View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13360_low_2 (Length: 725)
Name: NF13360_low_2
Description: NF13360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13360_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 19 - 579
Target Start/End: Complemental strand, 36458606 - 36458064
Alignment:
| Q |
19 |
atttcacagctcatatgattttgggtatctagttaagattttgactcagaattacttaccgtctcgattggaggaattcttaagcatcttaacg-aaata |
117 |
Q |
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| T |
36458606 |
atttcacagctcatatgattttgggtatctagttaagattttgactcagaattacttaccgtctcgattggaggaattcttaagcatcttaacacaaata |
36458507 |
T |
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| Q |
118 |
ttttggacggaatgtctatgatatgaagtatatgatcaaattctgcaacttatatggtggtctggaacgtgttgccactaaactcaaggtcagccgggcg |
217 |
Q |
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| T |
36458506 |
ttt-ggacagaatgtctatgatatgaagtatatgatcaaattctgcaacttatatggtggtctggaacgtgttgccactaaactcaaggtcagccgggcg |
36458408 |
T |
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| Q |
218 |
gtcggaaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatgaaggacatttattttgtcaacaatggaatcactatgc |
317 |
Q |
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| T |
36458407 |
gtcggaaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatgaaggacatttattttgtcaacaatggaatcactatgc |
36458308 |
T |
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| Q |
318 |
acgcaggggtgttatttggtttagaagtgacagtttaggattagaaaaagaaaattgtaaaaatatattggtattctttgttttggaatcaacgttatta |
417 |
Q |
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| T |
36458307 |
acgcaggggtgttatttgggttagaagtgacagtttaggattagaaaaagaaaattgtaaaaatatattggtattctttgttttggaatcaacgttatta |
36458208 |
T |
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| Q |
418 |
ctttaatgtctatattactactttagtttctctaaagcttatcatgaattagaaacttgaatgaaatagagagccacataaagtgaaagcctattatcca |
517 |
Q |
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| T |
36458207 |
ctttaatgtctatattactactttagtttctctaaagcttatca-----------------tgaaatagagagccacataaagtgaaagcctattatcca |
36458125 |
T |
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| Q |
518 |
accaatggcatactcctcctaggtgatagaaataatttatagcaagctctaattcaaaataa |
579 |
Q |
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| T |
36458124 |
accaatggcatgctcctcctaggtgatacaagtaatttgtag-aagctctaagtcgaaataa |
36458064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 580 - 704
Target Start/End: Complemental strand, 36457924 - 36457800
Alignment:
| Q |
580 |
aaataagatgcaaatgagtacatgaggtactcaaccccaatacacaatgttcaacttctataacattctaaatagcataaactccagccgcagaatgtca |
679 |
Q |
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| T |
36457924 |
aaataagatgcatatgagtacataaggtactcaaccccaatacacaatgttcaacttttataacattctaaatagcataaactccagccagagaatgtca |
36457825 |
T |
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| Q |
680 |
ttttcggtctgctacctattttcga |
704 |
Q |
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| T |
36457824 |
ttttcggtctgctacctattttcga |
36457800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 221 - 295
Target Start/End: Complemental strand, 40874816 - 40874742
Alignment:
| Q |
221 |
ggaaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatgaaggacatttatttt |
295 |
Q |
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| T |
40874816 |
ggaaagtctcatcaagctggatcagatagtttgttgacgtggcatgcatttaagaaaatgatggatacttatttt |
40874742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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