View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13360_low_9 (Length: 294)

Name: NF13360_low_9
Description: NF13360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13360_low_9
NF13360_low_9
[»] chr8 (3 HSPs)
chr8 (9-277)||(6575153-6575422)
chr8 (55-165)||(8194608-8194718)
chr8 (70-176)||(36998525-36998631)
[»] scaffold0175 (1 HSPs)
scaffold0175 (38-276)||(31906-32145)
[»] chr6 (2 HSPs)
chr6 (70-162)||(13327372-13327464)
chr6 (55-165)||(12895485-12895595)
[»] chr4 (4 HSPs)
chr4 (70-176)||(33832451-33832557)
chr4 (70-176)||(37919222-37919328)
chr4 (44-111)||(20704820-20704887)
chr4 (47-100)||(14796667-14796720)
[»] chr3 (2 HSPs)
chr3 (70-179)||(36498381-36498490)
chr3 (70-174)||(35002361-35002465)
[»] chr1 (1 HSPs)
chr1 (47-165)||(27821891-27822010)
[»] chr5 (1 HSPs)
chr5 (55-106)||(22162928-22162979)
[»] chr7 (3 HSPs)
chr7 (77-179)||(6998372-6998474)
chr7 (77-164)||(42359665-42359752)
chr7 (77-179)||(7926882-7926984)
[»] chr2 (1 HSPs)
chr2 (77-162)||(32665554-32665639)
[»] scaffold0005 (1 HSPs)
scaffold0005 (47-100)||(43011-43064)


Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 277
Target Start/End: Original strand, 6575153 - 6575422
Alignment:
Q  9 agcagagatcatgttgtttcatacaatataacaactcagaacgatctttcattaaaaatacccaagtacatcttgagaaatcatcaataaaagtaacata 108  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6575153 agcagagatcatggtgtttcatacaatataacaactcagaacgatctttcattaaaaatacccaagtacatcttgagaaatcatcaataaaagtaacata 6575252  T
Q  109 atacttgtaacctaaggtagaaggaacacgattaggaccccaaatatcagaatgaacaacatcaaagggagccatatctctattattaatacgattagaa 208  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6575253 atacttgtaacctaaggtagaaggaacacgactaggaccccaaatatcagaatgaacaacatcaaagggagccatagctctattattaatacgattagaa 6575352  T
Q  209 aaagagactctaacatgttttcctaattgacaagactcgcactgtaaatactctaaatg-ggaagaccat 277  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| || || ||||||||||    
T  6575353 aaagagactctaacatgtttttctaattgacaagactcgcactgtaaatactccaactgaggaagaccat 6575422  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 165
Target Start/End: Original strand, 8194608 - 8194718
Alignment:
Q  55 tttcattaaaaatacccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaata 154  Q
    |||||| |||||||||||||||||||| || || |||||||||||||||||| |||| |  ||||| ||    |||  ||||||  ||||||||||||||    
T  8194608 tttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaaatattgataacccaaacatgaaacaacacggctaggaccccaaata 8194707  T
Q  155 tcagaatgaac 165  Q
    |||||||||||    
T  8194708 tcagaatgaac 8194718  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 176
Target Start/End: Complemental strand, 36998631 - 36998525
Alignment:
Q  70 ccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaatatcagaatgaacaaca 169  Q
    |||||||||||  ||||||||||| || ||||||||||||||| |||| |||||  ||||||| |  ||| ||||||||||||||||| |||| |||| |    
T  36998631 ccaagtacatcgcgagaaatcatcgatgaaagtaacataatacctgtatcctaaattagaaggcatgcgactaggaccccaaatatcaaaatgcacaata 36998532  T
Q  170 tcaaagg 176  Q
    || ||||    
T  36998531 tcgaagg 36998525  T

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Target: scaffold0175 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 38 - 276
Target Start/End: Complemental strand, 32145 - 31906
Alignment:
Q  38 aacaactcagaacgatctttcattaaaaatacccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacac 137  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  32145 aacaactcagaatgatctttcattaaaaatacccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaaaac 32046  T
Q  138 gattaggaccccaaatatcagaatgaacaacatcaaagggagccatatctctattattaatacgattagaaaaagagactctaacatgttttcctaattg 237  Q
    || |||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||||||||    
T  32045 gactaggaccccaaacatcaaaatgaacaacatcaaagggagccataactctattattaatacggttagaaaaagaaactctaacatattttcctaattg 31946  T
Q  238 acaagactcgcactgtaaatactctaaatg-ggaagacca 276  Q
    ||||||||||||| ||||| ||||||| || |||||||||    
T  31945 acaagactcgcaccgtaaagactctaactgaggaagacca 31906  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 13327372 - 13327464
Alignment:
Q  70 ccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaatatcagaatg 162  Q
    |||||| |||| |||||||||||| ||  ||||||||||||||||||| |||||  |||| || ||| |||||||||||||||||||| ||||    
T  13327372 ccaagtccatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgattaggaccccaaatatcataatg 13327464  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 12895595 - 12895485
Alignment:
Q  55 tttcattaaaaatacccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaata 154  Q
    ||||||||| |||||||||||||||| ||| |||||||||||||| || ||| | ||   ||||||||| || ||   ||||||| |||||||||||| |    
T  12895595 tttcattaagaatacccaagtacatcgtgaaaaatcatcaataaacgttacaaagtaagagtaacctaaagttgactcaacacgactaggaccccaaaca 12895496  T
Q  155 tcagaatgaac 165  Q
    || ||||||||    
T  12895495 tctgaatgaac 12895485  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 176
Target Start/End: Complemental strand, 33832557 - 33832451
Alignment:
Q  70 ccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaatatcagaatgaacaaca 169  Q
    |||||||||||  ||||||||||| ||||| |||||||||||| |||| |||||  |||| |||||  |  |||||||||||||||||||||| |||| |    
T  33832557 ccaagtacatcgcgagaaatcatcgataaatgtaacataatacctgtatcctaaattagagggaacgtggctaggaccccaaatatcagaatgcacaata 33832458  T
Q  170 tcaaagg 176  Q
    || ||||    
T  33832457 tcgaagg 33832451  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 37919222 - 37919328
Alignment:
Q  70 ccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaatatcagaatgaacaaca 169  Q
    |||||||||||  ||||||||||| ||||| |||||||||||| |||| |||||  ||||  |||| ||  || ||||||||||||||||||| |||| |    
T  37919222 ccaagtacatcgcgagaaatcatcgataaatgtaacataatacctgtatcctaaattagagagaacgcggctacgaccccaaatatcagaatgcacaata 37919321  T
Q  170 tcaaagg 176  Q
    || ||||    
T  37919322 tcgaagg 37919328  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 20704887 - 20704820
Alignment:
Q  44 tcagaacgatctttcattaaaaatacccaagtacatcttgagaaatcatcaataaaagtaacataata 111  Q
    ||||| || ||||||||||| || |||||||||||||| || || ||||||||||| |||||| ||||    
T  20704887 tcagatcgttctttcattaagaaaacccaagtacatctagaaaattcatcaataaaggtaacaaaata 20704820  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 14796720 - 14796667
Alignment:
Q  47 gaacgatctttcattaaaaatacccaagtacatcttgagaaatcatcaataaaa 100  Q
    ||||||| ||||||||| | || ||||||||||| ||| |||||||||||||||    
T  14796720 gaacgatttttcattaacagtaaccaagtacatcgtgaaaaatcatcaataaaa 14796667  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 36498490 - 36498381
Alignment:
Q  70 ccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaatatcagaatgaacaaca 169  Q
    |||||| ||||| |||||||||||||| ||||| |||||||| ||||| || || ||||| |  |||||| |||||||||||| ||||||||| |  | |    
T  36498490 ccaagtgcatctagagaaatcatcaatgaaagtgacataatatttgtatcccaaagtagacgacacacgactaggaccccaaacatcagaatggatgata 36498391  T
Q  170 tcaaagggag 179  Q
    ||||||||||    
T  36498390 tcaaagggag 36498381  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 174
Target Start/End: Original strand, 35002361 - 35002465
Alignment:
Q  70 ccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaatatcagaatgaacaaca 169  Q
    |||||| ||||| |||||||||||||| ||| ||||||||||  |||| |||||   | | || ||| || |||||||||||| |||| ||||||||| |    
T  35002361 ccaagtgcatctcgagaaatcatcaatgaaactaacataatatctgtatcctaaataatagggtacatgactaggaccccaaacatcataatgaacaata 35002460  T
Q  170 tcaaa 174  Q
    |||||    
T  35002461 tcaaa 35002465  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 165
Target Start/End: Original strand, 27821891 - 27822010
Alignment:
Q  47 gaacgatctttcattaaaa-atacccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattagga 145  Q
    ||||||| ||||||||||| |||| ||||||||||| || || |||||||||||||||||| |||| |  ||||| ||    |||  ||||||| |||||    
T  27821891 gaacgatttttcattaaaatatactcaagtacatctagaaaagtcatcaataaaagtaacaaaatattgataacccaaacatgaaacaacacgactagga 27821990  T
Q  146 ccccaaatatcagaatgaac 165  Q
    |||||||||||| |||||||    
T  27821991 ccccaaatatcaaaatgaac 27822010  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 22162928 - 22162979
Alignment:
Q  55 tttcattaaaaatacccaagtacatcttgagaaatcatcaataaaagtaaca 106  Q
    |||||| |||||||||||||||||||| || || ||||||||||||||||||    
T  22162928 tttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaaca 22162979  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 6998474 - 6998372
Alignment:
Q  77 catcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaatatcagaatgaacaacatcaaagg 176  Q
    ||||| || ||||||||||| ||||| |||||||| ||||| || || |||||    || ||| |||||||||| | |||||||||||||| ||||||||    
T  6998474 catctagaaaaatcatcaatgaaagtgacataatatttgtatcccaaagtagacatcacccgactaggaccccacacatcagaatgaacaatatcaaagg 6998375  T
Q  177 gag 179  Q
    |||    
T  6998374 gag 6998372  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 164
Target Start/End: Original strand, 42359665 - 42359752
Alignment:
Q  77 catcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaatatcagaatgaa 164  Q
    ||||| |||||||||||||| ||||| |||||||| ||||| || || ||||| |  || ||| | |||||||||| |||||||||||    
T  42359665 catctagagaaatcatcaatgaaagtgacataatatttgtatcccaaagtagacgacacgcgactgggaccccaaacatcagaatgaa 42359752  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 7926984 - 7926882
Alignment:
Q  77 catcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaatatcagaatgaacaacatcaaagg 176  Q
    ||||| || ||||||||||| ||||| ||||||||  | || || || |||||  | || ||| |||||||||| | |||||||||||||| ||||||||    
T  7926984 catctagaaaaatcatcaatgaaagtgacataatatctatatcccaaagtagacagcacccgactaggaccccatacatcagaatgaacaatatcaaagg 7926885  T
Q  177 gag 179  Q
    |||    
T  7926884 gag 7926882  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 32665554 - 32665639
Alignment:
Q  77 catcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaatatcagaatg 162  Q
    ||||| |||||||||||| | ||||| |||||||| ||||| || || ||||| |  |||||| |||||||||||| |||||||||    
T  32665554 catctagagaaatcatcattgaaagtgacataatatttgtatcccaaagtagacgacacacgactaggaccccaaacatcagaatg 32665639  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 43011 - 43064
Alignment:
Q  47 gaacgatctttcattaaaaatacccaagtacatcttgagaaatcatcaataaaa 100  Q
    ||||||| ||||||||| | || ||||||||||| ||| |||||||||||||||    
T  43011 gaacgatttttcattaacagtaaccaagtacatcgtgaaaaatcatcaataaaa 43064  T

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