View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13361_low_3 (Length: 572)
Name: NF13361_low_3
Description: NF13361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13361_low_3 |
 | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 33049742 - 33049978
Alignment:
| Q |
18 |
tgaggttcaacaaactgcaaacaaagatacgaagaagaaacatggaaatgcaatgtttctcattcactagtgtgtgaatagtgatatttttgagaagatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33049742 |
tgaggttcaacaaactgcaaacaaagatacgaagaagaaacatggaaatgcaatgtttctcattcactagtgtgtgaatagtgatatttttgagaagatt |
33049841 |
T |
|
| Q |
118 |
atgcgttgtgaaaatgcgaaagaaacttgagatacacttgagagattgtattatggatatgaaaaattgaagaaagtgaggcttcaagcattaagaaaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33049842 |
atgcgttgtgaaaatgcgaaagaaacttgagatacacttgagagattgtattatggatataaaaaattgaagaaagtgaggcttcaagcattaagaaaac |
33049941 |
T |
|
| Q |
218 |
aatacgagatgctgaatatggaggaaggtgaatatgtg |
255 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
33049942 |
aatacgagatg-tgaatatggaggatggtgaatatgtg |
33049978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 381 - 557
Target Start/End: Original strand, 33049975 - 33050167
Alignment:
| Q |
381 |
tgtggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagcact----------------gataggaacaaa |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33049975 |
tgtggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagcacatgaattgaggttaaccgataggaacaaa |
33050074 |
T |
|
| Q |
465 |
gaaaaatccaaaggttttgcattagatcaagctttgcaagctcaatatacaaataaaaggaaatacaagaaaggaaagaattattggaatgat |
557 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33050075 |
gaaaaatccaaaggttctgcattagatcaagctttgcaagctcaatatacaaataaaaggaaatgcaagaaaggaaagaattattggaatgat |
33050167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 106 - 451
Target Start/End: Original strand, 9504236 - 9504581
Alignment:
| Q |
106 |
tttgagaagattatgcgttgtgaaaatgcgaaagaaacttgagatacacttgagagattgtattatggatatgaaaaattgaagaaagtgaggcttcaag |
205 |
Q |
| |
|
||||||||||| |||| || ||||| | ||| || || || |||||| | |||| |||||||||||| ||| || |||||||| ||||| |||||| |
|
|
| T |
9504236 |
tttgagaagatcatgcattatgaaagcgtgaaggagacatgggatacattagagaaattgtattatggtgatggtaagttgaagaaggtgagacttcaac |
9504335 |
T |
|
| Q |
206 |
cattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatctagcaaatcagatgataagaaa |
305 |
Q |
| |
|
| || |||| ||| || || || ||| ||||| |||| |||| ||| ||||||||||||||||| || | ||||| |||||||||||| ||| || |
|
|
| T |
9504336 |
ctttgagaagacagtatgaagtgttgacaatggaagaagaagaatctgttagtcaatactttgataaggtgatcaatcttacaaatcagatgacaaggaa |
9504435 |
T |
|
| Q |
306 |
taatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgttgtggtcttagaagaatccaaagat |
405 |
Q |
| |
|
| ||| || ||||||| |||||||| | ||||||||||||| || || ||| ||||||||||||| ||||| |||| | |||| ||||| ||||| |
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|
| T |
9504436 |
tggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcaaaaccttaacatcaagatttgatcacattgtagtggccctagaggaatctaaagac |
9504535 |
T |
|
| Q |
406 |
ttggatgtgatgaagattgaagaacttcaagcaagccttgaagcac |
451 |
Q |
| |
|
|| ||| |||||||| || ||||| || | ||| |||||||||| |
|
|
| T |
9504536 |
ttagattctatgaagatagaggaactgcaggaaagtcttgaagcac |
9504581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 19 - 449
Target Start/End: Complemental strand, 28452559 - 28452125
Alignment:
| Q |
19 |
gaggttcaacaaactgcaaacaaagatacgaagaagaaacatggaaatgcaatgtttctcattcactagtgtgtgaatagtgatatttttgagaagatta |
118 |
Q |
| |
|
||||||||||||| || | | |||||| ||||||| ||| |||| || ||||||||||||||||||| |||| ||| ||| ||||| |||||||| | |
|
|
| T |
28452559 |
gaggttcaacaaattggacataaagatgcgaagaaaaaagatgggaaatcaatgtttctcattcactatggtgttaatgatgagattttggagaagatca |
28452460 |
T |
|
| Q |
119 |
tgcgttgtgaaaatgcgaaagaaacttgagatacacttgagagattgtattatggatatgaaaaattgaagaaagtgaggcttcaagcattaagaaaaca |
218 |
Q |
| |
|
||| |||||||||||||| |||||||||||||| || |||| ||||||| |||| ||| ||| |||||||| ||| | |||||||||||||| | ||| |
|
|
| T |
28452459 |
tgcactgtgaaaatgcgaaggaaacttgagatactattaagaggttgtattctggagatggaaagttgaagaaggtgggacttcaagcattaaggagaca |
28452360 |
T |
|
| Q |
219 |
atacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatctagcaaatcagatgataagaaataatgatacaatc |
318 |
Q |
| |
|
||| | || || |||| |||||||||| | |||| | || ||| |||| ||| | ||||| ||||||| || | ||| ||| || | || |
|
|
| T |
28452359 |
ataaaaattgttgtccatggcagaaggtgaatcagcgagtaagtattttaataatctgataaatcttacaaatcaaataaaaaggaattgagacatcatt |
28452260 |
T |
|
| Q |
319 |
actgaattgatgaagtta----gaaaaggttctcagaattttgacaccaagatttgatcatattgttgtggtcttagaagaatccaaagatttggatgtg |
414 |
Q |
| |
|
||| ||||||||| || || ||||| |||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28452259 |
gttgatttgatgaagatatatagagaaggtaatcagaaccttgacaccaaggtttgatcatattgttgtagtcttagaagaatccaaagatttggatgtg |
28452160 |
T |
|
| Q |
415 |
atgaagattgaagaacttcaagcaagccttgaagc |
449 |
Q |
| |
|
|| |||||||||||| | || ||||| |||||||| |
|
|
| T |
28452159 |
atcaagattgaagaattgcaggcaagtcttgaagc |
28452125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 184 - 451
Target Start/End: Complemental strand, 45504263 - 45503996
Alignment:
| Q |
184 |
ttgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatc |
283 |
Q |
| |
|
|||||||| ||||| |||||||| || |||| ||| || || || ||| ||||| |||| |||||||| ||||||||||||||||| || | |||| |
|
|
| T |
45504263 |
ttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaagaatatgttagtcaatactttgataaggtgatcaatc |
45504164 |
T |
|
| Q |
284 |
tagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgttgt |
383 |
Q |
| |
|
|| |||||||||||||||| ||| ||| || ||||||| |||||||| | |||||||||||||||| || ||| ||||||||||||| ||||| || |
|
|
| T |
45504163 |
taacaaatcagatgataaggaatggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcagaaccttaacatcaagatttgatcacattgtagt |
45504064 |
T |
|
| Q |
384 |
ggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagcac |
451 |
Q |
| |
|
|| | |||| ||||| ||||| || ||| |||||||| || ||||| || ||||| |||||||||| |
|
|
| T |
45504063 |
ggccctagaggaatctaaagacttagattctatgaagatagaggaactgcaggcaagtcttgaagcac |
45503996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 184 - 451
Target Start/End: Complemental strand, 45496521 - 45496254
Alignment:
| Q |
184 |
ttgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatc |
283 |
Q |
| |
|
|||||||| ||||| |||||||| || |||| ||| || || || ||| ||||| |||| |||||||| ||||||||||||||||| || | |||| |
|
|
| T |
45496521 |
ttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaagaatatgttagtcaatactttgataaggtgatcaatc |
45496422 |
T |
|
| Q |
284 |
tagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgttgt |
383 |
Q |
| |
|
|| |||||||||||||||| ||| ||| || ||||||| |||||||| | |||||||||||||||| || ||| ||||||||||||| ||||| || |
|
|
| T |
45496421 |
taacaaatcagatgataaggaatggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcagaaccttaacatcaagatttgatcacattgtagt |
45496322 |
T |
|
| Q |
384 |
ggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagcac |
451 |
Q |
| |
|
|| | |||| ||||| ||||| || ||| |||||||| || || || || ||||| |||||||||| |
|
|
| T |
45496321 |
ggccctagaggaatctaaagacttagattctatgaagatagaggagctgcaggcaagtcttgaagcac |
45496254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 184 - 451
Target Start/End: Complemental strand, 21793958 - 21793691
Alignment:
| Q |
184 |
ttgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatc |
283 |
Q |
| |
|
|||||||| ||||| |||||||| || |||| ||| || || || ||| ||||| |||| |||| ||| ||||||||||||||||| || | |||| |
|
|
| T |
21793958 |
ttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaagaatttgttagtcaatactttgataaggtgatcaatc |
21793859 |
T |
|
| Q |
284 |
tagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgttgt |
383 |
Q |
| |
|
| |||||||||||| ||| ||| ||| || ||||||| |||||||| | |||||||||||||||| || ||| ||||||||||||| ||||| || |
|
|
| T |
21793858 |
ttacaaatcagatgacaaggaatggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcagaaccttaacatcaagatttgatcacattgtagt |
21793759 |
T |
|
| Q |
384 |
ggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagcac |
451 |
Q |
| |
|
|| | |||| ||||| ||||| || ||| |||||||| || ||||| || ||||| |||||||||| |
|
|
| T |
21793758 |
ggccctagaggaatctaaagacttagattctatgaagatagaggaactgcaggcaagtcttgaagcac |
21793691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 184 - 451
Target Start/End: Original strand, 5984098 - 5984365
Alignment:
| Q |
184 |
ttgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatc |
283 |
Q |
| |
|
|||||||| ||||| |||||||| || |||| ||| || || || ||| ||||| |||| |||| ||| ||||||||||||||||| || | |||| |
|
|
| T |
5984098 |
ttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaagaatctgttagtcaatactttgataaggtgctcaatc |
5984197 |
T |
|
| Q |
284 |
tagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgttgt |
383 |
Q |
| |
|
| |||||||||||| ||| |||| ||| || ||||||| |||||||| | ||||| ||||||| || || ||| ||||||||||||| ||||| || |
|
|
| T |
5984198 |
ttacaaatcagatgacaaggaatagtgaaactgtcactgatgtgatgaaggtggaaaaagttctcataaccttaacatcaagatttgatcacattgtagt |
5984297 |
T |
|
| Q |
384 |
ggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagcac |
451 |
Q |
| |
|
|| | |||| ||||| ||||| || ||| |||||||| || ||||| || ||||| |||||||||| |
|
|
| T |
5984298 |
ggccctagaggaatctaaagacttagattctatgaagatagaggaactacatgcaagtcttgaagcac |
5984365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 181 - 451
Target Start/End: Complemental strand, 16847339 - 16847069
Alignment:
| Q |
181 |
aaattgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtga |
280 |
Q |
| |
|
||||||||||| ||||| || ||||| || |||| ||| || || || ||| ||||| |||| |||| ||| ||||||||||||||||| || | | |
|
|
| T |
16847339 |
aaattgaagaaggtgagactgcaagctttgagaagacattatgaagtgttgacaatggaagaagaagaatttgttagtcaatactttgataaggtgatca |
16847240 |
T |
|
| Q |
281 |
atctagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgt |
380 |
Q |
| |
|
|||| |||||||||||| ||| ||| ||| || ||||||| |||||||| | |||||||||||||||| || ||| ||| ||||||||| ||||| |
|
|
| T |
16847239 |
atcttacaaatcagatgacaaggaatggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcagaaccttaacatcaaaatttgatcacattgt |
16847140 |
T |
|
| Q |
381 |
tgtggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagcac |
451 |
Q |
| |
|
|||| | |||| ||||| |||||||| ||| |||||||| || || || |||||||| |||||||||| |
|
|
| T |
16847139 |
agtggccctagaggaatctaaagatttagattctatgaagatagaggagctgcaagcaagtcttgaagcac |
16847069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 247 - 374
Target Start/End: Original strand, 61808 - 61934
Alignment:
| Q |
247 |
gaatatgtgagtcaatactttgataaactggtgaatctagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttc |
346 |
Q |
| |
|
|||||||| ||||||||||||||||| || | ||||| |||||||||||| ||| ||| ||| || |||||||| |||||||| | |||||||||| |
|
|
| T |
61808 |
gaatatgttagtcaatactttgataaggtg-tcaatcttacaaatcagatgacaaggaatggtgaaactatcactgatgtgatgaaggtggaaaaggttc |
61906 |
T |
|
| Q |
347 |
tcagaattttgacaccaagatttgatca |
374 |
Q |
| |
|
||||||| ||||| ||||||||||||| |
|
|
| T |
61907 |
tcagaatcgtgacatcaagatttgatca |
61934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 451
Target Start/End: Complemental strand, 7500915 - 7500570
Alignment:
| Q |
106 |
tttgagaagattatgcgttgtgaaaatgcgaaagaaacttgagatacacttgagagattgtattatggatatgaaaaattgaagaaagtgaggcttcaag |
205 |
Q |
| |
|
||||||||||| |||| || ||||| |||||| || || || ||| || | |||| | |||||| ||| ||| || |||||||| ||||| ||||||| |
|
|
| T |
7500915 |
tttgagaagatcatgcattatgaaagtgcgaaggagacatgggatgcattagagaaactgtattctggtgatggtaagttgaagaaggtgagacttcaag |
7500816 |
T |
|
| Q |
206 |
cattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatctagcaaatcagatgataagaaa |
305 |
Q |
| |
|
| || |||| ||| || || || ||| ||||| ||| |||| ||| ||||||||||||||||| || | ||||| |||||||||||| ||| || |
|
|
| T |
7500815 |
ctttgagaagacagtatgaagtgttgacaatggaataagaagaatttgttagtcaatactttgataaggtgatcaatcttacaaatcagatgacaaggaa |
7500716 |
T |
|
| Q |
306 |
taatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgttgtggtcttagaagaatccaaagat |
405 |
Q |
| |
|
| ||| | |||||| |||||||| | |||||||||||||||| || ||| ||||||||||||| ||||| |||| | ||| ||||| ||||| |
|
|
| T |
7500715 |
tggtgaaattgccactgatgtgatgaaggtggaaaaggttctcagaaccttaacatcaagatttgatcacattgtagtggccctaggggaatctaaagac |
7500616 |
T |
|
| Q |
406 |
ttggatgtgatgaagattgaagaacttcaagcaagccttgaagcac |
451 |
Q |
| |
|
|| ||| | |||||| || ||||| |||||||| |||||||||| |
|
|
| T |
7500615 |
ttagattctacgaagatagaggaactgcaagcaagtcttgaagcac |
7500570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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