View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13363_low_3 (Length: 644)

Name: NF13363_low_3
Description: NF13363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13363_low_3
NF13363_low_3
[»] chr5 (2 HSPs)
chr5 (18-548)||(33541377-33541908)
chr5 (330-538)||(18571146-18571357)
[»] chr6 (14 HSPs)
chr6 (383-531)||(212955-213103)
chr6 (333-535)||(9170858-9171054)
chr6 (263-417)||(7041467-7041621)
chr6 (446-538)||(7029976-7030068)
chr6 (263-416)||(7025721-7025880)
chr6 (270-405)||(7046817-7046952)
chr6 (333-535)||(9159374-9159570)
chr6 (263-420)||(7012785-7012948)
chr6 (446-535)||(7012983-7013072)
chr6 (333-416)||(7029854-7029937)
chr6 (446-535)||(7025919-7026008)
chr6 (450-535)||(7041639-7041724)
chr6 (54-109)||(213329-213384)
chr6 (95-149)||(7025580-7025634)
[»] chr1 (10 HSPs)
chr1 (453-586)||(8814178-8814311)
chr1 (453-596)||(247022-247168)
chr1 (453-596)||(251206-251355)
chr1 (54-175)||(4428420-4428541)
chr1 (263-343)||(18991175-18991255)
chr1 (450-499)||(235374-235423)
chr1 (263-316)||(4428602-4428655)
chr1 (263-359)||(4439831-4439927)
chr1 (266-416)||(246841-246991)
chr1 (54-159)||(4439649-4439754)
[»] chr3 (19 HSPs)
chr3 (450-585)||(9494646-9494784)
chr3 (292-598)||(9343845-9344151)
chr3 (292-561)||(9448314-9448583)
chr3 (263-395)||(9494821-9494953)
chr3 (263-390)||(9432867-9432994)
chr3 (263-390)||(41985599-41985726)
chr3 (54-161)||(9432678-9432786)
chr3 (263-373)||(9407337-9407447)
chr3 (265-395)||(9695629-9695759)
chr3 (263-410)||(9402350-9402500)
chr3 (263-322)||(9425544-9425603)
chr3 (263-322)||(9617549-9617608)
chr3 (56-158)||(9343639-9343741)
chr3 (263-410)||(9420589-9420739)
chr3 (96-155)||(9329670-9329729)
chr3 (265-419)||(9336513-9336667)
chr3 (64-158)||(9448116-9448210)
chr3 (273-390)||(9646382-9646499)
chr3 (273-390)||(9655375-9655492)
[»] chr2 (2 HSPs)
chr2 (61-172)||(20694483-20694594)
chr2 (263-322)||(20694387-20694446)
[»] chr7 (2 HSPs)
chr7 (298-417)||(450102-450221)
chr7 (262-322)||(3695660-3695720)
[»] chr8 (1 HSPs)
chr8 (264-373)||(44688820-44688929)


Alignment Details
Target: chr5 (Bit Score: 496; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 18 - 548
Target Start/End: Original strand, 33541377 - 33541908
Alignment:
Q  18 ctaacaacataaaccaagcacaataaagctatatcaaatgcaggataacatactcagttacgaatgcagcttttgacgatccactctggaggctgcggga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33541377 ctaacaacataaaccaagcacaataaagctatatcaaatgcaggttaacatactcagttacgaatgcagcttttgacgatccactctggaggctgcggga 33541476  T
Q  118 acaagttgaaatattccggataatcggacaaaggtgaaagctgatgtttatccaagtccaagatacatcctgtagttgtactagtcaaagcccttgggcg 217  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  33541477 acaagttgaaatattccggataatcggacaaaggtgaaggctgatgtttatccaagtccaagatacatcctgtagttgtactagtcaaatgccttgggcg 33541576  T
Q  218 atggacaaatccgaagtgttgaaatgatgagaagacatttttcaaaaa-gatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaa 316  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33541577 atggacaaatccgaagtgttgaaatgatgggaagacatttttcaaaaaagaggacacaattacctttggcaacggacaaatcagaagcagatgcagaaaa 33541676  T
Q  317 ggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttaca 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33541677 ggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttaca 33541776  T
Q  417 ggattgtgaccagggaagccgatacgtgtacaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaa 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33541777 ggattgtgaccagggaagccgatacgtgtacaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaa 33541876  T
Q  517 ccaaagattcagccactaactgaacagtggag 548  Q
    ||||||||||||||||||||||||||||||||    
T  33541877 ccaaagattcagccactaactgaacagtggag 33541908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 330 - 538
Target Start/End: Original strand, 18571146 - 18571357
Alignment:
Q  330 cctaagaacaaaacaa---tatctcctaaactctttaacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttacaggattgtgac 426  Q
    ||||||||||||||||   |||| ||||||||| | || |||||||||| | |||||||||||| ||||||||| |||| ||||||||| ||||  |||     
T  18571146 cctaagaacaaaacaactgtatcccctaaactcgtcaatttcacccacttcttctccttctcatcaagcttaaagaaatcaatccttacgggatcatgat 18571245  T
Q  427 cagggaagccgatacgtgtacaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattc 526  Q
    ||| ||| |  | ||    ||| |||||||| ||  ||||||||| ||| |||| ||||||||| |||||||| | ||  |||||| |||||||||||||    
T  18571246 cagagaacctaacacccacacactcataaacgtcagctaacaacagatcgccctcgctctccaccaagaatttcatgttcccaccaacaaccaaagattc 18571345  T
Q  527 agccactaactg 538  Q
    | ||| ||||||    
T  18571346 atccattaactg 18571357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 8e-38; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 383 - 531
Target Start/End: Complemental strand, 213103 - 212955
Alignment:
Q  383 cttctcattaagcttaaacaaatgaatccttacaggattgtgaccagggaagccgatacgtgtacaatcataaacatccactaacaacaaatcacccttg 482  Q
    |||||||||||||||||||| |||||||||||||||||  ||| ||||||| ||  ||||| |||| ||||||||||| ||||||||||||||||||| |    
T  213103 cttctcattaagcttaaacacatgaatccttacaggatcatgatcagggaacccagtacgtatacactcataaacatctactaacaacaaatcaccctcg 213004  T
Q  483 ctctccactaagaatttgacgtctccaccaccaaccaaagattcagcca 531  Q
    ||||||||||||||||| | | |||||||| ||||||| | ||||||||    
T  213003 ctctccactaagaatttcatgcctccaccatcaaccaatggttcagcca 212955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 333 - 535
Target Start/End: Original strand, 9170858 - 9171054
Alignment:
Q  333 aagaacaaaacaatatctcctaaactctttaacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttacaggattgtgaccaggga 432  Q
    |||||||||||  |||| ||||||||| |||| |||||||||| | ||||||||||||||||||||||||||| ||||||||||||||      ||   |    
T  9170858 aagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcattaagcttaaacaaatcaatccttacaggat------cattaa 9170951  T
Q  433 agccgatacgtgtacaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccac 532  Q
       | ||||    |||||||||||| ||| ||||||||||||| |||| |||||||||||||||||| | ||  |||||||||||||||| |||||| ||    
T  9170952 gatcaatacaaagacaatcataaacgtccgctaacaacaaatctccctcgctctccactaagaatttcatgttcccaccaccaaccaaaggttcagcaac 9171051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 263 - 417
Target Start/End: Original strand, 7041467 - 7041621
Alignment:
Q  263 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttt 362  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||  |||| || |||||  |  | || |||||||||||  |||| ||||||||  |     
T  7041467 aaagatgacacaattccctttggcaacgcacaaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaactagtc 7041566  T
Q  363 aacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttacag 417  Q
    ||||||||||||| | |||||||||||||||| |||||||||| ||||| |||||    
T  7041567 aacttcacccacttcttctccttctcattaagtttaaacaaatcaatccatacag 7041621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 446 - 538
Target Start/End: Original strand, 7029976 - 7030068
Alignment:
Q  446 acaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactg 538  Q
    |||||||||||||||| ||||||||||||| |||| |||||||||||||||||| || | |||||||||||||||||  ||||||||||||||    
T  7029976 acaatcataaacatccgctaacaacaaatccccctcgctctccactaagaatttcacatttccaccaccaaccaaaggctcagccactaactg 7030068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 263 - 416
Target Start/End: Original strand, 7025721 - 7025880
Alignment:
Q  263 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtc--agccc----ctaagaacaaaacaatatctcctaaa 356  Q
    |||||||||| ||||||||||||||||  ||||||| |||||| | |||||||| |||||  |  | |||    | |||||||||||  |||||||||||    
T  7025721 aaagatgacagaattccctttggcaacacacaaatctgaagcacaagcagaaaacgaacataccaaccccaaccccaagaacaaaaccctatctcctaaa 7025820  T
Q  357 ctctttaacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttaca 416  Q
    ||| | ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||    
T  7025821 ctcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7025880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 270 - 405
Target Start/End: Original strand, 7046817 - 7046952
Alignment:
Q  270 acacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttca 369  Q
    ||||||||||||||||||||  ||||||| |||  ||| |||||||| ||||| |    ||| |||||||||||  |||| ||||||||| |||||||||    
T  7046817 acacaattccctttggcaacatacaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccctaaactcgttaacttca 7046916  T
Q  370 cccactccgtctccttctcattaagcttaaacaaat 405  Q
    |||||| | |||||||||||||||||||||||||||    
T  7046917 cccacttcttctccttctcattaagcttaaacaaat 7046952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 333 - 535
Target Start/End: Complemental strand, 9159570 - 9159374
Alignment:
Q  333 aagaacaaaacaatatctcctaaactctttaacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttacaggattgtgaccaggga 432  Q
    |||||||||||  |||| ||||||||| |||| |||||||||| | |||||||||| |||||||||||||||| ||||||||||||||      ||   |    
T  9159570 aagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcgttaagcttaaacaaatcaatccttacaggat------cattaa 9159477  T
Q  433 agccgatacgtgtacaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccac 532  Q
       | ||||    |||||||||| | |||  |||||||||||| |||| |||||||||||||||||| | ||  |||||||||||||||| |||||||||    
T  9159476 gatcaatactaagacaatcataagcctccgataacaacaaatctccctcgctctccactaagaattttatgttcccaccaccaaccaaaggttcagccac 9159377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 263 - 420
Target Start/End: Original strand, 7012785 - 7012948
Alignment:
Q  263 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtc--agccc----ctaagaacaaaacaatatctcctaaa 356  Q
    |||||||||| ||||||||||||||||  ||||||| |||||| | |||||||| |||||  |  | |||    | ||||||||||   |||||||||||    
T  7012785 aaagatgacagaattccctttggcaacacacaaatccgaagcacaggcagaaaacgaacataccaaccccaaccccaagaacaaaatcctatctcctaaa 7012884  T
Q  357 ctctttaacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttacaggat 420  Q
    ||  | ||||||||||||| | ||||||||||||||||||||||||||| ||| ||||||||||    
T  7012885 cttgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaattcttacaggat 7012948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 446 - 535
Target Start/End: Original strand, 7012983 - 7013072
Alignment:
Q  446 acaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaa 535  Q
    |||||||||||||||  |||||||||||||  ||| |||||||||||||||||| | ||| || ||||||||||||| ||||||||||||    
T  7012983 acaatcataaacatctgctaacaacaaatcctcctcgctctccactaagaatttcatgtccccgccaccaaccaaaggttcagccactaa 7013072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 333 - 416
Target Start/End: Original strand, 7029854 - 7029937
Alignment:
Q  333 aagaacaaaacaatatctcctaaactctttaacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttaca 416  Q
    |||||||||||  |||| || |||||| | ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||    
T  7029854 aagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7029937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 446 - 535
Target Start/End: Original strand, 7025919 - 7026008
Alignment:
Q  446 acaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaa 535  Q
    ||||| |||||||||| ||||||||||||| |||| |||||||||||||||||| | ||| || || |||| ||||| ||||||||||||    
T  7025919 acaattataaacatccgctaacaacaaatccccctcgctctccactaagaatttcatgtccccgccgccaatcaaaggttcagccactaa 7026008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 450 - 535
Target Start/End: Original strand, 7041639 - 7041724
Alignment:
Q  450 tcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaa 535  Q
    |||||||||||| ||||||||||||| |||||||| ||| ||||||||||   || ||||| ||||||||||| ||||||||||||    
T  7041639 tcataaacatccgctaacaacaaatctcccttgctttccgctaagaatttcttgtttccacgaccaaccaaaggttcagccactaa 7041724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 213384 - 213329
Alignment:
Q  54 aatgcaggataacatactcagttacgaatgcagcttttgacgatccactctggagg 109  Q
    |||||| ||||||||||||| |||||||| |||||||||||||||||||| |||||    
T  213384 aatgcaagataacatactcacttacgaattcagcttttgacgatccactcgggagg 213329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 7025580 - 7025634
Alignment:
Q  95 gatccactctggaggctgcgggaacaagttgaaatattccggataatcggacaaa 149  Q
    |||||||||||||||  ||  |||||||||| ||||||| |||||||||||||||    
T  7025580 gatccactctggaggtggccagaacaagttggaatattcaggataatcggacaaa 7025634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 453 - 586
Target Start/End: Complemental strand, 8814311 - 8814178
Alignment:
Q  453 taaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtggagtcgt 552  Q
    ||||||||  |||||||||||||||||||||||||||||| |||||| |  || || ||| ||| ||||||||||||||||||||||||||| ||||| |    
T  8814311 taaacatctgctaacaacaaatcacccttgctctccactaggaatttaatatccccgccagcaagcaaagattcagccactaactgaacagttgagtcat 8814212  T
Q  553 ccggtccaacagcaactgtccgtccagttttgtc 586  Q
    |||||||||||| ||| ||| |||||||||||||    
T  8814211 ccggtccaacagtaacagtctgtccagttttgtc 8814178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 453 - 596
Target Start/End: Original strand, 247022 - 247168
Alignment:
Q  453 taaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtgga---gt 549  Q
    |||||||| | |||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||| |||||| | ||||||||    |    
T  247022 taaacatctattaacaacaaatcacccttgctctccactaagaatttaatatctccaccaccaaccaaagattcagcaactaaccggacagtggaatcat 247121  T
Q  550 cgtccggtccaacagcaactgtccgtccagttttgtcgacagcataa 596  Q
    | ||||||||||   ||||||||| |||||||||||| || ||||||    
T  247122 cctccggtccaaatccaactgtccatccagttttgtctaccgcataa 247168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 453 - 596
Target Start/End: Complemental strand, 251355 - 251206
Alignment:
Q  453 taaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtggagtcgt 552  Q
    ||||||||  |||||||||||||||  | ||||||||| |||||||| |  |||||||||||||||||||||| |||||||||||| |||||||| || |    
T  251355 taaacatctgctaacaacaaatcactgtcgctctccaccaagaatttaatatctccaccaccaaccaaagattgagccactaactggacagtggaatcct 251256  T
Q  553 ccggtc------caacagcaactgtccgtccagttttgtcgacagcataa 596  Q
    | ||||      |||||| ||||||||||||||| ||||| || ||||||    
T  251255 caggtccaagttcaacagtaactgtccgtccagtattgtctaccgcataa 251206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 4428420 - 4428541
Alignment:
Q  54 aatgcaggataacatactcagttacgaatgcagcttttgacgatccactctggaggctgcgggaacaagttgaaatattccggataatcggacaaaggtg 153  Q
    |||||| ||||||||||||| ||| ||| ||||| || | |||||||||||| |||  ||  ||||||||| |||||||||||| |||| |||||||| |    
T  4428420 aatgcaagataacatactcatttaggaacgcagcattcgccgatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcg 4428519  T
Q  154 aaagctgatgtttatccaagtc 175  Q
     ||||||  ||| |||||||||    
T  4428520 taagctggcgttgatccaagtc 4428541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 18991175 - 18991255
Alignment:
Q  263 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaac 343  Q
    ||||| |||||||||||||||| |||| || |||||||||||||| |||||||| |||||  ||  ||| |||||||||||    
T  18991175 aaagacgacacaattccctttgacaacagataaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaac 18991255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 450 - 499
Target Start/End: Original strand, 235374 - 235423
Alignment:
Q  450 tcataaacatccactaacaacaaatcacccttgctctccactaagaattt 499  Q
    |||||||||||  |||||||||||||||| | ||||||||||||||||||    
T  235374 tcataaacatctgctaacaacaaatcaccgtcgctctccactaagaattt 235423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 4428602 - 4428655
Alignment:
Q  263 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaa 316  Q
    ||||||||||||||||||||| | ||| ||||| ||||||||||| ||||||||    
T  4428602 aaagatgacacaattccctttagtaacagacaactcagaagcagaggcagaaaa 4428655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 263 - 359
Target Start/End: Original strand, 4439831 - 4439927
Alignment:
Q  263 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactc 359  Q
    ||||||||||||||||||||| | |||  ||||||| |||||||| |||||||| |||||  ||  ||| || ||||||||  ||||||| ||||||    
T  4439831 aaagatgacacaattccctttagaaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatctcccaaactc 4439927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 416
Target Start/End: Original strand, 246841 - 246991
Alignment:
Q  266 gatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacag-tcagcccctaagaacaaaacaatatctcctaaactctttaa 364  Q
    |||||||||||||||||||  |||  |||||||  ||||||| |||||||| || |||  || |||| |||||||||||  ||||||||||| |    ||    
T  246841 gatgacacaattccctttgtgaacacacaaatccaaagcagaagcagaaaatgaccagaacaacccc-aagaacaaaactgtatctcctaaattagccaa 246939  T
Q  365 cttcacccactccgtctccttctcattaagcttaaacaaatgaatccttaca 416  Q
    ||||||||| | | ||||| |  |||||||||||||||| | ||||||||||    
T  246940 cttcacccatttcttctcccttgcattaagcttaaacaagtcaatccttaca 246991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 4439649 - 4439754
Alignment:
Q  54 aatgcaggataacatactcagttacgaatgcagcttttgacgatccactctggaggctgcgggaacaagttgaaatattccggataatcggacaaaggtg 153  Q
    |||||| ||||||||||||| ||| ||| ||| | || | |||||||||||| |||  ||  ||||||||| ||||| || ||| |||| |||||||| |    
T  4439649 aatgcaagataacatactcatttaggaacgcaacattcgccgatccactctgcaggtggccagaacaagttaaaatagtcaggacaatcagacaaaggcg 4439748  T
Q  154 aaagct 159  Q
    ||||||    
T  4439749 aaagct 4439754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 450 - 585
Target Start/End: Complemental strand, 9494784 - 9494646
Alignment:
Q  450 tcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccacca---accaaagattcagccactaactgaacagtgg 546  Q
    ||||||||||| ||||||||||||||||| |  ||||| ||||||||||||| ||| || ||||||   ||||||||||||||||||||||  | ||||     
T  9494784 tcataaacatctactaacaacaaatcaccgtcactctcgactaagaatttgatgtcccccccaccagaaaccaaagattcagccactaactcgaaagtga 9494685  T
Q  547 agtcgtccggtccaacagcaactgtccgtccagttttgt 585  Q
    |||| ||| |||||| || | ||||||||||||||||||    
T  9494684 agtcatccagtccaagagtagctgtccgtccagttttgt 9494646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 292 - 598
Target Start/End: Original strand, 9343845 - 9344151
Alignment:
Q  292 acaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttcacccactccgtctccttctcatt 391  Q
    ||||||| |||||||| |||||||| ||||| |||  ||| |||||||||||| |||| |||||| |  ||||||||||||||| | ||||| ||||||     
T  9343845 acaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatctcatc 9343944  T
Q  392 aagcttaaacaaatgaatccttacaggattgtgaccagggaagccgatacgtgtacaatcataaacatccactaacaacaaatcacccttgctctccact 491  Q
    ||||||||||| || || ||||| || ||   |||| |||||  ||| ||    ||| |||||||  ||||||| |||||| || ||||  ||||| |||    
T  9343945 aagcttaaacacatcaacccttatagcatcaggacccgggaactcgaaacaaaaacactcataaatgtccactagcaacaactctccctctctctcgact 9344044  T
Q  492 aagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtggagtcgtccggtccaacagcaactgtccgtccagttttgtcgacag 591  Q
    ||||||||   ||| || ||||||||||||| ||||   ||||| || ||| | |||| |||||| |||||   ||||||| | ||| |||||||||||     
T  9344045 aagaattttttgtccccgccaccaaccaaaggttcaataactaagtggacattcgagttgtccggcccaaccataactgtctgaccatttttgtcgacaa 9344144  T
Q  592 cataaag 598  Q
    |||||||    
T  9344145 cataaag 9344151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 292 - 561
Target Start/End: Original strand, 9448314 - 9448583
Alignment:
Q  292 acaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttcacccactccgtctccttctcatt 391  Q
    ||||||| |||||||| |||||||| |||||||||  ||| |||||||||||| |||| |||||| |  ||||||||||||| | | ||||||||||||     
T  9448314 acaaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcata 9448413  T
Q  392 aagcttaaacaaatgaatccttacaggattgtgaccagggaagccgatacgtgtacaatcataaacatccactaacaacaaatcacccttgctctccact 491  Q
    ||||||||||| || || ||||| || ||   |||| |||||  ||| ||    ||| |||||||  ||||||| |||||| || ||||  || || |||    
T  9448414 aagcttaaacacatcaacccttatagcatcaggacccgggaactcgaaacaaaaacactcataaatgtccactagcaacaagtctccctctctatcaact 9448513  T
Q  492 aagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtggagtcgtccggtccaa 561  Q
    |||||||| | ||| || ||| ||| ||||| |||||| ||||| || ||| | ||||||||||| ||||    
T  9448514 aagaattttatgtcccctccatcaatcaaaggttcagcaactaagtggacattcgagtcgtccggcccaa 9448583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 263 - 395
Target Start/End: Complemental strand, 9494953 - 9494821
Alignment:
Q  263 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttt 362  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| |||||||| |||||  ||  ||| |||||||||||  |||| ||||||||| |     
T  9494953 aaagatgacacaattccctttggaaacgcacaaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctatcccctaaactcatc 9494854  T
Q  363 aacttcacccactccgtctccttctcattaagc 395  Q
    || ||||||||   | |||||||||||| ||||    
T  9494853 aaattcacccatctcatctccttctcatcaagc 9494821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 263 - 390
Target Start/End: Original strand, 9432867 - 9432994
Alignment:
Q  263 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttt 362  Q
    |||||||| ||||||||||| || |||  ||||||| || || || |||||||||||| | |||  ||||| |||||||||  ||||||||||| ||||     
T  9432867 aaagatgatacaattcccttcggaaacacacaaatccgaggctgaagcagaaaaggaatattcaagccctatgaacaaaaccctatctcctaaattcttg 9432966  T
Q  363 aacttcacccactccgtctccttctcat 390  Q
    | ||||||||||| | ||||||||||||    
T  9432967 atcttcacccacttcctctccttctcat 9432994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 263 - 390
Target Start/End: Original strand, 41985599 - 41985726
Alignment:
Q  263 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttt 362  Q
    ||||||||||||||| |||||| |||| |||||||| |||||||| |||||||| |||||  ||  ||| |||||||||||  |||| |||||||||       
T  41985599 aaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 41985698  T
Q  363 aacttcacccactccgtctccttctcat 390  Q
    ||||| ||||| | | ||||||||||||    
T  41985699 aacttgacccatttcttctccttctcat 41985726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 54 - 161
Target Start/End: Original strand, 9432678 - 9432786
Alignment:
Q  54 aatgcaggataacatactcagttac-gaatgcagcttttgacgatccactctggaggctgcgggaacaagttgaaatattccggataatcggacaaaggt 152  Q
    |||||| |||||||||||||||||  || ||  |||||||||||||||||| |||||  ||  |||||||||| ||||||| |||||||| ||||||||     
T  9432678 aatgcaagataacatactcagttaatgactgtggcttttgacgatccactccggaggtggccagaacaagttgtaatattcaggataatcagacaaaggc 9432777  T
Q  153 gaaagctga 161  Q
     ||||||||    
T  9432778 caaagctga 9432786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 263 - 373
Target Start/End: Original strand, 9407337 - 9407447
Alignment:
Q  263 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttt 362  Q
    ||||| |||||||||||||||||||||  ||||||| ||||| || |||||||| |||||  ||  | | |||||||||||  |||| ||||||||| |     
T  9407337 aaagaagacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctatcccctaaactcatc 9407436  T
Q  363 aacttcaccca 373  Q
    |||||||||||    
T  9407437 aacttcaccca 9407447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 265 - 395
Target Start/End: Complemental strand, 9695759 - 9695629
Alignment:
Q  265 agatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaa 364  Q
    |||||||||||||||| || |||||  |||| || |||||||||||||| || ||||||||  |||| || ||||||||  |||| |||||| |  | ||    
T  9695759 agatgacacaattcccatttgcaacacacaactctgaagcagatgcagagaacgaacagtcttcccccaaaaacaaaaccctatcccctaaattggtcaa 9695660  T
Q  365 cttcacccactccgtctccttctcattaagc 395  Q
    ||| ||||||| | |||||||||||| ||||    
T  9695659 cttgacccacttcttctccttctcatcaagc 9695629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 263 - 410
Target Start/End: Original strand, 9402350 - 9402500
Alignment:
Q  263 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctt- 361  Q
    |||||||| |||||||||||| | |||  ||||||| || ||||| |||||||||||| | |  | ||||| |||||||||  |||||| |||| ||||     
T  9402350 aaagatgatacaattccctttaggaacacacaaatctgaggcagaggcagaaaaggaatattttgtccctatgaacaaaaccctatctcttaaattcttc 9402449  T
Q  362 --taacttcacccactccgtctccttctcattaagcttaaacaaatgaatc 410  Q
       ||||||||||||| | |||||||||||| |||  |||||||| |||||    
T  9402450 tcgaacttcacccacttcctctccttctcatcaagtctaaacaaacgaatc 9402500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 263 - 322
Target Start/End: Original strand, 9425544 - 9425603
Alignment:
Q  263 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaaca 322  Q
    |||||||||||||||||||||||||||  ||||||| ||||| || |||||||| |||||    
T  9425544 aaagatgacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaaca 9425603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 263 - 322
Target Start/End: Complemental strand, 9617608 - 9617549
Alignment:
Q  263 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaaca 322  Q
    ||||||||||||||||||||||| |||  ||||||| |||||||| |||||||| |||||    
T  9617608 aaagatgacacaattccctttggaaacacacaaatctgaagcagaagcagaaaatgaaca 9617549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 158
Target Start/End: Original strand, 9343639 - 9343741
Alignment:
Q  56 tgcaggataacatactcagttacgaatgcagcttttgacgatccactctggaggctgcgggaacaagttgaaatattccggataatcggacaaaggtgaa 155  Q
    |||| |||||| |||| |||||| || ||| ||||||||||||||||| |||||  ||  ||||||| | |||||||| ||| |||| |||| |||||||    
T  9343639 tgcaagataacttacttagttacaaaggcaacttttgacgatccactccggaggtggccagaacaaggtaaaatattcaggacaatcagacagaggtgaa 9343738  T
Q  156 agc 158  Q
    |||    
T  9343739 agc 9343741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 263 - 410
Target Start/End: Original strand, 9420589 - 9420739
Alignment:
Q  263 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctt- 361  Q
    |||||||| |||||||||||| | |||  ||||||| || ||||| |||||||||||| | |  | ||||| |||||||||  |||||| |||| ||||     
T  9420589 aaagatgatacaattccctttaggaacacacaaatctgaggcagaggcagaaaaggaatattttgtccctatgaacaaaaccctatctcttaaattcttc 9420688  T
Q  362 --taacttcacccactccgtctccttctcattaagcttaaacaaatgaatc 410  Q
       || |||||||||| | |||||||||||| |||  |||||||| |||||    
T  9420689 tcgaatttcacccacttcctctccttctcatcaagtctaaacaaacgaatc 9420739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 9329670 - 9329729
Alignment:
Q  96 atccactctggaggctgcgggaacaagttgaaatattccggataatcggacaaaggtgaa 155  Q
    ||||||||||||||  ||  |||||| ||||||||||| |||||||| ||||||||||||    
T  9329670 atccactctggaggtggccagaacaacttgaaatattcaggataatccgacaaaggtgaa 9329729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 265 - 419
Target Start/End: Original strand, 9336513 - 9336667
Alignment:
Q  265 agatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaa 364  Q
    |||||||||||||||| |||||||    ||| || |||||||| |||||||| |||||  ||  ||| |||||||||||  ||||||||||| || | |     
T  9336513 agatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcag 9336612  T
Q  365 cttcacccactccgtctccttctcattaagcttaaacaaatgaatccttacagga 419  Q
    ||| ||||||    |||| ||||||| |||| |||||| || ||||| |||||||    
T  9336613 cttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacagga 9336667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 158
Target Start/End: Original strand, 9448116 - 9448210
Alignment:
Q  64 aacatactcagttacgaatgcagcttttgacgatccactctggaggctgcgggaacaagttgaaatattccggataatcggacaaaggtgaaagc 158  Q
    |||||||||| ||||||| ||  |||| ||||||||||||||||||  ||  ||||||||| |||  ||| ||  |||| |||||||||||||||    
T  9448116 aacatactcaattacgaaggctactttggacgatccactctggaggtggccagaacaagttcaaaatttcagggcaatcagacaaaggtgaaagc 9448210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 390
Target Start/End: Complemental strand, 9646499 - 9646382
Alignment:
Q  273 caattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttcaccc 372  Q
    ||||||||||||| |||  ||||||| ||||| ||||||||||| |||||  |  | || || ||||||||  |||| |||||| || | ||||||||||    
T  9646499 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgccaaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9646400  T
Q  373 actccgtctccttctcat 390  Q
    | | | ||||||||||||    
T  9646399 atttcttctccttctcat 9646382  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 390
Target Start/End: Complemental strand, 9655492 - 9655375
Alignment:
Q  273 caattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttcaccc 372  Q
    ||||||||||||| |||  ||||||| ||||| ||||||||||| |||||  |  | || || ||||||||  |||| |||||| || | ||||||||||    
T  9655492 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgcccaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9655393  T
Q  373 actccgtctccttctcat 390  Q
    | | | ||||||||||||    
T  9655392 atttcttctccttctcat 9655375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 172
Target Start/End: Complemental strand, 20694594 - 20694483
Alignment:
Q  61 gataacatactcagttacgaatgcagcttttgacgatccactctggaggctgcgggaacaagttgaaatattccggataatcggacaaaggtgaaagctg 160  Q
    |||||||||||||  ||  |||||||  ||| ||||||||||| |||||  ||  ||||||||| |||||||| |||||||||||||||||||||||| |    
T  20694594 gataacatactcaactagaaatgcaggattttacgatccactcaggaggaggccagaacaagttaaaatattcaggataatcggacaaaggtgaaagccg 20694495  T
Q  161 atgtttatccaa 172  Q
    || || ||||||    
T  20694494 atcttgatccaa 20694483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 322
Target Start/End: Complemental strand, 20694446 - 20694387
Alignment:
Q  263 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaaca 322  Q
    |||||||||||||||||||||||||||  ||||||| |||||||| |||||||| |||||    
T  20694446 aaagatgacacaattccctttggcaacacacaaatccgaagcagaagcagaaaacgaaca 20694387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 417
Target Start/End: Complemental strand, 450221 - 450102
Alignment:
Q  298 cagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttcacccactccgtctccttctcattaagctt 397  Q
    |||||||||| |||||||||||| |   | | |||||||||||||   ||||||||||| || | ||||| |||||||   |||||||||||| |||| |    
T  450221 cagaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcct 450122  T
Q  398 aaacaaatgaatccttacag 417  Q
    ||||| || ||||| |||||    
T  450121 aaacacatcaatccatacag 450102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 262 - 322
Target Start/End: Original strand, 3695660 - 3695720
Alignment:
Q  262 aaaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaaca 322  Q
    ||||||| |||||||||||||||||| | |||||||| ||||||   |||||||| |||||    
T  3695660 aaaagatcacacaattccctttggcagcagacaaatccgaagcaatagcagaaaatgaaca 3695720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 373
Target Start/End: Complemental strand, 44688929 - 44688820
Alignment:
Q  264 aagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttta 363  Q
    ||||| |||||||||||||||||||  |||||||| |||||||  | |||||| ||| | |||  ||| ||||||||||   |||  ||||||||| |||    
T  44688929 aagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgtta 44688830  T
Q  364 acttcaccca 373  Q
    |||| |||||    
T  44688829 actttaccca 44688820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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