View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13361_low_11 (Length: 314)
Name: NF13361_low_11
Description: NF13361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13361_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 45666572 - 45666862
Alignment:
| Q |
19 |
cttggatggaacattacctggttaccatttgcaccgtggatatggatcaggagcagacagttggcttgttaatttagaggtatttctacaccaaataata |
118 |
Q |
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| T |
45666572 |
cttggatggaacattacctggttaccatttgcaccgtggatatggatcaggagcagacagttggcttgttaatttagaggtatttctacaccaaataata |
45666671 |
T |
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| Q |
119 |
gtattaaggttgacgagtctttcttttcttttcgt---acttcaatagcannnnnnngtgaatttgttggctgattcccattttttgcaacatacatata |
215 |
Q |
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| T |
45666672 |
gtattaaggttgacgagtctttcttttcttttcgtcgtactttaatagcatttttttgtgaattttttggctgattcccattttt-gtaacatgcatata |
45666770 |
T |
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| Q |
216 |
tgccatggcatatataattaactgaaaatatttagaaataattaaagttttaggatttctaactgtcatcatgtgttggtcaagctactttc |
307 |
Q |
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| T |
45666771 |
tgccatggcatatataattaactgaaaatatttagaaataattaaagttttaggatttctaactgtcatcatgtgttggtcaagctactttc |
45666862 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 37973772 - 37973690
Alignment:
| Q |
19 |
cttggatggaacattacctggttaccatttgcaccgtggatatggatcaggagcagacagttggcttgttaatttagaggtat |
101 |
Q |
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| T |
37973772 |
cttggatggaacattgcctgcttatcattttgatcacggatacggatccggtgcaaacagctggcttgttaatttagaggtat |
37973690 |
T |
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