View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13361_high_7 (Length: 355)
Name: NF13361_high_7
Description: NF13361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13361_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 45666847 - 45667047
Alignment:
| Q |
1 |
tggtcaagctactttcccttttttgctgtaaaaaagttatagtgatactaaagagaaaatactctgtcagggaggtggatggtgtaacaatgtcagatca |
100 |
Q |
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| T |
45666847 |
tggtcaagctactttcccttttttgctgtaaaaaagttatagtgatactaaagagaaaatactctgtcagggaggtggatggtgtaacaatgtcagatca |
45666946 |
T |
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| Q |
101 |
tgtgtttatcgcaagaaaacacggcatggatcatcattatacatggaaaaggagataccattcacaggaatacttagtaataaacctgaagaaaatccag |
200 |
Q |
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| T |
45666947 |
tgtgtttatcgcaagaaaacacggcgtggatcatcattatacatggaaaaggagataccattcacaggaatacttagtaataaacctgaagaaaatccag |
45667046 |
T |
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| Q |
201 |
g |
201 |
Q |
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| T |
45667047 |
g |
45667047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 251 - 342
Target Start/End: Original strand, 45667097 - 45667188
Alignment:
| Q |
251 |
gttgtaggcattagtctctctgatcatgttattgttgctcgtgttcgcagattttttcaactggaatagagtaaagcttcgttattgtgatg |
342 |
Q |
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| T |
45667097 |
gttgtaggcattagtctctctgatcatgttattgttgctcgtgttcgcagattttttcaactggaatagagcaaagcttcgttattgtgatg |
45667188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 38257767 - 38257829
Alignment:
| Q |
139 |
atacatggaaaaggagataccattcacaggaatacttagtaataaacctgaagaaaatccagg |
201 |
Q |
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| T |
38257767 |
atacatggaaaatcaaataccattcacaggaatattgagcaataaacctgaagaaaacccagg |
38257829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 51344537 - 51344492
Alignment:
| Q |
297 |
gcagattttttcaactggaatagagtaaagcttcgttattgtgatg |
342 |
Q |
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| T |
51344537 |
gcagattttttcaattggaatagagtaaaaattcgttattgtgatg |
51344492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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