View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13361_high_5 (Length: 402)
Name: NF13361_high_5
Description: NF13361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13361_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 10969715 - 10970117
Alignment:
| Q |
1 |
aaagaaacaaagaagaaaattgaagtcaaacgttggcaaccaaatttaagtcttagcttcacttcaaggaggtttgatgagaatgttttgtcacctcaca |
100 |
Q |
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| T |
10969715 |
aaagaaacaaagaagaaaattgaagtcaaacgttggcaaccaaatttaagtcttagcttcacttcaacgaggtttgatgagaatgttttgtcacctcaca |
10969814 |
T |
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| Q |
101 |
atcacataatcatatctcctcattcaccacttgttcgagccacatgaatatggagttaattagaatgtcccatgggattttctttcttattttgataaaa |
200 |
Q |
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| T |
10969815 |
atcacataatcatatctcctcattcaccacttgttcgagccacatgaatatggagttaattagaatgtcccatgggattttctttcttattttgataaaa |
10969914 |
T |
|
| Q |
201 |
taatgtgagagggaaattcatgtatac--------ctagctagctatttatgattttatttttcttctagctagctaaatggatctttgtgtgtaggtgt |
292 |
Q |
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| T |
10969915 |
taatgtgagagggaaattcatgtatacctagctagctagctagctatttatgattttatttttcttctagctagctaaatggatctttgtgtgtaggtgt |
10970014 |
T |
|
| Q |
293 |
tattatatttacaaaaagctaatgtgtgtgtgaagtagggtaacttttggctaatgtggctattttatctatgaagtttcattttcctttgtttatgatg |
392 |
Q |
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| T |
10970015 |
tattatatttacaaaaagctaatttgtgtgtgaagtagggtagcttttggctaatgtagctattttatctatgaagtttcattttcttttgtttatgatg |
10970114 |
T |
|
| Q |
393 |
atg |
395 |
Q |
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||| |
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| T |
10970115 |
atg |
10970117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 7754327 - 7754209
Alignment:
| Q |
109 |
atcatatctcctcattcaccacttgttcgagccacatgaatatg---gagttaattagaatgtcccatgggattttctttcttattttgataaaataatg |
205 |
Q |
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||||||| |||||||||||||||||||||||| ||||| ||||| || | |||||||| || | |||| ||||||||||||||||||||||||||||| |
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| T |
7754327 |
atcatatttcctcattcaccacttgttcgagcaacatggatatgatggaataaattagaaagttctatggaattttctttcttattttgataaaataatg |
7754228 |
T |
|
| Q |
206 |
tgagagggaaattcatgta |
224 |
Q |
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|| |||| |||| ||||| |
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| T |
7754227 |
tgctaggggaatttatgta |
7754209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 7754388 - 7754331
Alignment:
| Q |
20 |
ttgaagtcaaacgttggcaaccaaatttaagtcttagcttcacttcaaggaggtttgatgaga |
82 |
Q |
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| T |
7754388 |
ttgaagtcaaacgttggcaaccaaatttaag-----gcttcacttcaaggaggtttgatgaga |
7754331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 29963440 - 29963392
Alignment:
| Q |
52 |
cttagcttcacttcaaggaggtttgatgagaatgttttgtcacctcaca |
100 |
Q |
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| T |
29963440 |
cttagcttttcttcaagaaggtttgatgagaatgttatgtctcctcaca |
29963392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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