View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13360_low_6 (Length: 371)
Name: NF13360_low_6
Description: NF13360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13360_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 7 - 356
Target Start/End: Complemental strand, 10540113 - 10539763
Alignment:
| Q |
7 |
caaacaaaccctaacgggtaagactctaacaatgatgaaccacatgttgaaaacaaaccaacaccaacaatgctggaatcgttgttaccattggttgatt |
106 |
Q |
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| T |
10540113 |
caaacaaaccctaacgggaaaaactctaacaatgatgaaccacatgttgataacaaaccaacaccaacaatgctggaatcgttgttaccattggttgatt |
10540014 |
T |
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| Q |
107 |
ctagtttgatttctgcaaccacccc-tgcaggcgtcaaggaatatcaaaactcgtacgtgttcgagatggatatgccgggaatgaaatctgatgatatca |
205 |
Q |
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| T |
10540013 |
ctagtttgatttctgcaaccaccccctgcagacgtgaaggaatatcaaaactcgtacgtgttcgagacagatatgctgggaatgaaatctgatgatatca |
10539914 |
T |
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| Q |
206 |
aggttgaggttgaagatgataatgttgttgtgataaccggcgagaggaagagggaagaaggtagctgcgtcaagtacctgatcatggagcaaagaagaag |
305 |
Q |
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| T |
10539913 |
aggttgaggttgaagatgataatgtggttgtgataaccggcgagaggaagagggaagaaggtggccgcgtcaagtacctgaacatggagcaaagaagaag |
10539814 |
T |
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| Q |
306 |
gtttggaaagttcaccggaaggtttcttcttcctgagaatgctaatgctga |
356 |
Q |
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| T |
10539813 |
gtttgggaagttcaccggaaggtttcttcttcctcaagatgctaatgctga |
10539763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 89 - 358
Target Start/End: Original strand, 10462094 - 10462366
Alignment:
| Q |
89 |
tgttaccattggttgattctagtttgatttctgcaaccacccctgcaggcgtcaaggaatatcaaaactcgtacgtgttcgagatggatatgccgggaat |
188 |
Q |
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| T |
10462094 |
tgttacccttggttgattctagtttgatgactataaccacctctgcagacgtgaaggaataccaaaactcattcgtattcgagatggacttgccgggatt |
10462193 |
T |
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| Q |
189 |
gaaatctgatgatatcaaggttgaggttgaagatgataatgttgttgtgataaccggcgagaggaagagggaagaagg---tagctgcgtcaagtacctg |
285 |
Q |
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| T |
10462194 |
gaaatctggtgatatcaaggttgaggttgaagatgataaagtggttgtgataaccggcgagaggaagagggaagaaggaggtggcggagtcaagtaccta |
10462293 |
T |
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| Q |
286 |
atcatggagcaaagaagaaggtttggaaagttcaccggaaggtttcttcttcctgagaatgctaatgctgatg |
358 |
Q |
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| T |
10462294 |
aacatggagcagcgaagaatgtttgggaagttcagtggaaggtttcttcttcctgagaatgctaatgctgatg |
10462366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 265
Target Start/End: Complemental strand, 3745033 - 3744910
Alignment:
| Q |
142 |
aaggaatatcaaaactcgtacgtgttcgagatggatatgccgggaatgaaatctgatgatatcaaggttgaggttgaagatgataatgttgttgtgataa |
241 |
Q |
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|||||| |||| || || |||||||||| ||| || ||||| ||| ||||||||| ||||| |||||| |||| ||||||||||| || ||||||||| |
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| T |
3745033 |
aaggaagatcagaattcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataa |
3744934 |
T |
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| Q |
242 |
ccggcgagaggaagagggaagaag |
265 |
Q |
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| T |
3744933 |
gcggagagaggaagagggaagaag |
3744910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 148 - 265
Target Start/End: Complemental strand, 48303228 - 48303111
Alignment:
| Q |
148 |
tatcaaaactcgtacgtgttcgagatggatatgccgggaatgaaatctgatgatatcaaggttgaggttgaagatgataatgttgttgtgataaccggcg |
247 |
Q |
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|||| |||||| |||||||||| | |||| ||||| || ||||||||| ||| ||||||||| ||||||||||||| ||||| || |||||| ||| | |
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| T |
48303228 |
tatccaaactcatacgtgttcgtggtggacatgccagggttgaaatctggtgacatcaaggttcaggttgaagatgagaatgtgcttctgataagcggtg |
48303129 |
T |
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| Q |
248 |
agaggaagagggaagaag |
265 |
Q |
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| T |
48303128 |
aaaggaagagagaagaag |
48303111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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