View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13360_low_5 (Length: 382)
Name: NF13360_low_5
Description: NF13360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13360_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 60 - 375
Target Start/End: Complemental strand, 11034388 - 11034077
Alignment:
| Q |
60 |
agttggttgcttaattttcttttatttacaattacatcgatcttccacacccatttgttagagtgagtgctactaattaacacttaatctgttactatgc |
159 |
Q |
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| T |
11034388 |
agttggttgcttaattttcttttatttacaattacatcgatcttccacacccatttgttagagtgagtgctactaattaacactcaatctgttactatgc |
11034289 |
T |
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| Q |
160 |
tttgtgtatgtccttgcagcttactggaataatgtggcttggatagttgcacgtttatcgagtcgcataggtaagcaagacataagacttaaaataaagt |
259 |
Q |
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| T |
11034288 |
tttgtgtatgtccttgcagcttactggaataatgtggcttggatagttgcatgtttatcgagtcgcacaggtaagcaagacataagacttaaaataaagt |
11034189 |
T |
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| Q |
260 |
ttagaaaacaaattttcagtacaaaaactatnnnnnnnncttgttctgttgttagtatgatgtcttttcttctaaaaaacttgtcaatagtaagtaatat |
359 |
Q |
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| T |
11034188 |
ttagaaaacaaattttcagtacaaaaactataaaaaaaacttgttctgttgttagtatgatgtcttttcttctaaaaaacttgtaaat----agtaatat |
11034093 |
T |
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| Q |
360 |
tgggcaatattcttcg |
375 |
Q |
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| T |
11034092 |
tgggcaatatttttcg |
11034077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 11008978 - 11008834
Alignment:
| Q |
74 |
ttttcttttatttacaattacatcgatcttccacacccatttgttagagtgagtgctactaattaacacttaatctgttactatgctttgtgtatgtcct |
173 |
Q |
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|||||| ||||||||||| | | ||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||| |||||||||| ||| || || |
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| T |
11008978 |
ttttctattatttacaatcgcgtggatcttccacatccatttgttagagtgagtgctactaaataacactcaatatgtcactatgctttatgtttgctct |
11008879 |
T |
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| Q |
174 |
tgcagcttactggaataatgtggcttggatagttgcacgtttatc |
218 |
Q |
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| T |
11008878 |
tgcagattactggaataacgcggcttggatagttgcacgtttatc |
11008834 |
T |
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