View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13363_low_13 (Length: 223)

Name: NF13363_low_13
Description: NF13363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13363_low_13
NF13363_low_13
[»] chr5 (1 HSPs)
chr5 (10-141)||(1206898-1207029)
[»] scaffold0092 (1 HSPs)
scaffold0092 (155-189)||(15380-15414)
[»] chr6 (4 HSPs)
chr6 (155-189)||(14185924-14185958)
chr6 (155-189)||(25492940-25492974)
chr6 (155-189)||(25505013-25505047)
chr6 (156-196)||(7244062-7244102)
[»] chr4 (1 HSPs)
chr4 (155-189)||(14437999-14438033)
[»] chr3 (4 HSPs)
chr3 (155-189)||(9553555-9553589)
chr3 (155-189)||(33573394-33573428)
chr3 (156-194)||(43099486-43099524)
chr3 (157-189)||(9523842-9523874)
[»] chr2 (2 HSPs)
chr2 (155-189)||(18971720-18971754)
chr2 (155-189)||(38083010-38083044)
[»] chr1 (4 HSPs)
chr1 (155-189)||(1957364-1957398)
chr1 (155-189)||(1963058-1963092)
chr1 (155-189)||(2415244-2415278)
chr1 (156-189)||(20610117-20610150)


Alignment Details
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 1207029 - 1206898
Alignment:
Q  10 aggcgcaaatacaaacacgccgtgtgcatcaacaaaccaagaacagtttttgacctcaattagtagtcaaaatggaccgtatactagggcaattattact 109  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  1207029 aggcgcaaatacaaacacgcagtgtgcatcaacaaaccaagaactgtttttgacctcaattagtggacaaaatggaccgtatactagggcaattattact 1206930  T
Q  110 ccataaaaataccacaacatctcatgtctcat 141  Q
    ||||||||||||||||||||||||||||||||    
T  1206929 ccataaaaataccacaacatctcatgtctcat 1206898  T

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Target: scaffold0092 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 15414 - 15380
Alignment:
Q  155 ggctattttattagcttttgactcacatattattt 189  Q
    |||||||| ||||||||||||||||||||||||||    
T  15414 ggctatttgattagcttttgactcacatattattt 15380  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 14185958 - 14185924
Alignment:
Q  155 ggctattttattagcttttgactcacatattattt 189  Q
    |||||||| ||||||||||||||||||||||||||    
T  14185958 ggctatttgattagcttttgactcacatattattt 14185924  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 25492940 - 25492974
Alignment:
Q  155 ggctattttattagcttttgactcacatattattt 189  Q
    |||||||| ||||||||||||||||||||||||||    
T  25492940 ggctatttgattagcttttgactcacatattattt 25492974  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 25505013 - 25505047
Alignment:
Q  155 ggctattttattagcttttgactcacatattattt 189  Q
    |||||||| ||||||||||||||||||||||||||    
T  25505013 ggctatttgattagcttttgactcacatattattt 25505047  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 7244062 - 7244102
Alignment:
Q  156 gctattttattagcttttgactcacatattatttaacaatt 196  Q
    |||||||||||||||||||||||||  ||||||| ||||||    
T  7244062 gctattttattagcttttgactcactaattatttcacaatt 7244102  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 14438033 - 14437999
Alignment:
Q  155 ggctattttattagcttttgactcacatattattt 189  Q
    |||||||| ||||||||||||||||||||||||||    
T  14438033 ggctatttgattagcttttgactcacatattattt 14437999  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 9553555 - 9553589
Alignment:
Q  155 ggctattttattagcttttgactcacatattattt 189  Q
    |||||||| ||||||||||||||||||||||||||    
T  9553555 ggctatttgattagcttttgactcacatattattt 9553589  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 33573428 - 33573394
Alignment:
Q  155 ggctattttattagcttttgactcacatattattt 189  Q
    |||||||| ||||||||||||||||||||||||||    
T  33573428 ggctatttgattagcttttgactcacatattattt 33573394  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 43099524 - 43099486
Alignment:
Q  156 gctattttattagcttttgactcacatattatttaacaa 194  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  43099524 gctatttgattagcttttgactcacatattatttcacaa 43099486  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 9523842 - 9523874
Alignment:
Q  157 ctattttattagcttttgactcacatattattt 189  Q
    |||||| ||||||||||||||||||||||||||    
T  9523842 ctatttgattagcttttgactcacatattattt 9523874  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 18971720 - 18971754
Alignment:
Q  155 ggctattttattagcttttgactcacatattattt 189  Q
    |||||||| ||||||||||||||||||||||||||    
T  18971720 ggctatttgattagcttttgactcacatattattt 18971754  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 38083010 - 38083044
Alignment:
Q  155 ggctattttattagcttttgactcacatattattt 189  Q
    |||||||| ||||||||||||||||||||||||||    
T  38083010 ggctatttgattagcttttgactcacatattattt 38083044  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 1957398 - 1957364
Alignment:
Q  155 ggctattttattagcttttgactcacatattattt 189  Q
    |||||||| ||||||||||||||||||||||||||    
T  1957398 ggctatttgattagcttttgactcacatattattt 1957364  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 1963092 - 1963058
Alignment:
Q  155 ggctattttattagcttttgactcacatattattt 189  Q
    |||||||| ||||||||||||||||||||||||||    
T  1963092 ggctatttgattagcttttgactcacatattattt 1963058  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 2415244 - 2415278
Alignment:
Q  155 ggctattttattagcttttgactcacatattattt 189  Q
    |||||||| ||||||||||||||||||||||||||    
T  2415244 ggctatttgattagcttttgactcacatattattt 2415278  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 20610117 - 20610150
Alignment:
Q  156 gctattttattagcttttgactcacatattattt 189  Q
    ||||||| ||||||||||||||||||||||||||    
T  20610117 gctatttgattagcttttgactcacatattattt 20610150  T

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