View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13360_low_8 (Length: 327)
Name: NF13360_low_8
Description: NF13360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13360_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 24 - 310
Target Start/End: Original strand, 52827316 - 52827602
Alignment:
| Q |
24 |
tctattatacgaactaactttgacatccttattgtagatgttgtcgtgtttttctttcccttcttcgtttataccttgactagagttagagagggttaca |
123 |
Q |
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| T |
52827316 |
tctattatacgaactaactttgacatccttattgtagatgttgtcgtgtttttctttcccttcttcgtttataccttgactagagttagagagggtaaca |
52827415 |
T |
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| Q |
124 |
aaagtggcattgcctttattaggagcattgacatttgtgtgttcttcatcacctttgagcccaacaattgctattaaaaggagtaatagacagacaaccc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52827416 |
aaagtggcattgcctttattaggagcattgacatttgtgtgttcttcatcacctttgagcccaacaattgctattaaaaggagtaatagacagacaaccc |
52827515 |
T |
|
| Q |
224 |
catgatttctgaaggtctccatctttaaccacacacactatcgaaaacaaaatcttatgctacacatgctgtctccttcaaattaag |
310 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
52827516 |
catgatttctgaaggtctccatctttaagcacacacactatcgaaaacaaaatcttatactacacatgctgtctccttcaaattaag |
52827602 |
T |
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