View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13361_low_1 (Length: 869)
Name: NF13361_low_1
Description: NF13361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13361_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 641; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 20 - 849
Target Start/End: Original strand, 10195755 - 10196577
Alignment:
| Q |
20 |
aggagcaccgttggtcgatagagtttcaactttcaaatgatttttaagtatggttacaccgtataaaatatagaacccaccttcatcgagaatatgaaca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10195755 |
aggagcaccgttggtcgatagagtttcaactttcaagtgatttttaagtatggttacaccgtataaaatatagaacccaccttcattgagaatatgaaca |
10195854 |
T |
|
| Q |
120 |
ttcttattatgtaaactacctaaaaattatgccatttgatttgagataagaagagagagagatatgattatatacctgacatgttggtaacagaattccg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10195855 |
ttcttattatgtaaactacctaaaaattatgccatttgatttgagataagaagagagagagatatgattatatacctgacatgttggtaacagaattccg |
10195954 |
T |
|
| Q |
220 |
aactcttctttcacagccatcacagtccattttcacctttatttcaactgtctataagagnnnnnnnnnnnnnnnnnnnnnntcagaattttcttaagac |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10195955 |
aactcttctttcacagccatcacagtccattttcacctttatttcaactgtctataagagaaaaaagttgcaaaaaataaaatcagaattttcttaagac |
10196054 |
T |
|
| Q |
320 |
taataagctcactattaatgagataggatacataggagctagtgaaaaacctgcatgggtttgtgtttcttttttggggtgacagtgaagtaatctgaaa |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10196055 |
taataagctcactattaatgagataggatacataggagctagtgaaaaacctgcatgggtttgtgtttcttttttggggtgacagtgaagtaatctgaaa |
10196154 |
T |
|
| Q |
420 |
ggaaatctagagcacccattttcttatttcttgctcnnnnnnnngtgtaaagaaagaaatggattgggttagtacttgaaaagaaaaaggatgaaaaagg |
519 |
Q |
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| T |
10196155 |
ggaaatctagagcacccattttcttatttcttgctc-tttttttgtgtaaagaaagaaatggattgggttagtacttgaaaagaaaaaggatggaaaagg |
10196253 |
T |
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| Q |
520 |
aggatgtatatgactatattatggttaccaaattatatacttttataaaggaattatggaactatggatgtgatttcggttactatatgtgcaacttgtg |
619 |
Q |
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| T |
10196254 |
aggatgtatatgactatattatggttaccaaattatatacttttataaaggaattatggaactatggatgtgatttcggttactatatgtgcaacttgtg |
10196353 |
T |
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| Q |
620 |
ctaaaatttataatgcataaaataatgcttagacaattatttttcatttcatagtcatctcaa-nnnnnnnncatattgtctctaatcatgtatcttccc |
718 |
Q |
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|||||||| ||||||||||||||||||||| | ||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
10196354 |
ctaaaatt--taatgcataaaataatgcttaaataattatt-----tttcatagtcatctcaatttttttttcatattgtctctaatcatgtatattccc |
10196446 |
T |
|
| Q |
719 |
gcaaatatcggggtgaccccaattcacaaatataattgaacattgaacttcctttgaacttttctacacaatatcatcttgatttgtatctgtctatgat |
818 |
Q |
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| T |
10196447 |
gcaaatatcggggtgaccccaattcacaaatataattgaacattgaacttcctttgaacttttctacacaatatcatcttgatctgtacctgtctatgat |
10196546 |
T |
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| Q |
819 |
agggatttgacaataagaatgttatgtggat |
849 |
Q |
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| T |
10196547 |
agggatttgacaataagaatgttatgtggat |
10196577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 10651177 - 10651113
Alignment:
| Q |
208 |
aacagaattccgaactcttctttcacagccatcacagtccattttcacctttatttcaactgtct |
272 |
Q |
| |
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||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| |||| |
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| T |
10651177 |
aacagaattcctaactcttctttcacatccatcacagtccattttcaccttgatttcaaccgtct |
10651113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 276
Target Start/End: Complemental strand, 31886871 - 31886816
Alignment:
| Q |
221 |
actcttctttcacagccatcacagtccattttcacctttatttcaactgtctataa |
276 |
Q |
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| T |
31886871 |
actcttctttcacacccatcacaatccattttgactttgatctcaactgtctataa |
31886816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 54328 - 54277
Alignment:
| Q |
221 |
actcttctttcacagccatcacagtccattttcacctttatttcaactgtct |
272 |
Q |
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| T |
54328 |
actcttctttcacaaccatcacagtccattctcacttttatctcaaccgtct |
54277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 276
Target Start/End: Complemental strand, 2306684 - 2306629
Alignment:
| Q |
221 |
actcttctttcacagccatcacagtccattttcacctttatttcaactgtctataa |
276 |
Q |
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|||||||||||||| |||||||| |||||||| || || || |||||||||||||| |
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| T |
2306684 |
actcttctttcacacccatcacaatccattttgactttgatctcaactgtctataa |
2306629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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