View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13363_high_6 (Length: 454)
Name: NF13363_high_6
Description: NF13363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13363_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 9 - 438
Target Start/End: Original strand, 8259175 - 8259604
Alignment:
| Q |
9 |
caataatatagctgcataaattaacacaaaaccatatatatggattcgcttctaaaatccccaatcatggagaacttgaaggaagaaccatttcttatgg |
108 |
Q |
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| T |
8259175 |
caatcatatagctgcataaattaacacaaaaccatatatatggattcgcttctaaaatctccaatcatggagaacttgaaggaagaaccatttcttatgg |
8259274 |
T |
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| Q |
109 |
caatcatgttcatcgtaccactaatactcttgttgggtttagtgtcacgaatcctcaaaagaccaagatatccaccaggaccaatagggttacctgttat |
208 |
Q |
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| T |
8259275 |
caatcatgttcatcgtaccactaatactcttgttgggtttagtgtcacgaatcctcaaaagaccaagatatccaccaggaccaatagggttacctattat |
8259374 |
T |
|
| Q |
209 |
aggtaacatgttaatgatggaccaattaacccaccgtggtctagccaacttagccaaaaaatatggtggcatctttcacctacgcatgggattcctccac |
308 |
Q |
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| T |
8259375 |
aggtaacatgttaatgatggaccaattaacccaccgtggtctagccaacttagccaaaaaatatggtggcatctttcacctacgcatgggattcctccac |
8259474 |
T |
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| Q |
309 |
atggtagctatttccgacgcggatgccgcacgacaagttctgcaagttcaagacaacatcttttccaaccggccagcaactgtagccattaaatacctaa |
408 |
Q |
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| T |
8259475 |
atggtagctatttccgacgcggatgccgcacgacaagttctgcaagttcaagacaacatcttttccaaccggccagcaactgtagccattaaatacctaa |
8259574 |
T |
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| Q |
409 |
cttacgaccgtgctgacatggcgtttgctc |
438 |
Q |
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| T |
8259575 |
cttacgaccgtgctgacatggcgtttgctc |
8259604 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 438
Target Start/End: Complemental strand, 32316221 - 32316148
Alignment:
| Q |
365 |
catcttttccaaccggccagcaactgtagccattaaatacctaacttacgaccgtgctgacatggcgtttgctc |
438 |
Q |
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| T |
32316221 |
catcttttcaaatcggccagcgacggtagccataagttaccttacttataaccgtgctgacatggcgtttgctc |
32316148 |
T |
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