View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13363_high_10 (Length: 258)
Name: NF13363_high_10
Description: NF13363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13363_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 43069130 - 43068873
Alignment:
| Q |
16 |
cactctgcactctagctaaagaaccaaaagattgtgccttcccttgataaaacatagacaatcctctcctgcaaatgtcacaataaatatatagaattga |
115 |
Q |
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| T |
43069130 |
cactctgcactctagctaaagaaccaaaagattgtgccttcccttgataaaacatagacaatcctctcctgcaaatgtcacaataaatatatagaattga |
43069031 |
T |
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| Q |
116 |
attaaagtacaacaaaatattcatatagaatataa---------------------aaatgcatcatgcatgagaa----atattgcttacttcaaaggg |
190 |
Q |
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| T |
43069030 |
attaaagtacaacaaaatattcatatagaatataaaaattatatatatagcaaaaaaaatgcatcatgcatgagaaatatatattgcttacttcaaaggg |
43068931 |
T |
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| Q |
191 |
agatggttcataagttctgatagttcatataagggaccatttgaatgtgatgatgatg |
248 |
Q |
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| T |
43068930 |
agatggttcataagttctgatagttcatataagggaccatttgaatgtgatgatgatg |
43068873 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 34038218 - 34038268
Alignment:
| Q |
45 |
gattgtgccttcccttgataaaacatagacaatcctctcctgcaaatgtca |
95 |
Q |
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| T |
34038218 |
gattgagccttcccttgataaaacattgacaaccctctcctgcaaaagtca |
34038268 |
T |
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