View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13361_high_9 (Length: 317)
Name: NF13361_high_9
Description: NF13361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13361_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 2615030 - 2615269
Alignment:
| Q |
1 |
ctgctgaagttgtcaacaacaggtacaggtttagaggcaaaaagtctcttccaaaaagaggacaaataaaatcaaagatagcagcaagtgcttttcattc |
100 |
Q |
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| T |
2615030 |
ctgctgaagttgtcaacaacaggaacaggtttagaggcaaaaagtctcttccaaaaagaggacaaataaaatcaaagatagcagcaagtgcttttcattc |
2615129 |
T |
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| Q |
101 |
cattgtctcagtaatttcaagggcttcaacttcatctggtttgctttctccaagaaaaaactagtctc--ttcaagctatgtattattatagtataagga |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||| |
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| T |
2615130 |
cattgtctcagtaatttcaagggcttcaacttcatctggtttgctttctccaagaaaaaactagtctcagtt---gatatgtattattatagtataagga |
2615226 |
T |
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| Q |
199 |
catttttgtttgtatattgtatctagttttcatgttttcctct |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2615227 |
catttttgtttgtatattgtatctagttttcatgttttcctct |
2615269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 2615288 - 2615328
Alignment:
| Q |
263 |
tgtctttggtttactaagcgtttgatccatgccacctccct |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
2615288 |
tgtctttggtttactaagcgtttgatccatgccacctccct |
2615328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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