View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13361_low_13 (Length: 219)

Name: NF13361_low_13
Description: NF13361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13361_low_13
NF13361_low_13
[»] scaffold0038 (5 HSPs)
scaffold0038 (81-202)||(28060-28181)
scaffold0038 (87-202)||(35337-35452)
scaffold0038 (22-80)||(28893-28951)
scaffold0038 (22-78)||(28775-28831)
scaffold0038 (118-186)||(43583-43651)
[»] chr6 (11 HSPs)
chr6 (81-202)||(28227562-28227683)
chr6 (87-202)||(28186003-28186118)
chr6 (87-202)||(28235175-28235290)
chr6 (87-189)||(28181740-28181842)
chr6 (87-190)||(28297197-28297300)
chr6 (87-190)||(28514773-28514876)
chr6 (91-178)||(28326112-28326199)
chr6 (22-80)||(28228395-28228453)
chr6 (22-78)||(28228277-28228333)
chr6 (118-186)||(28243421-28243489)
chr6 (91-123)||(28503803-28503835)
[»] scaffold0019 (2 HSPs)
scaffold0019 (87-202)||(57751-57866)
scaffold0019 (22-80)||(57095-57153)


Alignment Details
Target: scaffold0038 (Bit Score: 102; Significance: 8e-51; HSPs: 5)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 81 - 202
Target Start/End: Complemental strand, 28181 - 28060
Alignment:
Q  81 tctgtgcttcaccattagatccaacatccataagtgaatttacgtttaggaccctagattcgacaccatcagggttatcggcaacatgtaaaggaacatg 180  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||    
T  28181 tctgtgcttcaccattagatccaacatccataagtgaatttacttttaggaccctagattcaacaccaacagggtaatcggcaacatgtaaaggaacatg 28082  T
Q  181 attgatcttgttagatacatat 202  Q
    ||||||||||||||||| ||||    
T  28081 attgatcttgttagatatatat 28060  T

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Target: scaffold0038; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 202
Target Start/End: Complemental strand, 35452 - 35337
Alignment:
Q  87 cttcaccattagatccaacatccataagtgaatttacgtttaggaccctagattcgacaccatcagggttatcggcaacatgtaaaggaacatgattgat 186  Q
    |||||||||||||||||||||||| |  |||| |||| |||||||||||||| | || |||| |||||| ||||||||||| ||||||||||||||||||    
T  35452 cttcaccattagatccaacatccacacatgaagttacttttaggaccctagacttgagaccaacagggtaatcggcaacatataaaggaacatgattgat 35353  T
Q  187 cttgttagatacatat 202  Q
    |||||| |||||||||    
T  35352 cttgtttgatacatat 35337  T

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Target: scaffold0038; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 28951 - 28893
Alignment:
Q  22 caaagcatcaaaggttatttcaagtatctctaggatatcttcaatgggaatcctttcat 80  Q
    ||||||||||||| |||||| ||||||||||  ||||| || |||||||||||||||||    
T  28951 caaagcatcaaagcttattttaagtatctctgtgatatttttaatgggaatcctttcat 28893  T

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Target: scaffold0038; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 28831 - 28775
Alignment:
Q  22 caaagcatcaaaggttatttcaagtatctctaggatatcttcaatgggaatcctttc 78  Q
    ||||| ||||||| |||||| ||||||||||| ||||| || |||||||||||||||    
T  28831 caaagtatcaaagcttattttaagtatctctatgatatttttaatgggaatcctttc 28775  T

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Target: scaffold0038; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 43651 - 43583
Alignment:
Q  118 atttacgtttaggaccctagattcgacaccatcagggttatcggcaacatgtaaaggaacatgattgat 186  Q
    |||||| |||||||||||||| |||| |||| |||||| ||| ||||||| || ||||||| |||||||    
T  43651 atttacttttaggaccctagactcgagaccaacagggtaatcagcaacatatagaggaacacgattgat 43583  T

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Target: chr6 (Bit Score: 102; Significance: 8e-51; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 81 - 202
Target Start/End: Complemental strand, 28227683 - 28227562
Alignment:
Q  81 tctgtgcttcaccattagatccaacatccataagtgaatttacgtttaggaccctagattcgacaccatcagggttatcggcaacatgtaaaggaacatg 180  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||    
T  28227683 tctgtgcttcaccattagatccaacatccataagtgaatttacttttaggaccctagattcaacaccaacagggtaatcggcaacatgtaaaggaacatg 28227584  T
Q  181 attgatcttgttagatacatat 202  Q
    ||||||||||||||||| ||||    
T  28227583 attgatcttgttagatatatat 28227562  T

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Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 87 - 202
Target Start/End: Complemental strand, 28186118 - 28186003
Alignment:
Q  87 cttcaccattagatccaacatccataagtgaatttacgtttaggaccctagattcgacaccatcagggttatcggcaacatgtaaaggaacatgattgat 186  Q
    |||||||||||||||||| |||||||||||||||||| ||||| |||||||| |||| |||| |||||  ||| ||||||| ||||||||||||||||||    
T  28186118 cttcaccattagatccaaaatccataagtgaatttacttttagaaccctagactcgataccaacagggaaatcagcaacatataaaggaacatgattgat 28186019  T
Q  187 cttgttagatacatat 202  Q
    ||||||||||||||||    
T  28186018 cttgttagatacatat 28186003  T

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Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 202
Target Start/End: Complemental strand, 28235290 - 28235175
Alignment:
Q  87 cttcaccattagatccaacatccataagtgaatttacgtttaggaccctagattcgacaccatcagggttatcggcaacatgtaaaggaacatgattgat 186  Q
    |||||||||||||||||||||||| |  |||| |||| |||||||||||||| | || |||| |||||| ||||||||||| ||||||||||||||||||    
T  28235290 cttcaccattagatccaacatccacacatgaagttacttttaggaccctagacttgagaccaacagggtaatcggcaacatataaaggaacatgattgat 28235191  T
Q  187 cttgttagatacatat 202  Q
    |||||| |||||||||    
T  28235190 cttgtttgatacatat 28235175  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 28181842 - 28181740
Alignment:
Q  87 cttcaccattagatccaacatccataagtgaatttacgtttaggaccctagattcgacaccatcagggttatcggcaacatgtaaaggaacatgattgat 186  Q
    |||||||||||||||| ||||||| || ||||||||| |||||||||||||| |||| |||| ||  || ||||||||||| ||||||||||  ||||||    
T  28181842 cttcaccattagatccgacatccagaaatgaatttacttttaggaccctagactcgagaccaacatagtaatcggcaacatataaaggaacacaattgat 28181743  T
Q  187 ctt 189  Q
    |||    
T  28181742 ctt 28181740  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 190
Target Start/End: Original strand, 28297197 - 28297300
Alignment:
Q  87 cttcaccattagatccaacatccataagtgaatttacgtttaggaccctagattcgacaccatcagggttatcggcaacatgtaaaggaacatgattgat 186  Q
    |||||||||||||||  | ||||| || ||||||||| |||||||||||||| | || |||| | |||| ||||||||||| |||||||||| |||||||    
T  28297197 cttcaccattagatctgagatccagaaatgaatttacttttaggaccctagactggagaccaacggggtaatcggcaacatataaaggaacacgattgat 28297296  T
Q  187 cttg 190  Q
    ||||    
T  28297297 cttg 28297300  T

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Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 190
Target Start/End: Complemental strand, 28514876 - 28514773
Alignment:
Q  87 cttcaccattagatccaacatccataagtgaatttacgtttaggaccctagattcgacaccatcagggttatcggcaacatgtaaaggaacatgattgat 186  Q
    |||||||||||||||  | ||||| || ||||||||| |||||||||||||| | || |||| | |||| ||||||||||| |||||||||| |||||||    
T  28514876 cttcaccattagatctgagatccagaaatgaatttacttttaggaccctagactggagaccaacggggtaatcggcaacatataaaggaacacgattgat 28514777  T
Q  187 cttg 190  Q
    ||||    
T  28514776 cttg 28514773  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 28326199 - 28326112
Alignment:
Q  91 accattagatccaacatccataagtgaatttacgtttaggaccctagattcgacaccatcagggttatcggcaacatgtaaaggaaca 178  Q
    |||||||||||||||||| |||||||||||||| | ||||| |||||| |||| |||  |||||| ||| ||||||| ||||||||||    
T  28326199 accattagatccaacatctataagtgaatttacttctaggatcctagactcgagacctacagggtaatccgcaacatataaaggaaca 28326112  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 28228453 - 28228395
Alignment:
Q  22 caaagcatcaaaggttatttcaagtatctctaggatatcttcaatgggaatcctttcat 80  Q
    ||||||||||||| |||||| ||||||||||  ||||| || |||||||||||||||||    
T  28228453 caaagcatcaaagcttattttaagtatctctgtgatatttttaatgggaatcctttcat 28228395  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 28228333 - 28228277
Alignment:
Q  22 caaagcatcaaaggttatttcaagtatctctaggatatcttcaatgggaatcctttc 78  Q
    ||||| ||||||| |||||| ||||||||||| ||||| || |||||||||||||||    
T  28228333 caaagtatcaaagcttattttaagtatctctatgatatttttaatgggaatcctttc 28228277  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 28243489 - 28243421
Alignment:
Q  118 atttacgtttaggaccctagattcgacaccatcagggttatcggcaacatgtaaaggaacatgattgat 186  Q
    |||||| |||||||||||||| |||| |||| |||||| ||| ||||||| || ||||||| |||||||    
T  28243489 atttacttttaggaccctagactcgagaccaacagggtaatcagcaacatatagaggaacacgattgat 28243421  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 28503835 - 28503803
Alignment:
Q  91 accattagatccaacatccataagtgaatttac 123  Q
    |||||||||||||||||| ||||||||||||||    
T  28503835 accattagatccaacatctataagtgaatttac 28503803  T

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Target: scaffold0019 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 87 - 202
Target Start/End: Original strand, 57751 - 57866
Alignment:
Q  87 cttcaccattagatccaacatccataagtgaatttacgtttaggaccctagattcgacaccatcagggttatcggcaacatgtaaaggaacatgattgat 186  Q
    ||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||| |||| |||||| ||||||||||| ||||||||||||||||||    
T  57751 cttcaccattagatctaacatccagaagtgaatttacttttaggaccctagattcgataccaacagggtaatcggcaacatataaaggaacatgattgat 57850  T
Q  187 cttgttagatacatat 202  Q
    ||||||||||||||||    
T  57851 cttgttagatacatat 57866  T

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Target: scaffold0019; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 57095 - 57153
Alignment:
Q  22 caaagcatcaaaggttatttcaagtatctctaggatatcttcaatgggaatcctttcat 80  Q
    ||||||||||||| ||| || |||||||||| |||| | || |||||||||||||||||    
T  57095 caaagcatcaaagcttactttaagtatctcttggatctttttaatgggaatcctttcat 57153  T

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