View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13361_low_6 (Length: 389)

Name: NF13361_low_6
Description: NF13361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13361_low_6
NF13361_low_6
[»] chr1 (30 HSPs)
chr1 (118-372)||(37317383-37317641)
chr1 (24-71)||(40054949-40054996)
chr1 (24-78)||(44808766-44808820)
chr1 (23-69)||(47458888-47458934)
chr1 (24-70)||(49982455-49982501)
chr1 (23-64)||(23582133-23582174)
chr1 (24-69)||(43916346-43916391)
chr1 (23-71)||(41568804-41568852)
chr1 (23-70)||(23539941-23539988)
chr1 (23-70)||(50533903-50533950)
chr1 (24-71)||(51004788-51004835)
chr1 (24-82)||(1845060-1845118)
chr1 (24-70)||(7435875-7435921)
chr1 (23-69)||(34410950-34410996)
chr1 (23-69)||(39084710-39084756)
chr1 (23-69)||(40868134-40868180)
chr1 (25-70)||(17203109-17203154)
chr1 (21-69)||(32912211-32912259)
chr1 (23-63)||(51873280-51873320)
chr1 (23-70)||(5957255-5957302)
chr1 (24-71)||(39871383-39871430)
chr1 (23-69)||(5360202-5360248)
chr1 (23-69)||(46283133-46283179)
chr1 (24-69)||(4156142-4156187)
chr1 (23-64)||(35533878-35533919)
chr1 (33-70)||(38207528-38207565)
chr1 (24-69)||(45650369-45650414)
chr1 (23-60)||(48313316-48313353)
chr1 (23-71)||(12105158-12105205)
chr1 (23-71)||(12838130-12838178)
[»] chr8 (19 HSPs)
chr8 (23-69)||(5982184-5982230)
chr8 (24-70)||(12632903-12632949)
chr8 (22-68)||(28886041-28886087)
chr8 (24-69)||(31893333-31893378)
chr8 (27-71)||(5215320-5215364)
chr8 (23-63)||(43332104-43332144)
chr8 (23-63)||(44309926-44309966)
chr8 (24-67)||(30777274-30777317)
chr8 (24-67)||(34520932-34520975)
chr8 (24-70)||(23870267-23870313)
chr8 (27-69)||(44636921-44636963)
chr8 (23-64)||(2879936-2879977)
chr8 (23-71)||(34057827-34057875)
chr8 (24-71)||(9508855-9508902)
chr8 (24-71)||(32887664-32887711)
chr8 (23-69)||(5273410-5273456)
chr8 (22-64)||(12801465-12801507)
chr8 (24-70)||(38764737-38764783)
chr8 (24-69)||(41592-41637)
[»] chr4 (32 HSPs)
chr4 (24-70)||(34584181-34584227)
chr4 (22-70)||(27950257-27950305)
chr4 (23-70)||(48207438-48207485)
chr4 (23-70)||(54178780-54178827)
chr4 (24-70)||(21722554-21722600)
chr4 (23-69)||(32570728-32570774)
chr4 (24-69)||(19527085-19527130)
chr4 (24-69)||(52323966-52324011)
chr4 (21-65)||(25607694-25607738)
chr4 (24-71)||(4491217-4491264)
chr4 (24-71)||(19595293-19595340)
chr4 (24-67)||(39103539-39103582)
chr4 (24-71)||(49286686-49286733)
chr4 (23-69)||(1605590-1605636)
chr4 (27-69)||(3690877-3690919)
chr4 (30-68)||(12756370-12756408)
chr4 (24-70)||(22789581-22789627)
chr4 (24-66)||(30168101-30168143)
chr4 (24-69)||(595296-595341)
chr4 (23-64)||(17281779-17281820)
chr4 (23-64)||(17370281-17370322)
chr4 (33-70)||(34927101-34927138)
chr4 (24-69)||(39412169-39412214)
chr4 (23-70)||(26118114-26118160)
chr4 (24-70)||(6806985-6807031)
chr4 (23-69)||(24566367-24566413)
chr4 (35-69)||(43349052-43349086)
chr4 (24-69)||(31296530-31296575)
chr4 (24-61)||(53973464-53973501)
chr4 (23-63)||(5474011-5474051)
chr4 (25-69)||(29582329-29582372)
chr4 (23-71)||(30060528-30060575)
[»] scaffold0271 (1 HSPs)
scaffold0271 (24-69)||(17022-17067)
[»] chr5 (21 HSPs)
chr5 (25-70)||(39979706-39979751)
chr5 (23-69)||(6335751-6335797)
chr5 (23-69)||(13593281-13593327)
chr5 (24-70)||(39939032-39939078)
chr5 (24-69)||(5512682-5512727)
chr5 (23-63)||(12336575-12336615)
chr5 (25-69)||(31588597-31588641)
chr5 (23-70)||(2011054-2011101)
chr5 (24-71)||(5140667-5140714)
chr5 (24-71)||(5204615-5204662)
chr5 (23-70)||(9499762-9499809)
chr5 (24-71)||(40756539-40756586)
chr5 (23-69)||(4039469-4039515)
chr5 (24-70)||(7080472-7080518)
chr5 (33-70)||(4429790-4429827)
chr5 (30-71)||(23690499-23690540)
chr5 (23-69)||(16602360-16602406)
chr5 (28-70)||(28205138-28205180)
chr5 (23-69)||(36410267-36410313)
chr5 (32-70)||(40524083-40524121)
chr5 (24-69)||(34901657-34901702)
[»] chr7 (20 HSPs)
chr7 (24-71)||(21919686-21919733)
chr7 (24-70)||(42584123-42584169)
chr7 (22-63)||(40856544-40856585)
chr7 (25-69)||(22639367-22639411)
chr7 (23-70)||(19345972-19346019)
chr7 (24-71)||(31743663-31743710)
chr7 (24-70)||(11640655-11640701)
chr7 (24-70)||(27897223-27897269)
chr7 (24-70)||(29688923-29688969)
chr7 (23-69)||(45701031-45701077)
chr7 (23-69)||(49079614-49079660)
chr7 (24-69)||(5215386-5215431)
chr7 (23-71)||(2932574-2932622)
chr7 (23-71)||(27567158-27567206)
chr7 (24-68)||(32823468-32823512)
chr7 (23-70)||(38882817-38882864)
chr7 (22-64)||(27800033-27800075)
chr7 (32-69)||(23182390-23182427)
chr7 (24-69)||(48460251-48460296)
chr7 (23-71)||(26605054-26605101)
[»] chr3 (28 HSPs)
chr3 (23-70)||(4521268-4521315)
chr3 (23-70)||(20199708-20199755)
chr3 (23-70)||(48795438-48795485)
chr3 (24-70)||(29385044-29385090)
chr3 (24-69)||(29698322-29698367)
chr3 (28-69)||(29815494-29815535)
chr3 (23-66)||(5335366-5335409)
chr3 (23-70)||(24397744-24397791)
chr3 (23-70)||(39541031-39541078)
chr3 (23-66)||(47175829-47175872)
chr3 (23-69)||(35375511-35375557)
chr3 (24-66)||(51996422-51996464)
chr3 (24-69)||(32121899-32121944)
chr3 (24-69)||(38297231-38297276)
chr3 (24-69)||(43903434-43903479)
chr3 (24-69)||(52058514-52058559)
chr3 (24-68)||(41982391-41982435)
chr3 (22-69)||(14998147-14998194)
chr3 (24-67)||(15804624-15804667)
chr3 (23-70)||(36789886-36789933)
chr3 (23-69)||(26884973-26885018)
chr3 (23-69)||(31185430-31185476)
chr3 (25-70)||(36220769-36220813)
chr3 (24-65)||(52776453-52776494)
chr3 (36-68)||(3732246-3732278)
chr3 (22-70)||(32636987-32637034)
chr3 (23-71)||(37520700-37520747)
chr3 (23-67)||(47746190-47746233)
[»] chr2 (23 HSPs)
chr2 (23-70)||(28318040-28318087)
chr2 (22-69)||(45690499-45690546)
chr2 (24-70)||(8333890-8333936)
chr2 (23-69)||(38073106-38073152)
chr2 (24-70)||(41555430-41555476)
chr2 (31-70)||(11088594-11088633)
chr2 (23-69)||(11986185-11986231)
chr2 (23-69)||(25740347-25740393)
chr2 (24-69)||(34188896-34188941)
chr2 (32-69)||(37781866-37781903)
chr2 (23-71)||(33429493-33429541)
chr2 (23-70)||(2859358-2859405)
chr2 (33-68)||(12002715-12002750)
chr2 (23-70)||(12182919-12182966)
chr2 (23-70)||(32401078-32401124)
chr2 (23-69)||(42640850-42640896)
chr2 (27-69)||(43359467-43359509)
chr2 (38-71)||(5819690-5819723)
chr2 (24-69)||(15362469-15362514)
chr2 (24-69)||(21404198-21404242)
chr2 (24-69)||(38030557-38030602)
chr2 (23-71)||(40287704-40287752)
chr2 (23-67)||(45157875-45157918)
[»] chr6 (19 HSPs)
chr6 (24-70)||(10965985-10966031)
chr6 (23-69)||(19474032-19474078)
chr6 (23-64)||(14872332-14872373)
chr6 (23-72)||(24151121-24151170)
chr6 (23-63)||(229817-229857)
chr6 (21-67)||(16893256-16893302)
chr6 (24-69)||(1705967-1706012)
chr6 (24-69)||(10887809-10887854)
chr6 (24-69)||(14507982-14508027)
chr6 (31-71)||(1339741-1339781)
chr6 (23-63)||(21998974-21999014)
chr6 (23-70)||(6295738-6295785)
chr6 (23-70)||(6302548-6302595)
chr6 (23-70)||(8549562-8549608)
chr6 (24-71)||(21294151-21294198)
chr6 (23-69)||(242885-242930)
chr6 (23-69)||(14002398-14002444)
chr6 (24-70)||(24249167-24249213)
chr6 (24-69)||(2994322-2994367)
[»] scaffold0131 (1 HSPs)
scaffold0131 (25-69)||(11015-11059)
[»] scaffold0325 (1 HSPs)
scaffold0325 (23-63)||(1220-1260)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 118 - 372
Target Start/End: Original strand, 37317383 - 37317641
Alignment:
Q  118 ttagactcgataattagcgttgttgcacattcaaacaaataataacaatttgtttgtgcacgacaaaacattgt-----acactatttatttcatttcca 212  Q
    ||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||| | ||||||||||||||     |||||||||||||||||||||    
T  37317383 ttagactcgataattagcgttgttgcacaatcaaacaa-taataataatttgtttgtccgcgacaaaacattgttttgtacactatttatttcatttcca 37317481  T
Q  213 cttggctcttgaagcatgcgaaaatgatgatcaaaaatannnnnnncgtaaaactcataatcaaattttgacgccgacagtgacgcatatacatatatat 312  Q
    |||| ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37317482 cttgcctcttgaagcatgcgaaaatgatgatcaaaaatatttttttcgtaaaactcataatcaaattttgacgccgacagtgacgcatatacatatatat 37317581  T
Q  313 tacgtgtgccatttcgttaacaaggcaagtatcacgcacaaaattcatattcatattcat 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37317582 tacgtgtgccatttcgttaacaaggcaagtatcacgcacaaaattcatattcatattcat 37317641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 40054949 - 40054996
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  40054949 gagtaccggtacacctcaatttgtgaggtgtaccgtagaagttcccta 40054996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 44808766 - 44808820
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccctagtattaa 78  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||  |||||||    
T  44808766 gagtatcggtacacctcaatttgtgagatgtaccgtagaagttcccatgtattaa 44808820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 47458888 - 47458934
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||    
T  47458888 agagtatcggtacacctcaatttgtgaggtgtaccgtagaagctccc 47458934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 49982501 - 49982455
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||    
T  49982501 gagtatcggtacacctcaatttatgaggtgtaccgtagaagttccct 49982455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 23582174 - 23582133
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaag 64  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  23582174 agagtatcggtacacctcaatttgtgaggtgtaccgtagaag 23582133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 43916391 - 43916346
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  43916391 gagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccc 43916346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 41568804 - 41568852
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    ||||||||||||||||| || ||||||||||||||||||||| ||||||    
T  41568804 agagtatcggtacacctaaatttgtgaggtgtaccgtagaagctcccta 41568852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 23539988 - 23539941
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||| ||||||||||||| || ||||||||||||||||||||||||    
T  23539988 agagtaccggtacacctcaatttctgaggtgtaccgtagaagttccct 23539941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 50533950 - 50533903
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||||||| |||||||||| ||||||||||||||||||||| |||||    
T  50533950 agagtatcgatacacctcaatttgtgaggtgtaccgtagaagctccct 50533903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 51004835 - 51004788
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    ||||| ||||||||||||| |||||||||||||||||||| |||||||    
T  51004835 gagtaccggtacacctcaatttgtgaggtgtaccgtagaaattcccta 51004788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 1845118 - 1845060
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccctagtattaatggt 82  Q
    ||||| ||||||||||||| |||||||||| ||||||||||||||| | || |||||||    
T  1845118 gagtaccggtacacctcaatttgtgaggtgcaccgtagaagttccccattaataatggt 1845060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 7435875 - 7435921
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||| || |||||||||| |||||||||||||||||||||||||||    
T  7435875 gagtaccgatacacctcaatttgtgaggtgtaccgtagaagttccct 7435921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 34410996 - 34410950
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||||||||||||||||| |||||||||||||| |||||| ||||    
T  34410996 agagtatcggtacacctcaatttgtgaggtgtaccatagaagctccc 34410950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 39084756 - 39084710
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||||||| |||||||||| ||||||||||||||||||||| ||||    
T  39084756 agagtatcgatacacctcaatttgtgaggtgtaccgtagaagctccc 39084710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 40868180 - 40868134
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||||||||||||||||| || |||||||||||||||||| ||||    
T  40868180 agagtatcggtacacctcaatttatgaggtgtaccgtagaagctccc 40868134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 17203109 - 17203154
Alignment:
Q  25 agtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||||||||||||||| || |||||||||||||||||| |||||    
T  17203109 agtatcggtacacctcaatttatgaggtgtaccgtagaagctccct 17203154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 32912259 - 32912211
Alignment:
Q  21 tgagagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||||| || |||||||||| ||||||||||||| ||||||||||||    
T  32912259 tgagagtaccgatacacctcaatttgtgaggtgtactgtagaagttccc 32912211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 51873320 - 51873280
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaa 63  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  51873320 agagtatctgtacacctcaatttgtgaggtgtaccgtagaa 51873280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 5957302 - 5957255
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||||||||||||||||| ||||||||||| || |||||| |||||    
T  5957302 agagtatcggtacacctcaatttgtgaggtgtgccatagaagctccct 5957255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 39871430 - 39871383
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    ||||||||||||||||||| ||||||| | ||||||||||| ||||||    
T  39871430 gagtatcggtacacctcaatttgtgagatctaccgtagaagctcccta 39871383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 5360248 - 5360202
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||||| | |||||||||| ||||||||||||||||||||| ||||    
T  5360248 agagtattgatacacctcaatttgtgaggtgtaccgtagaagctccc 5360202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 46283133 - 46283179
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||||||| ||||||| || ||||||||||||||||||||| ||||    
T  46283133 agagtatcgatacacctaaatttgtgaggtgtaccgtagaagctccc 46283179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 4156142 - 4156187
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| ||||||||  ||| ||||||||||||||||||||||||||    
T  4156142 gagtaccggtacactccaatttgtgaggtgtaccgtagaagttccc 4156187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 35533919 - 35533878
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaag 64  Q
    ||||||||||||||||| || ||||||||||||| |||||||    
T  35533919 agagtatcggtacacctaaatttgtgaggtgtacggtagaag 35533878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 38207565 - 38207528
Alignment:
Q  33 tacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||||||| || ||||||||||||||||||||||||    
T  38207565 tacacctcaatttatgaggtgtaccgtagaagttccct 38207528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 45650369 - 45650414
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| ||||||| ||||| ||||||||| ||||||||||||||||    
T  45650369 gagtaccggtacatctcaatttgtgaggtataccgtagaagttccc 45650414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 48313353 - 48313316
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgta 60  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  48313353 agagtatcgatacacctcaatttgtgaggtgtaccgta 48313316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 12105205 - 12105158
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    |||||| ||||||||||||  ||||||| ||||||||||||||||||||    
T  12105205 agagtaccggtacacctcattttgtgag-tgtaccgtagaagttcccta 12105158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 12838130 - 12838178
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    |||||| ||||||||||||  |||| ||||||||| |||||||||||||    
T  12838130 agagtaccggtacacctcattttgttaggtgtaccttagaagttcccta 12838178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 5982230 - 5982184
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  5982230 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagctccc 5982184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 12632949 - 12632903
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  12632949 gagtatcggtacacctcaatttgtgaggtgtaccgtagaagttccct 12632903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 28886041 - 28886087
Alignment:
Q  22 gagagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcc 68  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  28886041 gagagtatcggtacacctcaatttgtgaggtgtaccgtagaagttcc 28886087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 31893378 - 31893333
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||    
T  31893378 gagtatcggtacacctcaatttgtgaggtgtaacgtagaagttccc 31893333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 5215364 - 5215320
Alignment:
Q  27 tatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||    
T  5215364 tatcggtacatctcaatttgtgaggtgtaccgtagaagttcccta 5215320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 43332104 - 43332144
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaa 63  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  43332104 agagtatcggtacacctcaatttgtgaggtgtaccgtagaa 43332144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 44309926 - 44309966
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaa 63  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  44309926 agagtatcggtacacctcaatttgtgaggtgtaccgtagaa 44309966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 30777317 - 30777274
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttc 67  Q
    ||||||||||||||||||| || |||||||||||||||||||||    
T  30777317 gagtatcggtacacctcaatttatgaggtgtaccgtagaagttc 30777274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 34520932 - 34520975
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttc 67  Q
    |||||||| |||||||||| ||||||||||||||||||||||||    
T  34520932 gagtatcgatacacctcaatttgtgaggtgtaccgtagaagttc 34520975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 23870313 - 23870267
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||| ||||||||| ||| |||||||||||||||||||||||||||    
T  23870313 gagtaccggtacaccccaatttgtgaggtgtaccgtagaagttccct 23870267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 44636963 - 44636921
Alignment:
Q  27 tatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  44636963 tatcggtacacctcaatttgtgaggtgtaccgtagaagctccc 44636921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 2879977 - 2879936
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaag 64  Q
    |||||||||||||||||||| || ||||||||||||||||||    
T  2879977 agagtatcggtacacctcaatttatgaggtgtaccgtagaag 2879936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 34057875 - 34057827
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    ||||||||| |||||||||| || |||||||||||||||||| ||||||    
T  34057875 agagtatcgatacacctcaatttatgaggtgtaccgtagaagctcccta 34057827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 9508902 - 9508855
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    ||||| |||||||||  || ||||||||||||||||||||||||||||    
T  9508902 gagtaccggtacaccctaatttgtgaggtgtaccgtagaagttcccta 9508855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 32887711 - 32887664
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    ||||| ||||||||||||| || |||| ||||||||||||||||||||    
T  32887711 gagtaccggtacacctcaatttatgagatgtaccgtagaagttcccta 32887664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 5273410 - 5273456
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| |||||||||||||| || |||||||||||||||||| ||||    
T  5273410 agagtctcggtacacctcaatttatgaggtgtaccgtagaagctccc 5273456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 12801465 - 12801507
Alignment:
Q  22 gagagtatcggtacacctcaacttgtgaggtgtaccgtagaag 64  Q
    ||||||| ||||||||||||| || ||||||||||||||||||    
T  12801465 gagagtaccggtacacctcaatttatgaggtgtaccgtagaag 12801507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 38764783 - 38764737
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||| || |||||||||| |||| ||||||||||||||||||||||    
T  38764783 gagtaccgatacacctcaatttgtaaggtgtaccgtagaagttccct 38764737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 41637 - 41592
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| ||||||||| ||| |||||||||||||||||||| |||||    
T  41637 gagtaccggtacaccccaatttgtgaggtgtaccgtagaaattccc 41592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 34584227 - 34584181
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  34584227 gagtatcggtacacctcaatttgtgaggtgtaccgtagaagttccct 34584181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 27950305 - 27950257
Alignment:
Q  22 gagagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  27950305 gagagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccct 27950257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 48207438 - 48207485
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||    
T  48207438 agagtatcggtacacctcaatttgtgaggtgtaccgtagaagctccct 48207485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 54178780 - 54178827
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||    
T  54178780 agagtatcggtacacctcaatttgtgaggtgtaccgtagaagctccct 54178827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 21722554 - 21722600
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||    
T  21722554 gagtatcggtacaccccaatttgtgaggtgtaccgtagaagttccct 21722600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 32570728 - 32570774
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||    
T  32570728 agagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccc 32570774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 19527085 - 19527130
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  19527085 gagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccc 19527130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 52324011 - 52323966
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||    
T  52324011 gagtatcggtacacctcaatttgtgaggtgtaccgcagaagttccc 52323966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 25607738 - 25607694
Alignment:
Q  21 tgagagtatcggtacacctcaacttgtgaggtgtaccgtagaagt 65  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||    
T  25607738 tgagagtaccggtacacctcaatttgtgaggtgtaccgtagaagt 25607694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 4491217 - 4491264
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    ||||| ||||||||||||| || |||||||||||||||||||||||||    
T  4491217 gagtaccggtacacctcaatttatgaggtgtaccgtagaagttcccta 4491264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 19595293 - 19595340
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    ||||||| ||||||||||| |||| |||||||||||||||||||||||    
T  19595293 gagtatcagtacacctcaatttgtaaggtgtaccgtagaagttcccta 19595340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 39103582 - 39103539
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttc 67  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||    
T  39103582 gagtaccggtacacctcaatttgtgaggtgtaccgtagaagttc 39103539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 49286733 - 49286686
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    ||||| ||||||||||||| ||||||||||||||||||||| ||||||    
T  49286733 gagtaccggtacacctcaatttgtgaggtgtaccgtagaagctcccta 49286686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 1605636 - 1605590
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||||||| || |||||| ||||||||||||||||||||||||||    
T  1605636 agagtatcggcacccctcaatttgtgaggtgtaccgtagaagttccc 1605590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 3690877 - 3690919
Alignment:
Q  27 tatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| |||||||||| ||||||||||||||||||||||||||    
T  3690877 tatcgatacacctcaatttgtgaggtgtaccgtagaagttccc 3690919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 12756370 - 12756408
Alignment:
Q  30 cggtacacctcaacttgtgaggtgtaccgtagaagttcc 68  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  12756370 cggtacacctcaatttgtgaggtgtaccgtagaagttcc 12756408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 22789627 - 22789581
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||| ||||||||| ||| |||||||||||||||||||||||||||    
T  22789627 gagtaccggtacaccccaatttgtgaggtgtaccgtagaagttccct 22789581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 30168143 - 30168101
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagtt 66  Q
    |||||||||||||| |||| |||||||||||||||||||||||    
T  30168143 gagtatcggtacacttcaatttgtgaggtgtaccgtagaagtt 30168101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 595341 - 595296
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| ||||||||||||| |||||||||||||||||||| |||||    
T  595341 gagtaccggtacacctcaatttgtgaggtgtaccgtagaaattccc 595296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 17281820 - 17281779
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaag 64  Q
    |||| ||||||||||||||| |||||||||||||||||||||    
T  17281820 agagaatcggtacacctcaatttgtgaggtgtaccgtagaag 17281779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 17370322 - 17370281
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaag 64  Q
    |||| ||||||||||||||| |||||||||||||||||||||    
T  17370322 agagaatcggtacacctcaatttgtgaggtgtaccgtagaag 17370281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 34927138 - 34927101
Alignment:
Q  33 tacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||||||| |||||||||||||||||||||||||||    
T  34927138 tacacctcaatttgtgaggtgtaccgtagaagttccct 34927101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 39412214 - 39412169
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||||||||||||| || |||||||||||||||||||| |||||    
T  39412214 gagtatcggtacaccttaatttgtgaggtgtaccgtagaaattccc 39412169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 26118114 - 26118160
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  26118114 agagtaccggtacacctcatcttgtga-gtgtaccgtagaagttccct 26118160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 6807031 - 6806985
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||||| ||||||||||| |||  ||||||||||||||||||||||    
T  6807031 gagtatccgtacacctcaatttgcaaggtgtaccgtagaagttccct 6806985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 24566413 - 24566367
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||| ||||||||||||  |||| |||||||||||||||||||||    
T  24566413 agagtaccggtacacctcattttgttaggtgtaccgtagaagttccc 24566367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 43349086 - 43349052
Alignment:
Q  35 cacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||||| ||||||||||||||||||||||||||    
T  43349086 cacctcaatttgtgaggtgtaccgtagaagttccc 43349052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 31296575 - 31296530
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| ||||||||||||| ||||||||||| ||||| ||||||||    
T  31296575 gagtaccggtacacctcaatttgtgaggtgtcccgtaaaagttccc 31296530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 53973501 - 53973464
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtag 61  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  53973501 gagtaccggtacacctcaatttgtgaggtgtaccgtag 53973464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 5474051 - 5474011
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaa 63  Q
    ||||||||||||||| |||| ||||||||||||| ||||||    
T  5474051 agagtatcggtacacatcaatttgtgaggtgtactgtagaa 5474011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 29582329 - 29582372
Alignment:
Q  25 agtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||| ||||||||||||| ||||||| ||||||||||||||||||    
T  29582329 agtaccggtacacctcaatttgtgag-tgtaccgtagaagttccc 29582372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 30060575 - 30060528
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    |||||||||||||||||||| ||  ||| ||||||||||||||||||||    
T  30060575 agagtatcggtacacctcaatttacgag-tgtaccgtagaagttcccta 30060528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 17022 - 17067
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  17022 gagtatcggtacacctcaatttgtgaggtgtaccgtagaagttccc 17067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 39979706 - 39979751
Alignment:
Q  25 agtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  39979706 agtatcggtacacctcaatttgtgaggtgtaccgtagaagttccct 39979751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 6335751 - 6335797
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||    
T  6335751 agagtatcggtacacctcaatttgtgaggtgtaccgtagaagctccc 6335797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 13593327 - 13593281
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||    
T  13593327 agagtatcggtacacctcaatttgtgaggtgtaccgtagaagctccc 13593281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 39939078 - 39939032
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||    
T  39939078 gagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccct 39939032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 5512727 - 5512682
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  5512727 gagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccc 5512682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 12336575 - 12336615
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaa 63  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  12336575 agagtatcggtacacctcaatttgtgaggtgtaccgtagaa 12336615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 31588597 - 31588641
Alignment:
Q  25 agtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||    
T  31588597 agtaccggtacacctcaatttgtgaggtgtaccgtagaagttccc 31588641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 2011101 - 2011054
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||||||||||||||||| ||||||||||||||||| ||| |||||    
T  2011101 agagtatcggtacacctcaatttgtgaggtgtaccgtaaaagctccct 2011054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 5140714 - 5140667
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  5140714 gagtaccggtacacctcaatttgtgaggtgtaccgtagaagtttccta 5140667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 5204662 - 5204615
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    ||||| || |||||||||| ||||||||||||||||||||||||||||    
T  5204662 gagtaccgatacacctcaatttgtgaggtgtaccgtagaagttcccta 5204615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 9499762 - 9499809
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||||||||||||||||| || |||||||||||||||||| |||||    
T  9499762 agagtatcggtacacctcaatttatgaggtgtaccgtagaagctccct 9499809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 40756586 - 40756539
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    ||||| || |||||||||| ||||||||||||||||||||||||||||    
T  40756586 gagtaccgatacacctcaatttgtgaggtgtaccgtagaagttcccta 40756539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 4039515 - 4039469
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||| |||||||||| || ||||||||||||||||||||||||||    
T  4039515 agagtaccggtacaccttaatttgtgaggtgtaccgtagaagttccc 4039469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 7080472 - 7080518
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||| ||||||||| ||| |||||||||||||||||||||||||||    
T  7080472 gagtaccggtacaccccaatttgtgaggtgtaccgtagaagttccct 7080518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 4429790 - 4429827
Alignment:
Q  33 tacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||||||| |||||||||||||||||||||||||||    
T  4429790 tacacctcaatttgtgaggtgtaccgtagaagttccct 4429827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 23690540 - 23690499
Alignment:
Q  30 cggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    ||||||||||||| || |||||||||||||||||||||||||    
T  23690540 cggtacacctcaatttttgaggtgtaccgtagaagttcccta 23690499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 16602406 - 16602360
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||||||| |||| ||||| ||||||||||||||||||||| ||||    
T  16602406 agagtatcgttacatctcaatttgtgaggtgtaccgtagaagctccc 16602360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 28205138 - 28205180
Alignment:
Q  28 atcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||    
T  28205138 atcggtacacctcaatttgtgagatgtaccgttgaagttccct 28205180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 36410267 - 36410313
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||||||||||||||| ||  |||||||||||||||||||| ||||    
T  36410267 agagtatcggtacaccttaatatgtgaggtgtaccgtagaagctccc 36410313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 40524121 - 40524083
Alignment:
Q  32 gtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  40524121 gtacaccccaatttgtgaggtgtaccgtagaagttccct 40524083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 34901702 - 34901657
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| ||||||||| ||| || |||||||||||||||||||||||    
T  34901702 gagtaccggtacaccccaatttatgaggtgtaccgtagaagttccc 34901657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 21919733 - 21919686
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  21919733 gagtaccggtacacctcaatttgtgaggtgtaccgtagaagttcccta 21919686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 42584123 - 42584169
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||    
T  42584123 gagtatcggtacacatcaatttgtgaggtgtaccgtagaagttccct 42584169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 40856585 - 40856544
Alignment:
Q  22 gagagtatcggtacacctcaacttgtgaggtgtaccgtagaa 63  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  40856585 gagagtatcggtacacctcaatttgtgaggtgtaccgtagaa 40856544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 22639411 - 22639367
Alignment:
Q  25 agtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||    
T  22639411 agtatcggtacacctcaatttgtgaggtgtaccgtagaagctccc 22639367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 19345972 - 19346019
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||||||||||||||||| || |||||||||||||||||| |||||    
T  19345972 agagtatcggtacacctcaatttatgaggtgtaccgtagaagctccct 19346019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 31743663 - 31743710
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||||||||    
T  31743663 gagtaccggtacaccacaatttgtgaggtgtaccgtagaagttcccta 31743710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 11640655 - 11640701
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||||||||||||||||| ||| ||||||||||||||||| |||||    
T  11640655 gagtatcggtacacctcaatttgcgaggtgtaccgtagaagctccct 11640701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 27897269 - 27897223
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||||||||||||||||| ||| ||||||||||||||||| |||||    
T  27897269 gagtatcggtacacctcaatttgcgaggtgtaccgtagaagctccct 27897223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 29688969 - 29688923
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||| ||||||||||||| || ||||||||||||||||||||||||    
T  29688969 gagtaccggtacacctcaatttatgaggtgtaccgtagaagttccct 29688923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 45701077 - 45701031
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||||||||||||||||| || |||||||||||||||||| ||||    
T  45701077 agagtatcggtacacctcaatttatgaggtgtaccgtagaagctccc 45701031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 49079614 - 49079660
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  49079614 agagtatcggtacacctcaatttgcgaggtgtaccgtagaagctccc 49079660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 5215386 - 5215431
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| ||||||||||||| |||||| |||||||||||||||||||    
T  5215386 gagtaccggtacacctcaatttgtgatgtgtaccgtagaagttccc 5215431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 2932622 - 2932574
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    |||||||||||||||||||| |||| |||| ||||||||||| ||||||    
T  2932622 agagtatcggtacacctcaatttgtaaggtttaccgtagaagctcccta 2932574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 27567206 - 27567158
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    |||||| |||||||||| || ||||||||||||||||| ||||||||||    
T  27567206 agagtaccggtacacctaaatttgtgaggtgtaccgtaaaagttcccta 27567158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 32823468 - 32823512
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcc 68  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||    
T  32823468 gagtatcggtacacctcaatttgtttggtgtaccgtagaagttcc 32823512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 38882864 - 38882817
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||| ||||||||||||  |||| ||||||||||||||||||||||    
T  38882864 agagtaccggtacacctcattttgttaggtgtaccgtagaagttccct 38882817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 27800075 - 27800033
Alignment:
Q  22 gagagtatcggtacacctcaacttgtgaggtgtaccgtagaag 64  Q
    ||||||| ||||||||||||| || ||||||||||||||||||    
T  27800075 gagagtaccggtacacctcaatttatgaggtgtaccgtagaag 27800033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 23182427 - 23182390
Alignment:
Q  32 gtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||||| || ||||||||||||||||||||||||||    
T  23182427 gtacaccttaatttgtgaggtgtaccgtagaagttccc 23182390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 48460296 - 48460251
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| ||||| ||||||| |||||||||||||| |||||||||||    
T  48460296 gagtaccggtatacctcaatttgtgaggtgtaccatagaagttccc 48460251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 26605101 - 26605054
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    |||||| ||||||||||||  ||||||| ||||||||||||||||||||    
T  26605101 agagtaccggtacacctcattttgtgag-tgtaccgtagaagttcccta 26605054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 4521315 - 4521268
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||    
T  4521315 agagtatcggtacacctcaatttgtgaggtgtaccgtagaagctccct 4521268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 20199708 - 20199755
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||    
T  20199708 agagtatcggtacacctcaatttgtgaggtgtaccgtagaagctccct 20199755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 48795485 - 48795438
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||    
T  48795485 agagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccct 48795438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 29385044 - 29385090
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||    
T  29385044 gagtatcggtacacctcaatttgtgaggtgtaccgtagaaattccct 29385090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 29698367 - 29698322
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  29698367 gagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccc 29698322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 29815494 - 29815535
Alignment:
Q  28 atcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  29815494 atcggtacacctcaatttgtgaggtgtaccgtagaagttccc 29815535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 5335409 - 5335366
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagtt 66  Q
    |||||||||||||||||||| ||||||| |||||||||||||||    
T  5335409 agagtatcggtacacctcaatttgtgagatgtaccgtagaagtt 5335366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 24397744 - 24397791
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||||||||||||||||| |||||||||||||| |||||| |||||    
T  24397744 agagtatcggtacacctcaatttgtgaggtgtaccatagaagctccct 24397791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 39541031 - 39541078
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||||||||||||||||| |||||||||| |||||||||| |||||    
T  39541031 agagtatcggtacacctcaatttgtgaggtgcaccgtagaagctccct 39541078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 47175829 - 47175872
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagtt 66  Q
    |||||||||||||||||||| || ||||||||||||||||||||    
T  47175829 agagtatcggtacacctcaatttatgaggtgtaccgtagaagtt 47175872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 35375557 - 35375511
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||| || |||||||||| ||||||||||||||||||||||||||    
T  35375557 agagtaccgatacacctcaatttgtgaggtgtaccgtagaagttccc 35375511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 51996464 - 51996422
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagtt 66  Q
    ||||||||||||||||||| |||||| ||||||||||||||||    
T  51996464 gagtatcggtacacctcaatttgtgatgtgtaccgtagaagtt 51996422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 32121944 - 32121899
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| ||||||||||||  ||||||||||||||||||||||||||    
T  32121944 gagtaccggtacacctcactttgtgaggtgtaccgtagaagttccc 32121899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 38297231 - 38297276
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||||    
T  38297231 gagtatcggtacacctcaatttgtaaggtgtactgtagaagttccc 38297276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 43903434 - 43903479
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| || |||||||||| ||||||||||||||||||||||||||    
T  43903434 gagtaccgatacacctcaatttgtgaggtgtaccgtagaagttccc 43903479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 52058559 - 52058514
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  52058559 gagtaccggtacaccccaatttgtgaggtgtaccgtagaagttccc 52058514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 41982435 - 41982391
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcc 68  Q
    ||||| ||||||||| ||| |||||||||||||||||||||||||    
T  41982435 gagtaccggtacaccccaatttgtgaggtgtaccgtagaagttcc 41982391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 14998194 - 14998147
Alignment:
Q  22 gagagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||||| || |||||| ||| ||||||||||||||||||||||||||    
T  14998194 gagagtaccgatacaccacaatttgtgaggtgtaccgtagaagttccc 14998147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 15804624 - 15804667
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttc 67  Q
    ||||||||||||||||||| |  |||||||||||||||||||||    
T  15804624 gagtatcggtacacctcaattgatgaggtgtaccgtagaagttc 15804667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 36789933 - 36789886
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||||||||||||| |||| || |||||||||||||||||| |||||    
T  36789933 agagtatcggtacacatcaatttatgaggtgtaccgtagaagctccct 36789886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 26885018 - 26884973
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||| |||||||||||| ||||||| |||||||||||||||||||    
T  26885018 agagtaccggtacacctcatcttgtga-gtgtaccgtagaagttccc 26884973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 31185476 - 31185430
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||||||||||||||||| |||||| |||||||||| ||| ||||    
T  31185476 agagtatcggtacacctcaatttgtgaagtgtaccgtaaaagctccc 31185430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 36220769 - 36220813
Alignment:
Q  25 agtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||||||||||||||  ||||||| |||||||||||||||||||    
T  36220769 agtatcggtacacctcactttgtgag-tgtaccgtagaagttccct 36220813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 52776494 - 52776453
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagt 65  Q
    ||||| ||||||||||||| || |||||||||||||||||||    
T  52776494 gagtaccggtacacctcaatttatgaggtgtaccgtagaagt 52776453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 3732278 - 3732246
Alignment:
Q  36 acctcaacttgtgaggtgtaccgtagaagttcc 68  Q
    ||||||| |||||||||||||||||||||||||    
T  3732278 acctcaatttgtgaggtgtaccgtagaagttcc 3732246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 32636987 - 32637034
Alignment:
Q  22 gagagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||||||||||||||||||  |||||| ||||||||||||| ||||||    
T  32636987 gagagtatcggtacacctcactttgtga-gtgtaccgtagaaattccct 32637034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 37520747 - 37520700
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    |||||| ||||||||||||  ||||||| ||||||||||||||||||||    
T  37520747 agagtaccggtacacctcattttgtgag-tgtaccgtagaagttcccta 37520700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 47746190 - 47746233
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttc 67  Q
    |||||||||||||||||||  |||||| |||||||||||||||||    
T  47746190 agagtatcggtacacctcattttgtga-gtgtaccgtagaagttc 47746233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 28318087 - 28318040
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||    
T  28318087 agagtatcggtacacctcaatttgtgaggtgtaccgtagaagctccct 28318040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 45690546 - 45690499
Alignment:
Q  22 gagagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  45690546 gagagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccc 45690499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 8333936 - 8333890
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||    
T  8333936 gagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccct 8333890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 38073152 - 38073106
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||    
T  38073152 agagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccc 38073106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 41555476 - 41555430
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||    
T  41555476 gagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccct 41555430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 11088594 - 11088633
Alignment:
Q  31 ggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  11088594 ggtacacctcaatttgtgaggtgtaccgtagaagttccct 11088633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 11986231 - 11986185
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||||| ||||||||||| ||||||||||||||||||||| ||||    
T  11986231 agagtatccgtacacctcaatttgtgaggtgtaccgtagaagctccc 11986185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 25740347 - 25740393
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||||||||||||||||| || |||||| ||||||||||||||||    
T  25740347 agagtatcggtacacctcaatttatgaggtataccgtagaagttccc 25740393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 34188896 - 34188941
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| ||||||||||||| |||| |||||||||||||||||||||    
T  34188896 gagtaccggtacacctcaatttgtaaggtgtaccgtagaagttccc 34188941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 37781903 - 37781866
Alignment:
Q  32 gtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  37781903 gtacacctcaatttgtgaggtgtaccgtagaagttccc 37781866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 33429493 - 33429541
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    |||||||||||||||||||| || |||||||||| ||||||| ||||||    
T  33429493 agagtatcggtacacctcaatttatgaggtgtactgtagaagctcccta 33429541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 2859405 - 2859358
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||| ||||||||||||| || |||| |||||||||||||||||||    
T  2859405 agagtaccggtacacctcaatttatgagatgtaccgtagaagttccct 2859358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 68
Target Start/End: Original strand, 12002715 - 12002750
Alignment:
Q  33 tacacctcaacttgtgaggtgtaccgtagaagttcc 68  Q
    |||||||||| |||||||||||||||||||||||||    
T  12002715 tacacctcaatttgtgaggtgtaccgtagaagttcc 12002750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 12182919 - 12182966
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||| ||||||||||||  |||| ||||||||||||||||||||||    
T  12182919 agagtaccggtacacctcattttgttaggtgtaccgtagaagttccct 12182966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 32401124 - 32401078
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||| |||||||||||| |||||||| |||||||||||||||||||    
T  32401124 agagtaccggtacacctcatcttgtgag-tgtaccgtagaagttccct 32401078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 42640896 - 42640850
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||| ||||| ||||||| ||||||||||| ||||||||||||||    
T  42640896 agagtaccggtatacctcaatttgtgaggtgtgccgtagaagttccc 42640850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 43359467 - 43359509
Alignment:
Q  27 tatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||||||||||| || ||||||||||||||||||||| ||||    
T  43359467 tatcggtacacctaaatttgtgaggtgtaccgtagaagctccc 43359509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 5819690 - 5819723
Alignment:
Q  38 ctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    ||||| ||||||||||||||||||||||||||||    
T  5819690 ctcaatttgtgaggtgtaccgtagaagttcccta 5819723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 15362514 - 15362469
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| ||||||||||||| || | |||||||||||||||||||||    
T  15362514 gagtaccggtacacctcaatttataaggtgtaccgtagaagttccc 15362469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 21404242 - 21404198
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||||    
T  21404242 gagtatcggtacacctcattttgtgag-tgtaccgtagaagttccc 21404198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 38030602 - 38030557
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| ||||||||| ||| |||||||||||| |||||||||||||    
T  38030602 gagtaccggtacaccccaatttgtgaggtgtatcgtagaagttccc 38030557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 40287752 - 40287704
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    ||||||||| |||||||||| || ||||||||||  |||||||||||||    
T  40287752 agagtatcgatacacctcaatttatgaggtgtacaatagaagttcccta 40287704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 45157875 - 45157918
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttc 67  Q
    |||||||||||||||||||  |||||| |||||||||||||||||    
T  45157875 agagtatcggtacacctcattttgtga-gtgtaccgtagaagttc 45157918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 10965985 - 10966031
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||    
T  10965985 gagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccct 10966031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 19474032 - 19474078
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||    
T  19474032 agagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccc 19474078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 14872373 - 14872332
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaag 64  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  14872373 agagtatcggtacacctcaatttgtgaggtgtaccgtagaag 14872332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 24151170 - 24151121
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccctag 72  Q
    ||||||||| |||||||||| ||||||||||||||||||||| |||||||    
T  24151170 agagtatcgatacacctcaatttgtgaggtgtaccgtagaagctccctag 24151121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 229857 - 229817
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaa 63  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  229857 agagtatcggtacacctcaatttgtgaggtgtaccgtagaa 229817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 16893256 - 16893302
Alignment:
Q  21 tgagagtatcggtacacctcaacttgtgaggtgtaccgtagaagttc 67  Q
    |||||||| ||||||||||||| |||||||||||||| |||||||||    
T  16893256 tgagagtaccggtacacctcaatttgtgaggtgtaccatagaagttc 16893302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 1705967 - 1706012
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| ||||||||||||| || |||||||||||||||||||||||    
T  1705967 gagtaccggtacacctcaatttatgaggtgtaccgtagaagttccc 1706012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 10887854 - 10887809
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| ||||||||||||| || |||||||||||||||||||||||    
T  10887854 gagtaccggtacacctcaatttatgaggtgtaccgtagaagttccc 10887809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 14507982 - 14508027
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| ||||||||||||| || |||||||||||||||||||||||    
T  14507982 gagtaccggtacacctcaatttatgaggtgtaccgtagaagttccc 14508027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 1339741 - 1339781
Alignment:
Q  31 ggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  1339741 ggtacacctcaatttgtgacgtgtaccgtagaagttcccta 1339781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 21998974 - 21999014
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaa 63  Q
    |||||||||||||||||||| || |||||||||||||||||    
T  21998974 agagtatcggtacacctcaatttatgaggtgtaccgtagaa 21999014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 6295738 - 6295785
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||| || |||||||||| ||||||||||||||||||||| |||||    
T  6295738 agagtaccgatacacctcaatttgtgaggtgtaccgtagaagctccct 6295785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 6302548 - 6302595
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||| || |||||||||| ||||||||||||||||||||| |||||    
T  6302548 agagtaccgatacacctcaatttgtgaggtgtaccgtagaagctccct 6302595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 8549608 - 8549562
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    |||||||||||||||||||  ||||||| |||||||||||||||||||    
T  8549608 agagtatcggtacacctcattttgtgag-tgtaccgtagaagttccct 8549562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 21294151 - 21294198
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttcccta 71  Q
    ||||| ||||||||||||| || ||||||||||||||| |||||||||    
T  21294151 gagtaccggtacacctcaatttatgaggtgtaccgtaggagttcccta 21294198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 242930 - 242885
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||||||    
T  242930 agagtatcggtacacctcatcttatga-gtgtaccgtagaagttccc 242885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 14002444 - 14002398
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||||||| |||||||||| || |||||||||||||||||| ||||    
T  14002444 agagtatcgatacacctcaatttctgaggtgtaccgtagaagctccc 14002398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 24249167 - 24249213
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccct 70  Q
    ||||| || |||||||||| |||| ||||||||||||||||||||||    
T  24249167 gagtaccgatacacctcaatttgtaaggtgtaccgtagaagttccct 24249213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 2994367 - 2994322
Alignment:
Q  24 gagtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    ||||| ||||||||||||| || |||||||||| ||||||||||||    
T  2994367 gagtaccggtacacctcaatttatgaggtgtactgtagaagttccc 2994322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 11015 - 11059
Alignment:
Q  25 agtatcggtacacctcaacttgtgaggtgtaccgtagaagttccc 69  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||    
T  11015 agtatcggtacacctcaatttgtgaggtgtaccgcagaagttccc 11059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 1260 - 1220
Alignment:
Q  23 agagtatcggtacacctcaacttgtgaggtgtaccgtagaa 63  Q
    |||||||||||||||||||| || | |||||||||||||||    
T  1260 agagtatcggtacacctcaatttataaggtgtaccgtagaa 1220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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