||||| |||||||| ||||   |||||| ||||||||||| |||||||||||||||||| ||||||||| ||| ||||||    
T  47747213 cagcagttggaacaacactagcaacagctggaacagctgctggttggaatacagcaggaacagcagctattacggcagggatgtcagta 47747125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 47747189 - 47747125
Alignment:
Q  59 cagctggaacagctgctggttggaagacaacaggaacagcagctgttacgacagagatatcagta 123  Q
    ||||||||||||||||||||||||| ||| |||||||||||||| ||||| ||| ||| ||||||    
T  47747189 cagctggaacagctgctggttggaatacagcaggaacagcagctattacggcagggatgtcagta 47747125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 285 - 432
Target Start/End: Original strand, 12371430 - 12371577
Alignment:
Q  285 tgccagtcgtcaatcaaggaccgcgctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgattccaaagactcc 384  Q
    ||||| || |||| ||| ||||| |||||||| |||||| ||||||||||||| || || ||||||||||||||||  |||||||| |||||||||||||    
T  12371430 tgccaatcttcaaccaaagaccgagctctttcaaccactgttgcacaagtttccgtaacatcttcccacacctttatattcctatgtttccaaagactcc 12371529  T
Q  385 aaaatattgaagccagccgttgagaaagtgtggcagataaagaatgta 432  Q
    ||||||||| ||||| ||||||||||||||||||||||| ||| ||||    
T  12371530 aaaatattgcagccaaccgttgagaaagtgtggcagatagagactgta 12371577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 12371224 - 12371289
Alignment:
Q  4 tcaacgttgcatttcatacggccatgctcgggaggctgccaccgcggctggacagcagctggaaca 69  Q
    |||| ||||||  |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  12371224 tcaatgttgcacctcatgcggccatgctcgggaggctgccaccgcagctgggcagcagctggaaca 12371289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 12371275 - 12371321
Alignment:
Q  127 gcagcagctggaacagcactagcagcagcgctaacagcggctggttg 173  Q
    ||||||||||||||| || | ||||||||||||||||| ||||||||    
T  12371275 gcagcagctggaacatcaattgcagcagcgctaacagctgctggttg 12371321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 281 - 460
Target Start/End: Original strand, 29755621 - 29755800
Alignment:
Q  281 aagatgccagtcgtcaatcaaggaccgcgctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgattccaaaga 380  Q
    ||||||||| || ||| |||||||||||||||| || || ||| |||||||||| || || | ||||||||||||||||| ||||||||| ||||||||     
T  29755621 aagatgccattcatcagtcaaggaccgcgctctatcgacaactgttgcacaagtctccgtaatgtcttcccacacctttatgttcctatgcttccaaagg 29755720  T
Q  381 ctccaaaatattgaagccagccgttgagaaagtgtggcagataaagaatgtaacaatgcaaaaattgcctcaatggccga 460  Q
    |||||||| ||||  ||||||||||| || || ||  |||||||||| |||| ||| |||||||| ||||||||||||||    
T  29755721 ctccaaaaaattgctgccagccgttgggagagcgtaacagataaagattgtagcaaagcaaaaatggcctcaatggccga 29755800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 310 - 442
Target Start/End: Complemental strand, 26682549 - 26682417
Alignment:
Q  310 ctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgattccaaagactccaaaatattgaagccagccgttgaga 409  Q
    ||||||| |||||| |||| ||||||||  | || |||||| |||||||||  |||||||| |||||||||||||||||||||| ||||| ||||||| |    
T  26682549 ctctttcaaccactgttgcgcaagtttccataacatcttcctacacctttatattcctatgtttccaaagactccaaaatattgcagccaaccgttgaaa 26682450  T
Q  410 aagtgtggcagataaagaatgtaacaatgcaaa 442  Q
    ||||||||  |||| ||| |||| ||| |||||    
T  26682449 aagtgtggtggatagagagtgtagcaaagcaaa 26682417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 29755406 - 29755459
Alignment:
Q  16 ttcatacggccatgctcgggaggctgccaccgcggctggacagcagctggaaca 69  Q
    ||||||||||||||||||||||||||| | ||| |||||||||||| |||||||    
T  29755406 ttcatacggccatgctcgggaggctgctatcgctgctggacagcagttggaaca 29755459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 454
Target Start/End: Original strand, 13949399 - 13949544
Alignment:
Q  309 gctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgattccaaagactccaaaatattgaagccagccgttgag 408  Q
    |||||||| |||||| | ||| |||||||||| | || ||||||||| || |  |||||||| ||||||| ||||||||| | || ||||| || || ||    
T  13949399 gctctttcaaccactgtcgcataagtttctgttatgttttcccacactttgacattcctatgcttccaaatactccaaaaaagtgcagccatcctttaag 13949498  T
Q  409 aaagtgtggcagataaagaatgtaacaatgcaaaaattgcctcaat 454  Q
    || | |||  |||||||||||| ||||| | |||||| || |||||    
T  13949499 aatgcgtgaaagataaagaatgcaacaaggaaaaaatagcttcaat 13949544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 285 - 460
Target Start/End: Original strand, 30141629 - 30141804
Alignment:
Q  285 tgccagtcgtcaatcaaggaccgcgctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgattccaaagactcc 384  Q
    ||||| |||||  ||||||||| |||||| ||||| ||| |||||||||| || || | ||||||||||| ||||| ||||||||| |||||||| ||||    
T  30141629 tgccattcgtccgtcaaggaccacgctctatccacaactgttgcacaagtctccgtaatgtcttcccacaactttatgttcctatgcttccaaaggctcc 30141728  T
Q  385 aaaatattgaagccagccgttgagaaagtgtggcagataaagaatgtaacaatgcaaaaattgcctcaatggccga 460  Q
    |||| ||||  ||||||||||| || || ||  |||||||||| |||||||| |||||||| ||||||||||||||    
T  30141729 aaaaaattgctgccagccgttgggagagcgtaacagataaagattgtaacaaagcaaaaatggcctcaatggccga 30141804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 438
Target Start/End: Original strand, 17392597 - 17392726
Alignment:
Q  309 gctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgattccaaagactccaaaatattgaagccagccgttgag 408  Q
    |||||||| ||||| ||  ||||||||| |||  |||| |||||||| || |  |||||||| |||||||  |||||||||| ||  |||| || |||||    
T  17392597 gctctttcaaccaccatcacacaagtttatgtttcgtcatcccacactttaacattcctatgcttccaaatgctccaaaatagtgctgccatcctttgag 17392696  T
Q  409 aaagtgtggcagataaagaatgtaacaatg 438  Q
    |||| ||||||||||||||||| |||||||    
T  17392697 aaagcgtggcagataaagaatgcaacaatg 17392726  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 30141377 - 30141442
Alignment:
Q  4 tcaacgttgcatttcatacggccatgctcgggaggctgccaccgcggctggacagcagctggaaca 69  Q
    |||||||| || |||||||| ||||||||||| |||||||| ||  ||||||||||||||||||||    
T  30141377 tcaacgttacacttcatacgaccatgctcggggggctgccatcggtgctggacagcagctggaaca 30141442  T

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Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 285 - 460
Target Start/End: Complemental strand, 12354716 - 12354541
Alignment:
Q  285 tgccagtcgtcaatcaaggaccgcgctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgattccaaagactcc 384  Q
    ||||| |||||| |||||||||||||||| || || ||| |||||||||| || || | ||||||||||||||| | ||||||||| || ||||| ||||    
T  12354716 tgccattcgtcagtcaaggaccgcgctctatcgacaactgttgcacaagtctccgtaatgtcttcccacaccttgatgttcctatgctttcaaaggctcc 12354617  T
Q  385 aaaatattgaagccagccgttgagaaagtgtggcagataaagaatgtaacaatgcaaaaattgcctcaatggccga 460  Q
    |||| ||||  ||||||||||| || || ||  || ||||||| |||||||| |||||||| ||||||||||||||    
T  12354616 aaaaaattgccgccagccgttgggagagcgtaacatataaagattgtaacaaagcaaaaatggcctcaatggccga 12354541  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 12354925 - 12354861
Alignment:
Q  4 tcaacgttgcatttcatacggccatgctcgggaggctgccaccgcggctggacagcagctggaaca 69  Q
    |||||||| || ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||    
T  12354925 tcaacgttacacttcatacggccatgctcgg-aggctgccatcgctgctggacagcagctggaaca 12354861  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 10600798 - 10600730
Alignment:
Q  1 gcatcaacgttgcatttcatacggccatgctcgggaggctgccaccgcggctggacagcagctggaaca 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10600798 gcatcaacgttgcatttcatacggccatgctcgggaggctgccaccgcggctgggcagcagctggaaca 10600730  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 285 - 460
Target Start/End: Original strand, 20528977 - 20529152
Alignment:
Q  285 tgccagtcgtcaatcaaggaccgcgctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgattccaaagactcc 384  Q
    ||||| || |||| ||| ||||| |||||||| |||||| |||||||||||||| | || ||||||||||||||||  |||||||| || |||||||  |    
T  20528977 tgccaatcttcaaccaaagaccgagctctttcaaccactgttgcacaagtttctttaacatcttcccacacctttatattcctatgctttcaaagacatc 20529076  T
Q  385 aaaatattgaagccagccgttgagaaagtgtggcagataaagaatgtaacaatgcaaaaattgcctcaatggccga 460  Q
    ||||  ||| ||||| ||||||||| ||||||||||||| ||| |||| ||| ||||| || |||||||| |||||    
T  20529077 aaaaacttgcagccaaccgttgagagagtgtggcagatagagactgtagcaaagcaaagatagcctcaatagccga 20529152  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 309 - 430
Target Start/End: Complemental strand, 42079995 - 42079874
Alignment:
Q  309 gctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgattccaaagactccaaaatattgaagccagccgttgag 408  Q
    |||||||| |||||  |||||||||||| |||   |||||||||||| || |  |||||||| ||||||| ||||||||| |||| ||||| || || ||    
T  42079995 gctctttcaaccaccgttgcacaagtttatgttttgtcttcccacactttgacattcctatgcttccaaatactccaaaaaattgtagccatcctttaag 42079896  T
Q  409 aaagtgtggcagataaagaatg 430  Q
    ||||||||| ||||||||||||    
T  42079895 aaagtgtggtagataaagaatg 42079874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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