View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13361_low_2 (Length: 624)
Name: NF13361_low_2
Description: NF13361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13361_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 16 - 621
Target Start/End: Complemental strand, 9615147 - 9614542
Alignment:
| Q |
16 |
agtttcctggttctataaatattattcagtacaaaggagttctccacactcaatcaaattgcaattacaagcnnnnnnncttcttctaccttcatattta |
115 |
Q |
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| T |
9615147 |
agtttcctggttctataaatattattcagtacaaaggagttctccacactcaatcaaattgcaattacaagctttttttcttcttctaccttcatatcta |
9615048 |
T |
|
| Q |
116 |
ttgcgattacctcacaatggcctccaagttccctgctaacaacactgctgccaatcggtctgatcctgcaaattcaaactctgatttgctggactgctgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
9615047 |
ttgcgattacctcacaatggcctccaagttccctgctaacaacactgctgccaatcggtctgctcctgcaaattccaactctgatttgctggactgctgt |
9614948 |
T |
|
| Q |
216 |
ttggtgggcaggctgctgatgtctaaaccagttcactttaactcgtttcgtgatcgcatggctgaaatttggaaacctgaacgtaaggtcgaaatctcaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9614947 |
ttggtgggcaggctgctgatgtctaaaccagttcactttaactcgtttcgtgatcgcatggctgaaatttggaaacctgaacgtaaggtcgaaatctcaa |
9614848 |
T |
|
| Q |
316 |
taattgacaacaatcgcttcatgtttcagttctttcatcataaggacatggaacgtgtgattcgtactggtccttggctctttgataacttccctctagt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9614847 |
gaattgacaacaatcgcttcatgtttcagttctttcatcataaggacatggaacgtgtgattcgtactggtccttggctctttgataacttccctctagt |
9614748 |
T |
|
| Q |
416 |
gctgcagaaagtctccttcggtgatgacccaacaacctctccgatggacactattgagatgtgggttcaagctcacaaccttccctttggcttcatgacg |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9614747 |
gctgcagaaagtctccttcggtgatgacccaacaacctctccgttggacactattgagatgtgggttcaagctcacaaccttccctttggcttcatgaca |
9614648 |
T |
|
| Q |
516 |
gaatctatgggttttcttctcggcaatcaggttggtggtcttgttaagtatgatgcagagaataacttcggttcttggaggaggttcatgcgtctctgtg |
615 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9614647 |
gaatctatgggtattcttctcggcagtcaggttggtggtcttgttaagtatgatgcagagaataacttcggttcttggaggaggttcatgcgtctccgtg |
9614548 |
T |
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| Q |
616 |
ctgctc |
621 |
Q |
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||||| |
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| T |
9614547 |
ttgctc |
9614542 |
T |
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