View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13363_high_8 (Length: 304)
Name: NF13363_high_8
Description: NF13363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13363_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 26188369 - 26188470
Alignment:
| Q |
185 |
aagcttaaaatgaataatgtgcatctctattgaatttacatagcttttactacattttgatatgttgcgatcgattgaataaacatctttttatgtttta |
284 |
Q |
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| T |
26188369 |
aagcttaaaatgaataatgtgcatctctattgaatttacatagcttttactacattttgatatgttgcgatcgattgaataaacatctttttatgtttta |
26188468 |
T |
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| Q |
285 |
gc |
286 |
Q |
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|| |
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| T |
26188469 |
gc |
26188470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 26188241 - 26188356
Alignment:
| Q |
1 |
tgtgatcaaatgacaaagtggagagtttttgtataaactataacctattttcatcactatgtttgtatatgaacaaaagaataattgaaagaataattca |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26188241 |
tgtgatcaaatgacaaagtggagagtttttttataaaccataacctattttcatcgctatgtttgtatatcaacaaaagaataattgaaagaataattca |
26188340 |
T |
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| Q |
101 |
ctcatactataatttt |
116 |
Q |
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|||||||||||||||| |
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| T |
26188341 |
ctcatactataatttt |
26188356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 9551565 - 9551594
Alignment:
| Q |
25 |
gtttttgtataaactataacctattttcat |
54 |
Q |
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| T |
9551565 |
gtttttgtataaactataacctattttcat |
9551594 |
T |
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