View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13363_high_4 (Length: 577)

Name: NF13363_high_4
Description: NF13363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13363_high_4
NF13363_high_4
[»] chr3 (3 HSPs)
chr3 (13-558)||(28833552-28834097)
chr3 (229-558)||(28824889-28825218)
chr3 (446-517)||(28818283-28818354)
[»] chr2 (1 HSPs)
chr2 (97-152)||(5948945-5949000)
[»] chr7 (1 HSPs)
chr7 (91-164)||(28820725-28820798)


Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 13 - 558
Target Start/End: Original strand, 28833552 - 28834097
Alignment:
Q  13 aatataacacgaccatttgtttatgtagctcggctaattgtgtatatctctgtgatagtatctgcgatagtatatcagctatagtttcgtatattatttg 112  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28833552 aatataacacgaccatttgtttatgtagctgggctaattgtgtatatctctgtgatagtatctgcgatagtatatcagctatagtttcgtatattatttg 28833651  T
Q  113 agtgaattaggatttacggcattacaagccatatatatagaattattgtccatatatgtgagttatactcaacaaattccataaatctttgagttagtgt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28833652 agtgaattaggatttacggcattacaagccatatatatagaattattgtccatatatgtgagttatactcaacaaattccataaatctttgagttagtgt 28833751  T
Q  213 caactgagatattgaacactttgaaaatgtgaatagattcgagcatgaaatattctacaatcaaacaacacaacatgggaatggtatattatgtgggaac 312  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||| |||||||| |||    
T  28833752 caactgagatattgaacactttgaaaatgtgaatagattcgagactgaaatattctacaatcaaacaacacaacctgggaatggtatgttatgtggaaac 28833851  T
Q  313 aaaactgcaaatgaaggcactgcatttggaacaattggacataaagtgctgatggatatccaattagcaacacctaaaattaaaggnnnnnnngcagcta 412  Q
    || |||||||| |||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||       |||||||    
T  28833852 aagactgcaaaagaaggcgctgcatttggaacaattggacaaaaagtgctaatggatatccaattagcaacacctaaaattaaaggtttttttgcagcta 28833951  T
Q  413 ctaagacacacgtgacacctggtggaaatatttcaatttatgccattgcacagtgtgctgaaacagtcactgaaagtggttgtttagattgtttgacagt 512  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28833952 ctaagacacaagtgacacctggtggaaatagttcaatttatgccattgcacagtgtgctgaaacagtcactgaaagtggttgtttagattgtttgacagt 28834051  T
Q  513 tggatacaacaacttgcaagcttgtcttcctaacagtgatggtaga 558  Q
    |||||||||||||||||||||||||||||||||||  |||||||||    
T  28834052 tggatacaacaacttgcaagcttgtcttcctaacacagatggtaga 28834097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 229 - 558
Target Start/End: Original strand, 28824889 - 28825218
Alignment:
Q  229 cactttgaaaatgtgaatagattcgagcatgaaatattctacaatcaaacaacacaacatgggaatggtatattatgtgggaacaaaactgcaaatgaag 328  Q
    ||||||||||||||||  || | ||||  ||||| ||||||| |||||||||| ||||| ||||||||| || |||||||||||||||||||||| ||||    
T  28824889 cactttgaaaatgtgataaggtacgagagtgaaagattctacgatcaaacaactcaacaagggaatggtgtaatatgtgggaacaaaactgcaaaagaag 28824988  T
Q  329 gcactgcatttggaacaattggacataaagtgctgatggatatccaattagcaacacctaaaattaaaggnnnnnnngcagctactaagacacacgtgac 428  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||       |||||||| |||||||| |||||    
T  28824989 gcactgcatttggaacaattggacacaaagtgctaatggatatccaattagcaacacctaaaatcaaaggtttttttgcagctaccaagacacaggtgac 28825088  T
Q  429 acctggtggaaatatttcaatttatgccattgcacagtgtgctgaaacagtcactgaaagtggttgtttagattgtttgacagttggatacaacaacttg 528  Q
    |||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||  ||||||    
T  28825089 acctggtggaaatagttcagtttatgccgttgcacagtgtgctgaaacagtcactgaaagtggttgtttagcttgtttggcagttggatacagtaacttg 28825188  T
Q  529 caagcttgtcttcctaacagtgatggtaga 558  Q
    ||| ||||||||||||||||||||||||||    
T  28825189 caaacttgtcttcctaacagtgatggtaga 28825218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 446 - 517
Target Start/End: Original strand, 28818283 - 28818354
Alignment:
Q  446 caatttatgccattgcacagtgtgctgaaacagtcactgaaagtggttgtttagattgtttgacagttggat 517  Q
    |||| ||||| |||||||| |||||||||||||||||| ||||||| |||||||||||  ||||||||||||    
T  28818283 caatctatgctattgcacaatgtgctgaaacagtcactcaaagtggctgtttagattgcctgacagttggat 28818354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 5948945 - 5949000
Alignment:
Q  97 tttcgtatattatttgagtgaattaggatttacggcattacaagccatatatatag 152  Q
    |||||||||||| |||||||||||||  ||||| |  |||||||||||||||||||    
T  5948945 tttcgtatattacttgagtgaattagtgtttacagtgttacaagccatatatatag 5949000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 28820798 - 28820725
Alignment:
Q  91 ctatagtttcgtatattatttgagtgaattaggatttacggcattacaagccatatatatagaattattgtcca 164  Q
    |||||||| | ||||||| |||||||||||||  ||||| |  |||||| |||||||||||| ||||| |||||    
T  28820798 ctatagttccatatattacttgagtgaattagagtttacagtgttacaaaccatatatatagtattatggtcca 28820725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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