View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13363_high_12 (Length: 242)

Name: NF13363_high_12
Description: NF13363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13363_high_12
NF13363_high_12
[»] chr5 (3 HSPs)
chr5 (74-225)||(1206756-1206889)
chr5 (24-71)||(13358439-13358486)
chr5 (11-65)||(30249354-30249408)
[»] scaffold0301 (1 HSPs)
scaffold0301 (12-73)||(8949-9010)
[»] chr6 (4 HSPs)
chr6 (10-73)||(18909125-18909188)
chr6 (11-75)||(22232579-22232643)
chr6 (11-73)||(3917570-3917632)
chr6 (28-73)||(14779974-14780019)
[»] chr3 (4 HSPs)
chr3 (11-74)||(35491055-35491118)
chr3 (10-73)||(17218096-17218159)
chr3 (24-63)||(37468058-37468097)
chr3 (33-73)||(44363482-44363522)
[»] chr7 (5 HSPs)
chr7 (11-73)||(44413284-44413346)
chr7 (10-74)||(43005639-43005703)
chr7 (11-74)||(18157299-18157362)
chr7 (11-73)||(46462067-46462129)
chr7 (22-73)||(23443600-23443651)
[»] chr4 (1 HSPs)
chr4 (11-74)||(8657547-8657610)
[»] chr2 (6 HSPs)
chr2 (11-73)||(24690113-24690175)
chr2 (11-73)||(24699464-24699526)
chr2 (10-74)||(18973130-18973194)
chr2 (24-74)||(40387037-40387087)
chr2 (33-73)||(17333892-17333932)
chr2 (11-63)||(19884407-19884459)
[»] chr1 (3 HSPs)
chr1 (11-73)||(51967950-51968012)
chr1 (11-73)||(15473850-15473912)
chr1 (30-74)||(44910963-44911007)
[»] scaffold1699 (1 HSPs)
scaffold1699 (11-73)||(1368-1430)
[»] scaffold0119 (1 HSPs)
scaffold0119 (12-73)||(40175-40236)
[»] scaffold0043 (1 HSPs)
scaffold0043 (11-71)||(33213-33273)


Alignment Details
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 74 - 225
Target Start/End: Complemental strand, 1206889 - 1206756
Alignment:
Q  74 gccagcaaaccctatttttctcagcaaagtaacaacttctcatctctacctttctctc--agtgttgttagcacataaagatgggtttttggaatagcga 171  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  | | |||||||||||||||||||||||                 
T  1206889 gccagcaaaccctatttttctcagcagagtaacaacttctcatctctacctttctctccaaatattgttagcacataaagatgggtt------------- 1206803  T
Q  172 ttgctcagatatgggtgaaattcttcccaaaacccgcgtatatttatcggtttt 225  Q
           |||||||||||||||||||||||||||||||||||||||||||||||    
T  1206802 -------gatatgggtgaaattcttcccaaaacccgcgtatatttatcggtttt 1206756  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 13358486 - 13358439
Alignment:
Q  24 tcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatga 71  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||    
T  13358486 tcagagggtgtatgaatgtagggtcttaggtcaaaaattgggatatga 13358439  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 30249408 - 30249354
Alignment:
Q  11 agaatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattggg 65  Q
    ||||||||||| |||||| ||||||||||||||||||| || |||||||||||||    
T  30249408 agaatattctgagtcagacggtgtatgaatgtaggttcctaggtcaaaaattggg 30249354  T

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Target: scaffold0301 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 9010 - 8949
Alignment:
Q  12 gaatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 73  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9010 gaatattatgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattaggatatgaca 8949  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 18909188 - 18909125
Alignment:
Q  10 aagaatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 73  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  18909188 aagaatattttgggtcagagggtgtatgaatgtaggttcttaggtcaaaaattggggtatgaca 18909125  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 22232579 - 22232643
Alignment:
Q  11 agaatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgacagc 75  Q
    |||||||| |||||||||||||||||||||||||||||||| || |||||||||| |||||||||    
T  22232579 agaatattatgggtcagagggtgtatgaatgtaggttcttaggttaaaaattggggtatgacagc 22232643  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 3917570 - 3917632
Alignment:
Q  11 agaatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 73  Q
    |||||||| ||||| |||||||||||||||||||||||||| || |||||||||| |||||||    
T  3917570 agaatattatgggttagagggtgtatgaatgtaggttcttaggttaaaaattggggtatgaca 3917632  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 14779974 - 14780019
Alignment:
Q  28 agggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 73  Q
    ||||||||||||||||||| |||| ||||||||||||  |||||||    
T  14779974 agggtgtatgaatgtaggtccttaggtcaaaaattggtgtatgaca 14780019  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 35491118 - 35491055
Alignment:
Q  11 agaatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgacag 74  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  35491118 agaatattctaggtcagagggtgtatgaatgtaggttcttaggtcaaaaattggggtatgacag 35491055  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 17218096 - 17218159
Alignment:
Q  10 aagaatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 73  Q
    |||| ||||| |||||||| || ||||||||||||| | ||| ||||||||||||| |||||||    
T  17218096 aagactattcagggtcagacggcgtatgaatgtagggtgttaggtcaaaaattggggtatgaca 17218159  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 37468097 - 37468058
Alignment:
Q  24 tcagagggtgtatgaatgtaggttcttaagtcaaaaattg 63  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  37468097 tcagagggtgtatgaatataagttcttaagtcaaaaattg 37468058  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 44363482 - 44363522
Alignment:
Q  33 gtatgaatgtaggttcttaagtcaaaaattgggatatgaca 73  Q
    ||||||||||||| |||||||||||||||| || |||||||    
T  44363482 gtatgaatgtaggatcttaagtcaaaaattagggtatgaca 44363522  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 44413284 - 44413346
Alignment:
Q  11 agaatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 73  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  44413284 agaatattatgggtcagagggtgtatgaatgtaggttcttaggtcaaaaattggggtatgaca 44413346  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 43005639 - 43005703
Alignment:
Q  10 aagaatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgacag 74  Q
    ||||||||| |||||||||||||||||||||||||||||||| || |||||||||| ||||||||    
T  43005639 aagaatattttgggtcagagggtgtatgaatgtaggttcttaggtaaaaaattggggtatgacag 43005703  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 18157299 - 18157362
Alignment:
Q  11 agaatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgacag 74  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||| |||| ||||||||    
T  18157299 agaatattatgggtcagagggtgtatgaatgtaggttcttaggtcaaaaactggggtatgacag 18157362  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 46462067 - 46462129
Alignment:
Q  11 agaatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 73  Q
    |||||||| | ||||| ||||||||||||| |||||||||| || |||||||||| |||||||    
T  46462067 agaatattataggtcaaagggtgtatgaatctaggttcttaggtaaaaaattggggtatgaca 46462129  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 23443651 - 23443600
Alignment:
Q  22 ggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 73  Q
    ||||| |||| ||||||||||||| ||||| ||||||||||||| |||||||    
T  23443651 ggtcaaagggcgtatgaatgtagggtcttaggtcaaaaattggggtatgaca 23443600  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 8657610 - 8657547
Alignment:
Q  11 agaatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgacag 74  Q
    |||||||| ||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  8657610 agaatattatgggtcaaagggtgtatgaatgtaggttcttaggtcaaaaattggggtatgacag 8657547  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 24690175 - 24690113
Alignment:
Q  11 agaatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 73  Q
    |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| |||||||    
T  24690175 agaatattatgggttagagggtgtatgaatgtaggttcttaggtcaaaaattggggtatgaca 24690113  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 24699526 - 24699464
Alignment:
Q  11 agaatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 73  Q
    |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| |||||||    
T  24699526 agaatattatgggttagagggtgtatgaatgtaggttcttaggtcaaaaattggggtatgaca 24699464  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 18973130 - 18973194
Alignment:
Q  10 aagaatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgacag 74  Q
    ||||||||| ||||||||| ||||||||||||||| |||||  ||||||||||||| ||||||||    
T  18973130 aagaatattatgggtcagatggtgtatgaatgtagattctttggtcaaaaattggggtatgacag 18973194  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 40387037 - 40387087
Alignment:
Q  24 tcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgacag 74  Q
    ||||||||||||| |||||||| ||||| || |||||||||| ||||||||    
T  40387037 tcagagggtgtataaatgtagggtcttaggtaaaaaattggggtatgacag 40387087  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 17333892 - 17333932
Alignment:
Q  33 gtatgaatgtaggttcttaagtcaaaaattgggatatgaca 73  Q
    ||||||||||||| ||||| ||||||||||||| |||||||    
T  17333892 gtatgaatgtagggtcttaggtcaaaaattggggtatgaca 17333932  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 19884407 - 19884459
Alignment:
Q  11 agaatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattg 63  Q
    |||||||| ||| ||| |||||||||||||||| ||| ||| |||||||||||    
T  19884407 agaatattttggatcatagggtgtatgaatgtaagtttttaggtcaaaaattg 19884459  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 51968012 - 51967950
Alignment:
Q  11 agaatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 73  Q
    |||||||| |||||||||||||||||||||||||||||||| || |||||||||| |||||||    
T  51968012 agaatattatgggtcagagggtgtatgaatgtaggttcttaggtaaaaaattggggtatgaca 51967950  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 15473850 - 15473912
Alignment:
Q  11 agaatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 73  Q
    |||||||| |||||||||||||||||||||||| | ||||| ||||||||||||| |||||||    
T  15473850 agaatattatgggtcagagggtgtatgaatgtatgctcttaggtcaaaaattggggtatgaca 15473912  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 44910963 - 44911007
Alignment:
Q  30 ggtgtatgaatgtaggttcttaagtcaaaaattgggatatgacag 74  Q
    ||||||||||||| |||||||| || ||||||||| |||||||||    
T  44910963 ggtgtatgaatgtgggttcttaggtaaaaaattggaatatgacag 44911007  T

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Target: scaffold1699 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1699
Description:

Target: scaffold1699; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 1368 - 1430
Alignment:
Q  11 agaatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 73  Q
    |||||||| ||||| |||||||||||||||||||||||||| || |||||||||| |||||||    
T  1368 agaatattatgggttagagggtgtatgaatgtaggttcttaggtaaaaaattggggtatgaca 1430  T

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Target: scaffold0119 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 40175 - 40236
Alignment:
Q  12 gaatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 73  Q
    ||||||||||| ||| |||||||||||||||||||||||| ||||||||||||  |||||||    
T  40175 gaatattctggatcaaagggtgtatgaatgtaggttcttaggtcaaaaattggagtatgaca 40236  T

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Target: scaffold0043 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 33213 - 33273
Alignment:
Q  11 agaatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatga 71  Q
    |||||||| |||||||||||||||||||||||||||||||| |||| || ||||| |||||    
T  33213 agaatattatgggtcagagggtgtatgaatgtaggttcttaggtcataagttggggtatga 33273  T

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