View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13360_low_11 (Length: 238)
Name: NF13360_low_11
Description: NF13360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13360_low_11 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 11034816 - 11034594
Alignment:
| Q |
16 |
caaaaacaatactcttaatgtattgacgaaatctatgttatatatgagttgtccaaatcggatggaatactcatacattggtaattgtatgaatagaact |
115 |
Q |
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| T |
11034816 |
caaaaacaatactcttaatgtattgacgaaatctatgttatatatgagttgtccaaatcggatggaatactcatacattggtaattgtatgaatagaact |
11034717 |
T |
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| Q |
116 |
tcacactcacaggatgtgaattctttctatgttggtagctatggcaaatctctgtcggaattcgggctgggagatgggtgtcgtatacagtttatgtatc |
215 |
Q |
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| T |
11034716 |
tcaaattcacaggatgtgaattctttctatgttggtagctatggtaaatctctgtcggaattcgggctgggagatgggtgtcgtatacagtttatgtatc |
11034617 |
T |
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| Q |
216 |
tcacttctttggatgttgaagat |
238 |
Q |
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| T |
11034616 |
tcacttctttggatgttgaagat |
11034594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 38 - 221
Target Start/End: Complemental strand, 11009381 - 11009198
Alignment:
| Q |
38 |
ttgacgaaatctatgttatatatgagttgtccaaatcggatggaatactcatacattggtaattgtatgaatagaacttcacactcacaggatgtgaatt |
137 |
Q |
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||||||||||||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
11009381 |
ttgacgaaatctatgttatatgtgagctgtccgaatcggatggaatattcatacattggtaattgtatgaatagaacttcatattcacaggatgtgaatt |
11009282 |
T |
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| Q |
138 |
ctttctatgttggtagctatggcaaatctctgtcggaattcgggctgggagatgggtgtcgtatacagtttatgtatctcactt |
221 |
Q |
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| T |
11009281 |
ctttctatgttggtggctatggtaaatctctgttggaatttgggttgggagacgggtgtcatatagagtttatgtatctcactt |
11009198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 238
Target Start/End: Complemental strand, 10975419 - 10975217
Alignment:
| Q |
36 |
tattgacgaaatctatgttatatatgagttgtccaaatcggatggaatactcatacattggtaattgtatgaatagaacttcacactcacaggatgtgaa |
135 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||| ||||||||||||| ||||||| ||||||| ||| |||| ||||||| | | ||| |
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| T |
10975419 |
tattgacgaaatctatgttatacgtgagttgtccaaattggacggaatactcatacgttggtaactgtatgagtagtggttcatactcacaacacgggaa |
10975320 |
T |
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| Q |
136 |
ttctttctatgttggtagctatggcaaatctctgtcggaattcgggctgggagatgggtgtcgtatacagtttatgtatctcacttctttggatgttgaa |
235 |
Q |
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| T |
10975319 |
tcgtttctatgttggtcgctacagcaaatctctttcggaattggtgttgaaagacacttgtcgtgtagagtttatgtatctcacatctttaaattttgaa |
10975220 |
T |
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| Q |
236 |
gat |
238 |
Q |
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||| |
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| T |
10975219 |
gat |
10975217 |
T |
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